BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05820.1
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919288 jgi|Araly1|919288|scaffold_100569.1 2630 0.0
> Ahg919288 jgi|Araly1|919288|scaffold_100569.1
Length=1651
Score = 2630 bits (1424), Expect = 0.0
Identities = 1561/1628 (96%), Gaps = 6/1628 (0%)
Strand=Plus/Plus
Query 81 TTCTCACGGTGGCGATGTCTTTACCTCCGTTTA-CTTGCCGCCTTCTCGCGGCGGCGGCG 139
|||||||||| |||||||| ||||||||||||| | |||||| ||||||||||||| |
Sbjct 7 TTCTCACGGTAGCGATGTCATTACCTCCGTTTAGC-TGCCGCTTTCTCGCGGCGGCCGTA 65
Query 140 GCTCTCTATCTGATAGGTCTGCTGTGCGTCGGAGCTGACACGAAAGATGTTACCGCTCCC 199
| |||||||||||||||||| ||||||| || |||||||||||||||||||||| ||||
Sbjct 66 ACCCTCTATCTGATAGGTCTGTTGTGCGTTGGGGCTGACACGAAAGATGTTACCGTTCCC 125
Query 200 AAAATTCCTGGTTGCTCCAATGAATTTCAAATGGTCAAAGTTGAGAATTGGGTCAACGGA 259
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 126 AACATTCCAGGTTGCTCCAATGAATTTCAAATGGTCAAAGTCGAGAATTGGGTCAATGGA 185
Query 260 GAAAACGGTGAGACTTTTACCGCCATGACTGCACAGTTTGGCACCATGCTCCCGTCTGAT 319
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 186 GAAAACGGTGAGACTTTTACAGCCATGACTGCACAGTTTGGCACCATGCTCCCGTTTGAT 245
Query 320 AAAGACAAAGCTGTTAAACTTCCGGTTGCTCTTACCACTCCTTTGGACAGTTGCTCCAAT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AAAGACAAAGCTGTTAAACTTCCGGTTGCTCTTACCACTCCTTTGGACAGTTGCTCCAAT 305
Query 380 TTAACTTCAAAGCTATCTTGG-TCTATAGCGTTATCTGTACGTGGCGAGTGTGCTTTCAC 438
|| |||||||||||||| ||| ||||||||||||||| |||||||||| |||||||||||
Sbjct 306 TTGACTTCAAAGCTATC-TGGTTCTATAGCGTTATCTCTACGTGGCGAATGTGCTTTCAC 364
Query 439 AGTTAAGGCTCAAGTTGCACAGGCAGGAGGAGCTGCAGCTTTGGTGTTAATTAACGACAA 498
|| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 365 AGCTAAGGCTGAAGTTGCACAGGCAGGAGGAGCTGCAGCTTTGGTGTTAATAAACGACAA 424
Query 499 AGAAGAGCTTGATGAGATGGTTTGTGGTGAGAAAGATACCTCCTTAAATGTTTCTATACC 558
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 425 AGAAGAGCTTGATGAGATGGTTTGTGGTGAGAAAGACACCTCCTTAAATATTTCTATACC 484
Query 559 TATTTTGATGATTACAACGTCATCTGGAGATGCCCTGAAGAAATCCATTATGCAAAATAA 618
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TATTTTGATGATTACAACATCATCTGGAGATGCCCTGAAGAAATCCATTATGCAAAATAA 544
Query 619 GAAAGTGGAGCTTTTATTGTATGCTCCAAAGAGCCCAATTGTGGATTATGCAGTGGTCTT 678
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 545 GAAAGTGGAGCTTTTATTGTATGCTCCAAAGAGCCCAATTTTGGATTATGCAGTGGTCTT 604
Query 679 CCTCTGGCTAATGTCTGTTGGAACAGTTTTTGTTGCTTCTGTTTGGTCACATGTTACCAG 738
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 605 CCTCTGGCTAATGTCTGTTGGAACAGTTTTCGTTGCTTCTGTTTGGTCACATTTTACCAG 664
Query 739 TCCGAAGAAGAATGATGAGCAGTACGATGAATTATCACCCAAGAAATCTTCGAATGTTGA 798
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 665 TCCGAAGAAGAATGATGAGCAGTACGATGAATTATCACCCAAGAAATCTTCAAATGATGA 724
Query 799 CGCTACCAAAGGTGGTGCTGAAGAGGAAACTCTTGATATTAGTGCTATGGGTGCTGTTAT 858
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 725 CGCTACCAAAGGTGGTGCTGAAGAGGAAACTCTTGATATCAGTGCTATGGGTGCTGTTAT 784
Query 859 CTTTGTCATATCAGCGTCCACATTCCTCGTTTTGCTCTTCTTCTTCATGTCATCGTGGTT 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CTTTGTCATATCAGCGTCCACATTCCTCGTTTTGCTCTTCTTCTTCATGTCATCGTGGTT 844
Query 919 TATCTTGATCCTGACCATA-TTTTTCGTCATTGGTGGTATGCAGGGAATGCATAATATTA 977
||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 845 TATCTTGATCCTGACCATATTTTTTTG-CATTGGTGGTATGCAGGGAATGCATAATATTA 903
Query 978 ACGTTACACTCATAACAAGGAGATGCAGTAAATGTGGCCAGAAGAATTTAAAACTACCTC 1037
| ||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 904 TCACTACACTCATAACAAGGAGATGCAATAAATGTGGCCAGAAGAACGTAAAACTCCCTC 963
Query 1038 TGCTTGGGAATACCTCGATTCTCTCACTCGTGGTTCTGTTATTCTGCTTTGTGGTTGCTA 1097
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 964 TGCTTGGGAATACCTCAATTCTCTCACTCGTGGTTTTGTTATTCTGCTTTGTGGTTGCTA 1023
Query 1098 TCCTCTGGTTTATGAATCGCAAAACTTCGCACGCATGGGCCGGGCAAGATATTTTTGGTA 1157
|||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1024 TCCTCTGGTTTATGAAGCGCAAAACTTCGTATGCATGGGCCGGCCAAGATATTTTTGGTA 1083
Query 1158 TTTGCATGATGATTAATGTCTTGCAAGTAGCTCGGCTACCTAATATCAGGGTTGCTACCA 1217
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1084 TTTGCATGATGATTAATGTCTTGCAAGTGGCTCGGCTACCTAATATCAGGGTTGCTACCA 1143
Query 1218 TTCTTCTCTGTTGTGCATTTTTCTATGACATCTTTTGGGTATTCATATCACCACTAATCT 1277
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1144 TTCTTCTCTGTTGTGCATTTTTCTATGACATCTTTTGGGTATTCCTATCACCACTAATCT 1203
Query 1278 TCAAGCAAAGTGTAATGATTGCGGTTGCACGTGGGAGCAAAGACACTGGAGAATCTATTC 1337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TCAAGCAAAGTGTAATGATTGCGGTTGCACGTGGGAGCAAAGACACTGGAGAATCTATTC 1263
Query 1338 CCATGCTTTTGAGAATTCCACGGCTTTCTGATCCATGGGGTGGTTACAACATGATCGGTT 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 CCATGCTTTTGAGAATTCCACGGCTTTCTGATCCATGGGGTGGTTACAACATGATCGGTT 1323
Query 1398 TTGGAGACATTCTTTTCCCGGGCCTTCTCATATGCTTTATTTTCAGATTTGACAAGGAAA 1457
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1324 TTGGAGACATTCTTTTCCCGGGCCTTCTCATATGCTTTATTTTCAGATATGACAAGGAAA 1383
Query 1458 ATAACAAGGGGGTCTCGAATGGATATTTTCCGTGGTTGATGTTTGGCTACGGACTTGGCC 1517
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 ACAACAAAGGAGTCTCGAATGGATATTTTCCGTGGTTGATGTTTGGCTACGGACTTGGCC 1443
Query 1518 TCTTCTTAACATACTTGGGATTGTATGTTATGAATGGACACGGTCAACCTGCATTGCTAT 1577
| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1444 TTTTCTTAACATACTTGGGATTGTATGTAATGAACGGACACGGTCAACCTGCATTGCTCT 1503
Query 1578 ATCTTGTCCCTTGCACGCTCGGAATCACGGTCATTCTAGGGTTGGTGAGGAAAGAACTCA 1637
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1504 ATCTTGTCCCTTGCACGCTCGGAATCACGGTCATTCTCGGGTTGGTGAGGAGAGAACTCA 1563
Query 1638 GAGACTTGTGGAACTACGGGACTCAACAGCCTTCAGCTGCAGACGTAAATCCATCTCCAG 1697
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1564 GAGACTTGTGGAACTATGGGACTCAACAGCCTTCAGCTGCAGATGTAAATCCATCTCCAG 1623
Query 1698 AAGCATAA 1705
||||||||
Sbjct 1624 AAGCATAA 1631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63953521355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5