BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05750.1
Length=3226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470582 jgi|Araly1|470582|fgenesh2_kg.1__536__AT1G05750.1 3210 0.0
> Ahg470582 jgi|Araly1|470582|fgenesh2_kg.1__536__AT1G05750.1
Length=3116
Score = 3210 bits (1738), Expect = 0.0
Identities = 2083/2247 (93%), Gaps = 33/2247 (1%)
Strand=Plus/Plus
Query 1 ACCATCTCAATCGAATGGGTCTCCTTCCCGTCGTCGGAATTACTTCGCCGGCGCTCATCA 60
|||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 ACCATCTCTATCGAATGGGTCTCCTTCCCGTCGTCGGAACTATTTCGCCGGCGCTCATCA 60
Query 61 CCCACAAAAATCACGCCAATCCAAAGATACAGAGACATAATCAATCTACCTCCGAGACCA 120
||| ||| |||||||||||||||||||||||||| ||| ||||||||||| || | ||
Sbjct 61 CCCGCAAGCGTCACGCCAATCCAAAGATACAGAGACTTAACCAATCTACCTCTGAAAACA 120
Query 121 CTGTTTCATGGACTTCTCGCATCAATCTCCTCACGCGCAATGGTCGATTAGCGGAGGCAG 180
|||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 121 CTGTCTCATGGACTTCTCGCATCACTCTCCTCACACGCAATGGTCGATTAGCAGAGGCAG 180
Query 181 CGAAGGAATTCTCCGATATGACACTCGCCGGCGTAGAGCCTAACCACATCACTTTCATAG 240
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 181 CGAAGGAATTCTCCGATATGAGACTCGCCGGCGTCGAGCCTAACCACATCACTTTCATTG 240
Query 241 CTCTACTCTCCGGGTGTGGTGATTTTACCTCCGGAAGTGAAGCCTTGGGCGATTTGCTTC 300
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 CTATACTCTCCGGGTGTGGTGATTTTCCCTCCGGAAGTGAAGCCTTGGGCGATTTGCTTC 300
Query 301 ATGGGTATGCTTGTAAACTTGGTCTTGATAGAAACCATGTCATGGTTGGCACCGCAATTA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 ATGGGTATGCTTGTAAACTTGGTCTTGATAGAAACCATGTCATGGTTGGCACTGCAATTA 360
Query 361 TCGGCATGTACTCCAAACGCGGCCGTTTTAAGAAGGCTAGATTG-GTTTTTGATTACATG 419
||||||||||||||||||| || ||| |||||||||||||| || |||||||||||||||
Sbjct 361 TCGGCATGTACTCCAAACGTGGTCGTGTTAAGAAGGCTAGA-TGTGTTTTTGATTACATG 419
Query 420 GAAGATAAAAATTCGGTTACTTGGAATACAATGATCGATGGGTACATGAGAAGTGGTCAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GAAGATAAAAATTCGGTTACTTGGAATACAATGATCGATGGGTACATGAGAAGTGGTCAA 479
Query 480 GTCGATAACGCTGCTAAGATGTTCGACAAAATGCCTGAACGAGACTTGATTTCTTGGACG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTCGATAACGCTGCTAAGATGTTCGACAAAATGCCTGAACGAGACTTGATTTCTTGGACA 539
Query 540 GCTATGATAAATGGCTTTGTTAAGAAAGGTTATCAAGAGGAAGCTTTGTTATGGTTCCGT 599
|||||||||||||| |||||||| ||||||| ||| |||||||||||| ||||||||||
Sbjct 540 GCTATGATAAATGGGTTTGTTAATAAAGGTTTTCACGAGGAAGCTTTGGCATGGTTCCGT 599
Query 600 GAAATGCAGATTTCTGGAGTAAAACCAGATTACGTTGCTATTATTGCTGCTCTTAACGCT 659
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGATGCAGATTTCTGGAGTGAAACCAGATTACGTTGCTATTATTGCTGCTCTTAACGCT 659
Query 660 TGCACAAACCTTGGTGCTCTCTCATTTGGATTATGGGTACATCGTTATGTTTTGAGTCAG 719
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 TGCACAAACCTTGGTGCTCTCTCGTTTGGATTATGGGTACATCGTTATGTTTTGAGTCAG 719
Query 720 GATTTCAAGAACAATGTGAGGGTGAGTAATTCACTGATCGATTTGTATTGTCGATGCGGG 779
||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 GATTTCATGAACAATGTCAGGGTGAGTAATTCACTGATTGATTTGTATTGTCGATGCGGG 779
Query 780 TGTGTGGAGTTTGCTCGACAAGTTTTTTACAACATGGAGAAACGAACCGTAGTTTCGTGG 839
||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 780 TGTGTGGAGTTTGCTCGACAAGTTTTTGACAAAATGGAGAAACGAACTGTAGTTTCGTGG 839
Query 840 AATTCAGTCATTGTTGGTTTTGCTGCTAATGGAAATGCACATGAATCATTAGTCTACTTC 899
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 AATTCAGTCATTGTTGGTTTTGCTGCTAATGGAAATGCACATGAATCTTTAGTCTACTTC 899
Query 900 AGGAAAATGCAAGA-GAAAGGCTTTAAACCTGACGCAGTCACTTTCACTGGGGCGCTTAC 958
|| ||||||||||| |||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 900 AGAAAAATGCAAGAAGAAAGG-TTTAAACCTGACGCAGTCACTTTCACTGGGGCACTAAC 958
Query 959 CGCGTGTAGCCATGTAGGTCTAGTTGAAGAAGGTCTTCGATATTTTCAAATTATGAAATG 1018
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 959 CGCGTGTAGCCATGTAGGTCTAGTTGAAGAAGGTCTTCGATATTTCCAAATTATGAAAAG 1018
Query 1019 TGATTACAGAATCTCGCCTCGAATTGAGCATTATGGATGCTTAGTGGATTTGTATAGTCG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGATTACAGAATCTCGCCTCGAATTGAGCATTATGGATGCTTAGTGGATTTGTATAGTCG 1078
Query 1079 GGCTGGGAGATTGGAAGACGCTTTGAAGTTGGTGCAGAGCATGCCAATGAAGCCAAATGA 1138
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1079 GGCTGGGAGATTGGAAGACGCTTTGAAGTTGGTACAGAGCATGCCGATGAAGCCAAATGA 1138
Query 1139 AGTTGTGATTGGATCGTTGCTTGCAGCTTGCAGCAATCATGGGAACAATATCGTCTTAGC 1198
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1139 AGTTGTGATTGGATCGTTGCTTGCAGCTTGCAGAAATCATGGGAACAATACCGTCTTAGC 1198
Query 1199 AGAGAGGCTGATGAAGCATCTTACCGACCTGAATGTGAAAAGCCATTCAAATTATGTGAT 1258
||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1199 AGAGAAGCTGATGAAGCATCTTACCGACATGAATGTGAAAACCCATTCAAATTATGTGAT 1258
Query 1259 TCTCTCGAATATGTATGCTGCTGATGGAAAATGGGAAGGAGCAAGTAAGATGAGAAGGAA 1318
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCTCTCGAATATGTATGCGGCTGATGGAAAATGGGAAGGAGCAAGTAAGATGAGAAGGAA 1318
Query 1319 GATGAAGGGTCTCGGTCTAAAAAAGCAGCCTGGGTTTAGTTCGATAGAGATTGATGATTG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GATGAAGGGTCTCGGTCTAAAAAAGCAGCCTGGGTTTAGTTCGATAGAGATTGATGATTG 1378
Query 1379 CATGCATGTGTTCATGGCCGGTGACAATGCCCATGTTGAGACCACTTATATCCGCGAGGT 1438
|| ||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 1379 CACGCATGTGTTCATGGCTGGTGACAGTGCCCATGTTGAGACCACTAATATCTGCGAGGT 1438
Query 1439 CCTGGAGCTTATTTCTTCTGATTTGCGATTACAGGGCTGTGTAGTTGAAACCCTTGCTGG 1498
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CCTCAAGCTTATTTCTTCTAATTTGCGATTACAGGGCTGTGTAGTTGAAACCCTTGCTGG 1498
Query 1499 TGATCTCCTCAATGCTTGAAATCCAGGAACCTCCACATCCCATTTTTTGTTCAAGTCCTG 1558
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 1499 TGATCTCCTCAATGCTTGAAATCCAGGAACTTCCACATCCCAATTTTTGCTCAAGTCCTG 1558
Query 1559 AGCGTGAGCATTTGCTCAAATTGGTTGACCGCAAAGAAGCCTTACAGTGGTCTTAGTCTT 1618
||| ||| |||| ||| ||| ||| ||||| ||||||||||||| | | ||
Sbjct 1559 AGCTTGATCATTAGCTAAAAATGGCTGACCACAAAGAAGCCTTA---T---C---GT--- 1606
Query 1619 AGAGTCTTAGAGATGCTGAACGCTAGAATATACCTCATTACATAACCATTGTCGCTTCCT 1678
| ||||| |||||| |||| |||||||| |||||| |||||||||||| | |||| |
Sbjct 1607 -G-GTCTTCGAGATGATGAATTCTAGAATAAACCTCACTACATAACCATTATTGCTTGCA 1664
Query 1679 CCA-ACCTTTTTGCCAGGCCCTACCAATAAAGATCTGGGTGTATATCGCTATTTAAA-CC 1736
| | |||||||| ||||||||||||| |||||||||||||||| |||||||| |||| ||
Sbjct 1665 C-AGACCTTTTTACCAGGCCCTACCAGTAAAGATCTGGGTGTACATCGCTATATAAAACC 1723
Query 1737 TGCTGAATAGAGGCCACACAAGGATATGGTGCTCCCGTGTTTTG-TAAGCTTCGAATCCA 1795
| |||||||||||||||||| |||||||||||| |||| ||| ||||||| |||||||
Sbjct 1724 TAATGAATAGAGGCCACACAATGATATGGTGCTCTCGTGCTTTCATAAGCTTTGAATCCA 1783
Query 1796 AGCTATGTGGCCTTGGCGGCCGTCTCCTCGTGCTAATAAGGTAACCTGAATCTATGTGCA 1855
||||| | ||| || |||||||||||| ||| |||| ||||||||||||| |||||||
Sbjct 1784 AGCTACCTTACCTCGGTGGCCGTCTCCTCATGCCAATATGGTAACCTGAATCCATGTGCA 1843
Query 1856 TTCTTCTGTGTCTTGTCATGTTATGTTGATGTTATTGCTGGTTACTGTCAAGTTAGTAAA 1915
||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1844 TTCTTCTATGTCTGGTCATGTTATGGTGAAGTTATTGCTGGTTACTGTCAAGTTAGTAAA 1903
Query 1916 CAGTTCAATAACTCCCACATTTTGCAACACTTTGGTGTTCTGTTTGCGTGGATTTTGTGA 1975
||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1904 CAGTTAAATAACTCTCACATTTTGCAAAACTTTGGTGTTCTGTTTGCGTGGATTTTGTGA 1963
Query 1976 TACCTTGGGGCATTTTCTAGCATTTGTTTACCTAGCAGTGATCATAGCACAGGATTGATT 2035
||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1964 TACCTTGGG-CATCTTCTAGCATTTGTTTACCTAGCAGTGATCGTAACACAGGATTGATA 2022
Query 2036 CAGCGAAATGC-ATAGGCAGTACAACATCTATAAGACCTGCTAGCTTGAGTGTAATTATT 2094
|||| ||| | ||||||| |||| |||||| ||||||||||| | ||||||||| ||||
Sbjct 2023 CAGCAAAA-GATATAGGCAATACACCATCTACAAGACCTGCTACCGTGAGTGTAAATATT 2081
Query 2095 C-CCAACAATATCCTTGTTAATGCATTTTTCGAA-GATAGTGAGTTCTGTTCTAGGTACA 2152
| |||||||| |||||||||||||||||| | || |||||||| | ||||||| ||||
Sbjct 2082 CTCCAACAATTTCCTTGTTAATGCATTTT-CTAAAGATAGTGA-T---GTTCTAGCTACA 2136
Query 2153 TCTGGTATTGTTAATGTTGTATCATAAAGGTTAAAGTAT-TTTGACGATTATATGTTACA 2211
|| |||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||||
Sbjct 2137 TCCGGTATTGTTACTGTTGTATCATAAATGTTAAATTATCTTTGACGATTATATGTTACA 2196
Query 2212 CATATCAGTTTATTCATAGAAGAATTT 2238
|||||||||||||||||||||| ||||
Sbjct 2197 CATATCAGTTTATTCATAGAAGCATTT 2223
Score = 1129 bits (611), Expect = 0.0
Identities = 835/935 (89%), Gaps = 47/935 (5%)
Strand=Plus/Plus
Query 2275 GTATACAAACACTTTCAGCCCAGTACAATTTTTGACTCTGTTTCCTCTGCATTGCCCGTA 2334
||||||| ||| ||||| |||| |||||||| ||||| |||||||||||||||||||||
Sbjct 2224 GTATACATACAATTTCAACCCAAAACAATTTTGGACTCCGTTTCCTCTGCATTGCCCGTA 2283
Query 2335 TCTATTTTGGGTAGAACTGTTTTTGGGCGGAGATAAACACCAATGTACTGTAGTCCCGAG 2394
||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2284 TCTGTTTTGGGTAGAACTGTTTTAGGGCGGAGATAAACACCGATGTACTGTAGTCCCGAG 2343
Query 2395 GCATCATAAGTCCCATGGAAACCGCCGAACTGAGGAGATTTCCCGAGTTTAAAAGCAAAT 2454
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2344 GCATCATAAGTCCCATGGAAACCGCCAAACTGAGGAGATTTCCCGAGTTTAAAAGCAAAT 2403
Query 2455 TTGTCGTTGCTCGAACCGGAGGTGCCAAAAGGACCGTACTCGCTAGTGTTGGTATTGAAT 2514
|| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2404 TTTTCGTAGCTCGAACCGGAGGTGCCAAAAGGACCGTACTCATTAGTGTTGGTAGTGAAT 2463
Query 2515 TTGAGAGACCTCATGTGAGGATTGTTGGCTTCATACTTGTAATACTCTCCACTGATTCCA 2574
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2464 TTGAGAGACCTTATGTGAGGATTGCTGGCTTCATACTTGTAATACTCTCCACTGATTCCA 2523
Query 2575 GTTATGTACTCATGCGGATAGTTGAGCTCTATCTGCTGGGTCCAAATCACATATTAAGTT 2634
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2524 GTGATGTACTCATGCGGATAGTTGAGCTCTATCTGCTGGGTCCAAATCACATATAAAGTG 2583
Query 2635 ATaaaaaaaaaGTTATAACCATGTTCTTAGCATTTTAGTTGGAAGTAGAAATTGTGACGG 2694
| |||| |||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2584 A-AAAA-----GTTACAACCATGTTCTTGGCTTTTTAGTTGGAAGTAGAAATTGTGACGG 2637
Query 2695 AGAAAAAAGAAGAGTCAAAAATCAGACTTACAACGTCAAACATGTTGCCGGAAAATGGAC 2754
| |||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 2638 A-AAAA--------T-AA------GACTTACAACGTCAAACATGTTGCCGGAAAATGGAC 2681
Query 2755 CGTGACGATCGGATAAAACGAGTTTTCCGTCCATCACGAACTGGAATTGGATAGACATAA 2814
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2682 CGTGACGGTCGGATAAAACGAGTTTTCCGTCCATCACCAACTGGAATTGGATAGACATAA 2741
Query 2815 TTCCAGCGACGCCATGAGATAGAAAAATCTGAGAGATGAAGCCATCGTGAGATCCTTCGT 2874
|||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2742 TTCCTCCAACGCTATGAGATAGAAATATCTGAGAGATGAAGCCATCGTGAGATCCTTCGT 2801
Query 2875 CCCAGTTTACAATTGTAGTGCTTCTAGCATCATGCTTCCCTACAGGTCCTATCTTCATTT 2934
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2802 CCCAGTTTACAATTGTACTGCTTCTAGCATCATGCTTCCCTACTGGTCCTATCTTCATTT 2861
Query 2935 TCCCTTTCtttttttttGTACGACCAAAA-CTCAAAAGCTCTTTTGTTTGGTTACATAAC 2993
|||||| | || || | |||||||||| ||| || ||| ||| ||||| ||||||||
Sbjct 2862 TCCCTTCCATTCTTCT---ACGACCAAAAACTCTAA-GCT-TTTA-TTTGGATACATAAC 2915
Query 2994 GAAAATAGCATAACATTAATATATATACATGTAGAGATTCAAAGTTCTCTAACTCTGAAG 3053
||||| | ||||| | | |||| |||||||||||||| | || ||||| | |||||
Sbjct 2916 GAAAA-A-CATAA--T-A-TATA----CATGTAGAGATTCATACTTGTCTAAGTTTGAAG 2965
Query 3054 TCTCAGATTGGAATATGCCTATCCAATTTGATATTAG-TAATTCATCTTAC-G-ATTCAT 3110
|||||||||||||||||| ||||||||||| |||| | ||||||||||||| | ||||||
Sbjct 2966 TCTCAGATTGGAATATGCTTATCCAATTTGGTATTTGATAATTCATCTTACAGGATTCAT 3025
Query 3111 TGTTTTATTGCATTTATCTTTGCTTCTTCTCTCCATTACCCAATTTGTTTTAATGAAATG 3170
||||||||| ||||||||||||||||| ||| | ||||||||| |||||||||| |||||
Sbjct 3026 TGTTTTATTTCATTTATCTTTGCTTCT-CTC-C-ATTACCCAAATTGTTTTAATAAAATG 3082
Query 3171 ACTAATAGATTTGTTA-CTAGAGATTCTTTAAGAT 3204
||||||||| |||||| | |||||||||||||||
Sbjct 3083 ACTAATAGAGTTGTTAACG-GAGATTCTTTAAGAT 3116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121746176027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5