BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05780.1
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470584 jgi|Araly1|470584|fgenesh2_kg.1__538__AT1G05780.1 719 0.0
> Ahg470584 jgi|Araly1|470584|fgenesh2_kg.1__538__AT1G05780.1
Length=583
Score = 719 bits (389), Expect = 0.0
Identities = 467/504 (93%), Gaps = 7/504 (1%)
Strand=Plus/Plus
Query 142 GGTGGTTTTGCCATGGCTGGAGTTATGCACAAGTTCCTTATTGCGTCAATGTTCATGTGG 201
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 40 GGTGGTTTTGCCATGGCTGGAGTTATGCACAAGTTCCTTATTGTGTCAATGTTCATGTGG 99
Query 202 ATTCTTCCTGTTGCCATATTATACGGATTCAACCACAATTTGCTTCCTGGTTCAACGACA 261
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 100 ATTCTTCCTGTTGCCATATTATATGGATTCAACTACAATTTGCTTCCTGGTTCAACGACA 159
Query 262 TTGTCTCCTCATTCTCTAATTCT-CTTGAGCGGATTTCTTGCGGTGGTATCAGTGAACAC 320
||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||
Sbjct 160 TTGTCTCCTCATTCTCTAACTCTAC-TGAGCGGATTTCTTGCTGTGGTATCAGTGAACAT 218
Query 321 AGTGATCGTGTTCTACATCTGTATGGC-CATGAAAGAACCTGCAGATAAACACAAACCAG 379
|||||| ||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 219 AGTGATTGTGTTCTACATATGTATGGCTC-TGAAAGAACCTGCAGATAAACACAAACCAG 277
Query 380 ACGCTGCATTTCTCGCTGAGGCCAAAGATAGTGTGAACAAATTGACAAAAGGAGCCACAA 439
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 278 ACGCTGCATTTCTCGCTGAGGCCAAAGATAGTGTGAGCAAATTGACAAAAGGAGCCCCAA 337
Query 440 GCAGTGATGATCATGCACTCAAAAAACAAGAGTGAGAGCTTTCTTAATCCAATTATGAAA 499
|||||||||||||||||||||| |||||||| ||||| ||||||||||||| || |||||
Sbjct 338 GCAGTGATGATCATGCACTCAAGAAACAAGAATGAGATCTTTCTTAATCCATTTTTGAAA 397
Query 500 TGAAGAACAACATCTGGGTTGGATCGAATGGAGCAGACCTCGGGTTATCGAAATAGAT-T 558
|||||||| |||||||||| |||||||||||||||||||||||||| | |||| ||| |
Sbjct 398 CGAAGAACAGCATCTGGGTTCGATCGAATGGAGCAGACCTCGGGTTAACTAAATGGATGT 457
Query 559 A-TTACAGGATTCTGTGAAAATTGAGGTTTAGGGTTGGTTAAACAAAGTAGCAGAAAA-A 616
|||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||| |
Sbjct 458 TGTTACAGGATTCTGTGACATTTGAGGTTTAGGGTTGGTTAAACTAAGTAGCTGAAAATA 517
Query 617 CATGTCGTGTATGATGAACAGAGA 640
| | | ||||||||||||| ||||
Sbjct 518 CCTTTTGTGTATGATGAACCGAGA 541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25656723141
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5