BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05800.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470587 jgi|Araly1|470587|fgenesh2_kg.1__541__AT1G05800.1 2200 0.0
> Ahg470587 jgi|Araly1|470587|fgenesh2_kg.1__541__AT1G05800.1
Length=1416
Score = 2200 bits (1191), Expect = 0.0
Identities = 1342/1417 (95%), Gaps = 2/1417 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGCCAAAGTCTTCACTCAGAACCCTATCTATTCTCAATCTCTAGTTAGAGACAAA 60
||||||||||||||||||||||| |||||||| | ||||| ||||||| |||||||||||
Sbjct 1 ATGGCGGCCAAAGTCTTCACTCAAAACCCTATATGTTCTCCATCTCTAATTAGAGACAAA 60
Query 61 ACTCCTCAACAGAAACACAATCTTGACCATTTCTCTATATCCCAGCACACCTCTAAAAGA 120
||||||||||| ||||||||||||| |||||||||| | ||| || ||||||||||||||
Sbjct 61 ACTCCTCAACAAAAACACAATCTTGGCCATTTCTCTCTCTCCAAGAACACCTCTAAAAGA 120
Query 121 CTCGTTGtctcttcttctacaatgtcccctccgatttcatcttctccactctctcttcct 180
||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||| |||
Sbjct 121 CTCGTTGTCTCTTCTTCTATAATGTCCCCTCCGATTCCATCTTCTCCGCTCGCTCTCCCT 180
Query 181 tcttcttcttcttctcaggccattcctccttctcGAGCACCTGCAGTGACTCTACCGTTG 240
||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||||
Sbjct 181 TCTTCTTCTTCTTCTCAGGTCTTTCCTCCTTCAAGAGCACCTGCAGCAACTCTACCGTTG 240
Query 241 TCTCGGGTTTGGAGAGAGATACAAGGGAGCAATAACTGGGAAAATCTCATTGAACCTCTA 300
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||
Sbjct 241 TCTCGGATTTGGAGAGAGATACAAGGAAGCAATAACTGGGAAAATCTTATTGACCCTTTA 300
Query 301 AGCCCTATTCTCCAACAAGAGATCACTCGCTACGGGAACTTACTCTCCGCTTCTTACAAA 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCCCTATTCTCCAACAAGAGATTACTCGCTACGGGAACTTACTCTCCGCTTCTTACAAA 360
Query 361 GGGTTTGATCTAAACCCTAACTCCAAACGTTACTTGAGTTGCAAGTATGGAAAAAAGAAC 420
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 361 GGGTTTGATCTAAACCCTGACTCCAAACGTTACTTGAACTGCAAGTATGGAAAAAAGAAC 420
Query 421 TTGCTTAAAGAATCCGGAATCCATGACCCTGATGGCTACCAAGTCACCAAGTATATCTAC 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 TTGCTTAAAGAATCCGGAATCCATGACCCTGATGGCTACCAACTCACCAAGTATATCTAC 480
Query 481 GCCACACCAGACATCAACCTCAACCCTATCAAGAACGAGCCTAACCGTGCACGTTGGATC 540
||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 481 GCCACTCCAGACGTCAACCTCAACCCTATCAAGAATGAGCCTAACCGTGCTCGTTGGATT 540
Query 541 GGTTATGTAGCGGTTTCTTCTGATGAATCGGTGAAACGTTTGGGAAGGAGGGATATTTTG 600
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct 541 GGTTATGTAGCGGTTTCTTCTGATGAATCAGTGAAACGTTTGGGGAGGAGGGATATTGTG 600
Query 601 GTGACGTTTCGTGGCACTGTCACCAACCATGAGTGGTTAGCTAACCTAAAGAGCTCTTTG 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGACGTTTCGTGGCACTGTGACCAACCATGAGTGGTTAGCTAACCTAAAGAGCTCTTTG 660
Query 661 ACTCCGGCTAGGCTTGATCCTCATAACCCTCGTCCTGATGTCAAGGTCGAATCCGGGTTC 720
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACTCCGGCTCGTCTTGATCCTCATAACCCTCGTCCTGATGTCAAGGTCGAATCCGGGTTC 720
Query 721 TTAGGTTTATACACATCCGGTGAGAGCGAGAGCAAATTCGGGCTAGAAAGCTGCCGTGAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTAGGTTTATACACATCCGGTGAGAGCGAGAGCAAATTCGGGCTAGAAAGCTGCCGTGAG 780
Query 781 CAGCTTCTCTCCGAGATCTCGAGGCTTATGAACAAGCACAAAGGCGAGGAAATAAGCATA 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 781 CAGCTTCTCTCCGAGATCTCGAGGCTTATGAACAAGCACAAGGGCGAGGAAATGAGCATC 840
Query 841 ACACTTGCGGGACATAGTATGGGGAGTTCTCTAGCTCAGCTTCTAGCTTACGACATAGCG 900
|| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 841 ACGCTTGCGGGACATAGTATGGGGAGTTCGCTAGCTCACCTTCTAGCTTACGACATAGCA 900
Query 901 GAACTCGGTATGAACCAGAGAAGGGACGAAAAACCTGTTCCGGTGACCGTGTTTTCGTTT 960
||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 901 GAACTCGGTATGAACCAGAGAAGTGATGAAAAAGCTGTTCCGGTGACCGTGTTTTCGTTT 960
Query 961 GCTGGTCCTAGAGTTGGTAACTTGGGGTTCAAAAAACGGTGTGAGGAGCTAGGAGTTAAA 1020
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCGGGTCCTAGGGTTGGTAACTTGGGGTTCAAAAAACGGTGTGAGGAGCTAGGAGTTAAA 1020
Query 1021 GTCTTGAGGATCACGAATGTAAACGATCCGATCACCAAACTTCCAGGTTTCTTATTTAAT 1080
|||||||||||||||||| ||||||||||||||||||||||||| |||||||| || ||
Sbjct 1021 GTCTTGAGGATCACGAATATAAACGATCCGATCACCAAACTTCCCGGTTTCTTGTTCAAC 1080
Query 1081 GAGAATTTCAGATCTTTAGGTGGTGTTTACGAGCTTCCTTGGAGCTGTTCTTGCTACACT 1140
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 GAGAATTTCAGATCTTTAGGTGGTGTTTACGAACTTCCTTGGAGCTGTTCTTGCTACACT 1140
Query 1141 CACGTGGGAGTCGAACTCACCCTCGATTTCTTCGATGTTCAAAACATTTCTTGTGTCCAT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CACGTGGGAGTCGAACTCACCCTCGATTTCTTCGATGTTCAAAACATTTCTTGTGTCCAT 1200
Query 1201 GACCTCGAGACTTACATCACTCTAGTAAACCGTCCGAGATGCTCGAAATTGGCGGTTAAT 1260
||||||||||||||||||| | |||| ||||||||||||||||||| || ||| ||||||
Sbjct 1201 GACCTCGAGACTTACATCAATTTAGTTAACCGTCCGAGATGCTCGAGATCGGCAGTTAAT 1260
Query 1261 GAAGACAATTTTGGCGGCGAGTTTTTGAACAGAACAAGTGA-ACTGATGTTCAGTAAGGG 1319
|| ||||||||||||||||| |||||||||||||||||||| | |||||||| |||||||
Sbjct 1261 GAGGACAATTTTGGCGGCGATTTTTTGAACAGAACAAGTGAGA-TGATGTTCGGTAAGGG 1319
Query 1320 ACGACGTCAAGCGTTGCATTTTACAAACGCAGCGACCAATGCGGCATATCTACTTTGTTC 1379
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1320 ACGACGTCGAGCGTTGCATTTAACAAACGCAGCGACCAATGCGGCATATCTACTTTGTTC 1379
Query 1380 TATATCCAACCATATGTTGTATTATAATATATTTTAG 1416
|||||||||||||||||||||||||||||| ||||||
Sbjct 1380 TATATCCAACCATATGTTGTATTATAATATCTTTTAG 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5