BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05810.1
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919287 jgi|Araly1|919287|scaffold_100568.1 1070 0.0
Ahg471894 jgi|Araly1|471894|fgenesh2_kg.1__1848__AT1G16920.1 76.8 2e-13
> Ahg919287 jgi|Araly1|919287|scaffold_100568.1
Length=697
Score = 1070 bits (579), Expect = 0.0
Identities = 663/703 (94%), Gaps = 7/703 (1%)
Strand=Plus/Plus
Query 108 GAAGAAGACGGTGAAGCGAGCGATGTCTTCGGACGACGAAGGAAGAGAGGAGTATCTCTT 167
|||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAGAAGA-AG-GAAGATAACGATGTCTTCGGACGACGAAGGAAGAGAGGAGTATCTCTT 58
Query 168 CAAGATTGTTGTTATCGGCGACTCTGCCGTCGGTAAATCTAATCTTCTATCTCGTTACGC 227
|||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 59 CAAGATAGTTGTCATCGGCGACTCTGCGGTCGGTAAATCTAATCTTCTGTCTCGTTACGC 118
Query 228 ACGTAACGAGTTCAGCGCTAACTCCAAGGCGACGATCGGAGTCGAGTTTCAGACGCAGAG 287
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 119 TCGTAACGAGTTCAGTGCGAATTCCAAGGCGACGATCGGAGTCGAGTTTCAGACGCAGAG 178
Query 288 CATGGAGATTGAAGGTAAAGAGGTCAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGC- 346
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 TATGGAGATTGAAGGTAAAGAGGTTAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGCG 238
Query 347 GTTTCCGTGCCGTCACTTCCGCTTATTACCGTGGCGCTGTCGGTGCCCTCGTCGTTTACG 406
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 239 GTTT-CGTGCCGTCACTTCCGCTTATTACCGTGGCGCTGTCGGTGCGCTCGTCGTTTACG 297
Query 407 ACATTACCCGCCGCACCACTTTCGAAAGCGTTGGACGTTGGCTCGATGAGCTTAAGATCC 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACATTACCCGCCGCACCACTTTCGAAAGCGTTGGACGTTGGCTCGATGAGCTTAAGATCC 357
Query 467 ATTCGGATACGACGGTGGCGAGAATGCTGGTGGGGAACAAGTGTGATCTAGAAAACATAA 526
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATTCGGATACAACGGTGGCGAGAATGCTGGTGGGGAACAAGTGTGATCTAGAAAACATAA 417
Query 527 GAGCAGTGAGCGTGGAGGAAGGAAAGGCTCTAGCCGAAGAGGAAGGACTCTTCTTTGTGG 586
|||||||||||||||| ||||||||||| ||||| |||| ||| || |||||||||||||
Sbjct 418 GAGCAGTGAGCGTGGACGAAGGAAAGGCCCTAGCAGAAGCGGAGGGGCTCTTCTTTGTGG 477
Query 587 AAACATCGGCTCTTGATTCGACTAATGTTAAAACAGCTTTCGAGATGGTGATACTTGATA 646
||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |
Sbjct 478 AAACATCGGCTCTTGATTCCACCAATGTTAAAACAGCTTTCGAAATGGTGATACTTGACA 537
Query 647 TCTACAATAACGTGAGCCGTAAGCAACTCAACTCAGATACTTATAAAGACGAACTCACCG 706
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 538 TCTACAATAACGTGAGCCGTAAGCAACTCAACTCAGACACTTATAAAGATGAACTCACCG 597
Query 707 TGAATCGGGTAAGTCTTGTTAAGGATGATAACTCTGCCTCCAAACAAAGCTCTGGTTTCT 766
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 598 TGAACCGGGTAAGTCTTGTTAAGGATGATAACACTGCCTCCAAACAAAGCTCTGGTTTCT 657
Query 767 CTTGTTGTTCTTCCACTTGATGATATACCACACCAAAATAATC 809
|||||||||||||| |||||| | ||||||| |||| || |||
Sbjct 658 CTTGTTGTTCTTCCTCTTGAT-A-ATACCAC-CCAATATTATC 697
> Ahg471894 jgi|Araly1|471894|fgenesh2_kg.1__1848__AT1G16920.1
Length=770
Score = 76.8 bits (41), Expect = 2e-13
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 301 GGTAAAGAGGTCAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGCGTTTCCGTGCCGTC 360
||||||| |||| |||||||||||||||||||||||||||||| | | ||||||| ||
Sbjct 278 GGTAAAGTCATCAAAGCTCAGATTTGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATC 337
Query 361 ACTTCCGCTTATTACCGTGGCGCTGTCGGTGCCCTCGTCGTTTACGACATTACCCGCCG 419
|| || || || ||||| ||||| || || ||| | || || || | ||||||||
Sbjct 338 ACCAGTGCATACTATCGTGGAGCTGTGGGCGCACTCCTAGTATATGATGTAACCCGCCG 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33205060707
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5