BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05830.1
Length=3807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933711 jgi|Araly1|933711|scaffold_401699.1 2477 0.0
Ahg311665 jgi|Araly1|311665|fgenesh1_pm.C_scaffold_1000445 1777 0.0
> Ahg933711 jgi|Araly1|933711|scaffold_401699.1
Length=3241
Score = 2477 bits (1341), Expect = 0.0
Identities = 2308/2766 (83%), Gaps = 102/2766 (4%)
Strand=Plus/Plus
Query 733 TAGCGGAAATAAACAAGATGGATCTTCCCGGAGTAAGAGGAATACTGTCAAGAATCAGGA 792
||| |||||||| ||| |||| || ||||| || ||| || | || |||||||||||||
Sbjct 503 TAGTGGAAATAAGCAAAATGGGTCGTCCCGAAGGAAGGGGTCTTCTATCAAGAATCAGGA 562
Query 793 GAAGGTAGT-TACAGCTTCTGC-TACAGCTAAGAAATGGGTCAGGTTGAGTTATGATGGA 850
||||| || | ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 563 CAAGGT-GTCTTTAGCTTCT-CGTTCAGCTAAGAAATGGGTCAGGTTGAGTTATGATGGT 620
Query 851 GTC-GATCCTA-AACATTTCATTGGGCTGCAATGCAAGGTTTTTTGGCCATTGGATGCTG 908
| | ||||||| || |||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 621 G-CAGATCCTACAA-GTTTCATAGGGCTGCAATGCAAGGTTTTTTGGCCACTGGACGCTC 678
Query 909 TTTGGTATCCTGGTTCTATCGTCGGATATAATGTAGAGACAAAGCATCACATTGTTAAAT 968
|||||||| ||||||||||| ||||||| || |||| ||||| ||| | || |||||
Sbjct 679 TTTGGTATGAAGGTTCTATCGTTGGATATAGTGCCGAGAGAAAGCGTCATACTGCTAAAT 738
Query 969 ATGGAGATGGAGATGGA-GAGGAAT-TAGCTCTTCG-TCGTGAAAAGATCAAGTTTTTAA 1025
|||| |||||| || || |||| || || |||| | |||||||| |||||| |||||
Sbjct 739 ATGGGGATGGATAT-GATGAGG-ATATAATTCTT-GATCGTGAAATGATCAAATTTTTGG 795
Query 1026 TTTCTCGTGACGACATGGAGTTGCTA-AACATGAAGTTTG-GTACTAATGATGTGGTC-G 1082
|||||||||| || |||||| || || | | ||||| ||| |||||| |||||| | |
Sbjct 796 TTTCTCGTGAAGAGATGGAGCTGTTACATC-TGAAG-TTGTGTACTAGTGATGT-AACTG 852
Query 1083 TTGATGGTCAAGATTATGATGA-ACTGGTTATATTGGCTGCTTCTTTTGA-GGAGTGCCA 1140
||| ||| | ||||| ||||| | ||||| ||||||| ||| || | || ||| || ||
Sbjct 853 TTGGTGGCCGTGATTACGATGAGA-TGGTTGTATTGGCAGCTACTCTGGAGGGA-TGTCA 910
Query 1141 AGATTTTGAGCCTAGAGACATCATATGGGCCAAACTAACTGGTCATGCTATGTGGCCAGC 1200
|||||||||| || | ||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 911 AGATTTTGAGACTGGTGACATTGTATGGGCAAAACTAGCTGGTCATGCTATGTGGCCAGC 970
Query 1201 AATTATCGTGGATGAGTCTGTTATTGTAAAGCGGAAAGGTCTAAACAACAAGATCTCTGG 1260
| |||| || ||||| || ||||| | | ||||||||||||||||||||||| | |||||
Sbjct 971 AGTTATTGTAGATGAATCCGTTATCGGAGAGCGGAAAGGTCTAAACAACAAGGTATCTGG 1030
Query 1261 AGGAAGATCAGTCCTCGTACAGTTTTTTGGCACCCATGATTTTGCTAGAATACAAGTCAA 1320
|||| ||||| || | || |||||||||||||| |||||||||||||||||| ||| ||
Sbjct 1031 AGGAGGATCACTCTTGGTCCAGTTTTTTGGCACTCATGATTTTGCTAGAATAAAAG-AAA 1089
Query 1321 A-CAAGCGGTCTCATTTCTAAAAGGGCTTCTCTCACGGTCCCCCCTGAAGTGCAAGCAAC 1379
| ||||| |||| ||| | |||||||||||||| | || | |||||||||||| ||||
Sbjct 1090 AGCAAGCAATCTCGTTTATCAAAGGGCTTCTCTCGCCATCTCACCTGAAGTGCAAACAAC 1149
Query 1380 CTCGGTTTGAAGAGGCCATGGAGGAGGCAAAAATGTACCTAAAAGAATATAAGCTTCCAG 1439
| ||||||||||||| |||| |||| ||||||||||| || || ||| ||| ||||||||
Sbjct 1150 CGCGGTTTGAAGAGGGCATGCAGGAAGCAAAAATGTATCTGAAGGAACATAGGCTTCCAG 1209
Query 1440 GAAGGATGGA-TCAACTTCAGAAAGTTGCTGATACTGATTG-TTCGGAAA-GGATTAATA 1496
|||||| || ||||||||| |||| |||| | || | | ||| |||| | |||||
Sbjct 1210 AAAGGAT-GAGTCAACTTCAAAAAGGAGCTG--A-TG-TCGATTCTGAAATCG-CTAATA 1263
Query 1497 GTGGAGAAGAGGACAGCTCAAACTCGGGTGATGAT-TACACAAAAGATGGAGAAGTCTGG 1555
|| |||||||| | ||||| ||||| |||| | || ||||||||||| |||
Sbjct 1264 GTACAGAAGAGG---G---AAACTTGGGTGGTGATCT-TTTTAATGATGGAGAAGTGTGG 1316
Query 1556 TTGCGGCCAACAGAACTTGGAGA-TTGCTTGCATAGAATAGGCGATCTGCAAATAATTAA 1614
||| | |||||||||| || ||| || ||| |||| |||||| |||||||||||||| ||
Sbjct 1317 TTGAGACCAACAGAACATGTAGACTTCCTT-CATACAATAGGGGATCTGCAAATAATAAA 1375
Query 1615 TCTTGG-AAGGATCGTGACAGACTCAGAATTTTTCAAGGAT-AGTAAGCATACTTGGCCT 1672
|||||| |||| | ||||||||||| | |||||||||||| || || |||| |||||||
Sbjct 1376 TCTTGGAAAGG-TTGTGACAGACTCTCAGTTTTTCAAGGATGAG-AATCATATTTGGCCT 1433
Query 1673 GAAGGGTATACAGCTACAAGAAAATTCATATCACTAAAAGATCCTAATGCATCTGCCATG 1732
||||||||||| |||| ||||| |||| |||||||||||||| || || ||||| ||
Sbjct 1434 GAAGGGTATACGGCTATGAGAAAGTTCACATCACTAAAAGATCATAGTGTGTCTGCTTTG 1493
Query 1733 TACAAGATGGAAGTGCTTAGAGATGCCGAGTCAAAGACTCGCCCTGT-TTTCAGAGTGAC 1791
||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 1494 TACAAGATGGAAGTGCTCAGAGATGCCGAGTCAAAGACTCGCCCTCTGTTT-AGAGTGAC 1552
Query 1792 GACCA-ATAGCGGTGAGCAGTTCAAAGGGGACACTCCATCTGCCTGCTGGAATAAAATAT 1850
|| |||| || ||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1553 -TGCAGATAGTGGAGAGCAGTTCAAAGGGCTTACTCCATCGGCCTGCTGGAATAAGATAT 1611
Query 1851 ATAATAGGATAAAAAAGATTCAG-ATTGCTTCTGATAATCCTGATGTTTTGGGTGAAGG- 1908
|||| ||||||| |||| | ||| ||| || ||||| ||||| |||||||||| | |||
Sbjct 1612 ATAACAGGATAAGAAAGGTCCAGAATT-CTACTGATGATCCTAATGTTTTGGG-GGAGGA 1669
Query 1909 ACTTCATGAATCTGGTACAGATATGTTTGG-CTTCTCCAACCCAGAAGTCGA-TAAACTT 1966
||| ||| ||||||||||||||||||||| ||| |||||||| |||||| | |||||||
Sbjct 1670 ACTAAATGGATCTGGTACAGATATGTTTGGTCTT-TCCAACCCGGAAGTC-ATTAAACTT 1727
Query 1967 ATTCAGGGGCTATTACAATCCAGACCACCTTCCAAGGTTTCTCA-GCGCAAATATAGTTC 2025
| |||| ||| | ||||||||||| | ||||| ||||| || | ||||||||||||
Sbjct 1728 GTACAGGATTTATCAAAATCCAGACCATCGTCCAATGTTTC-CATGTGCAAATATAGTTT 1786
Query 2026 GGGAAAGTATC-AAGATCATCCTACTGGTTACCGACCTGTACGGGTGGAGTGGAAAGATC 2084
||||| | ||| ||| ||| |||||||||| |||||||| || || || ||||||||||
Sbjct 1787 GGGAAGGCATCAAAG-TCAGGCTACTGGTTATCGACCTGTCCGTGTTGACTGGAAAGATC 1845
Query 2085 TTGATAAGTGCAATGTCTGCCACATGGATGAGGAATATGAGAACAATTTGTTCCTGCAAT 2144
| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 1846 TCGATAAGTGCAATGTCTGTTACATGGATGAGGAGTATGAGAACAATTTGTTCCTGCAGT 1905
Query 2145 GTGATAAATGTAGAATGATGGTCCATACTAGATGCTATGGCCAGCTGGAACCCCATAAT- 2203
|||||||||||||||||||||||||| ||| ||||||||| |||| |||||| | ||
Sbjct 1906 GTGATAAATGTAGAATGATGGTCCATGCTAAATGCTATGGAGAGCTAGAACCCTGTGATG 1965
Query 2204 G-GCATTCTGTGGTTATGCAACTTATGTCGTCCTGTCGCTCTTGATATTCCTCCTCGATG 2262
| || || ||||||||||||||||||||||||||| ||||| |||||| ||||| || ||
Sbjct 1966 GTGC-TT-TGTGGTTATGCAACTTATGTCGTCCTGGCGCTCCTGATATACCTCCACGGTG 2023
Query 2263 TTGTCTTTGTCCTGTAGTAGGGGGCGCTATGAAGCCGACAACTGATGGGCGCTGGGCTCA 2322
||||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 2024 TTGTCTTTGTCCTTTAGTAGGTGGTGCTATGAAGCAGACAACTGATGGGCGCTGGGCTCA 2083
Query 2323 TCTGGCTTGTGCCATATGGATCCCAGAAACATGCTTAT-TGGATGTCAAGAAGATGGAAC 2381
||| |||||||| |||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct 2084 TCTTGCTTGTGCTATATGGATCCCAGAAACATGTTTATCT-GATGTCAAGAAGATGGAAC 2142
Query 2382 CGATCGATGGGGTTAAGAAAGTCAGTAAGGATCGTTGGAAACTATTGTGCAGCATCTGTG 2441
|||| |||||||| || ||||||||||||||||| |||||| || |||||| |||||| |
Sbjct 2143 CGATTGATGGGGTGAATAAAGTCAGTAAGGATCGCTGGAAATTAATGTGCACCATCTGCG 2202
Query 2442 GTGTATCTTATGGAGCTTGTATCCAATGTTCAAATAATACTTGTCGAGTGGCATATCATC 2501
| ||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||||
Sbjct 2203 GGGTATCTTATGGAGCTTGTATCCAATGTTCGAACAATTCTTGTCGTGTGGCATATCATC 2262
Query 2502 CGCTATGTGCACGAGCTGCTGGTCTCTGTGTTGAGCTTGCAGA-TGAGGATAGGCTTTTT 2560
| || || || |||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct 2263 CTCTCTGCGCGCGAGCTGCTGGTCTCTGTGTTGAGCTTG-AGAATGAGGATAGACTTTTT 2321
Query 2561 CTTCTA-TCAATGGATGACGATGAAGCAGATCAGTGCATCCGCCTGCTTTCATTTTGCAA 2619
|||| | ||| |||| || || |||||||||||||| |||||| |||||||||| |||||
Sbjct 2322 CTTC-AGTCAGTGGAGGATGAAGAAGCAGATCAGTGTATCCGCATGCTTTCATTCTGCAA 2380
Query 2620 GAGGCATCGACAAACGTCAAATTACCA-CCTAGAAACAGAGTACATGATCAAA-CC-TG- 2675
||||||||||||||| |||| | || ||||| | |||| ||| ||| ||| || |
Sbjct 2381 GAGGCATCGACAAACATCAACTG-CCTGCCTAGGATCAGAAAACAGGATAAAATCCGTTA 2439
Query 2676 CTCACAATA-TTGCCGAGTATCTCCCACCTCCTAATCCATCTGGCTGTGCTCGCACTGAG 2734
|||| || | || |||||||||||||||| |||||||||||||||| |||||| ||||||
Sbjct 2440 CTCAGAAAACTT-CCGAGTATCTCCCACCACCTAATCCATCTGGCTCTGCTCGGACTGAG 2498
Query 2735 CCATATAATTATCTT-GGAAGAAGAGGACG-AAAGGAACCTGAAGCTCTTGCTGGTGCTT 2792
|| ||||||| ||| || |||||||| || |||| |||||||||||||||||| |||||
Sbjct 2499 CCTTATAATTG-CTTTGGCAGAAGAGGGCGGAAAG-AACCTGAAGCTCTTGCTGCTGCTT 2556
Query 2793 CTTCAAAGCGATTATTTGTTGAGAATCAACCGTATATTGTTGGCGGATACTCTCGACATG 2852
|||||||||| ||||||||||||||||| || ||| || |||| || |||||| || ||
Sbjct 2557 CTTCAAAGCGGTTATTTGTTGAGAATCAGCCATATGTTATTGGTGGTTACTCTAAACTTG 2616
Query 2853 AATTTTCAACCTACGAACGCATTTATGGATCAAAGATGTCCCAAAT-AACTACTCCGAGC 2911
| |||||||| || ||| ||||| | ||||| ||| |||| || || || |||||| |||
Sbjct 2617 AGTTTTCAACTTATGAATGCATTCACGGATCCAAGGTGTCACAGATGAA-TACTCCAAGC 2675
Query 2912 AATATTCTATCTATGGCCGAGAAATATACATTCATGAAGGAAACCTACAGGAAGAGATTA 2971
|| ||||| |||||||| |||||||||| || |||||||||||| |||||||||||| |
Sbjct 2676 AACATTCTTTCTATGGCTGAGAAATATAGATACATGAAGGAAACATACAGGAAGAGACTG 2735
Query 2972 GCATTCGGGAAATCGGGAATTCATGGTTTTGGGATCTTTGCAAAGCTTCCGCACAGAG-C 3030
||||| |||||||| ||||||||||||||||| || || ||||| |||||||||| || |
Sbjct 2736 GCATTTGGGAAATCAGGAATTCATGGTTTTGGCATATTCGCAAAACTTCCGCACA-AGGC 2794
Query 3031 CGGAGATATGGTGATTGAGTACACTGGTGAACTTGTTAGGCCACCAATAGCTGACAAGAG 3090
|||||||||| ||||||| ||||| || ||||||||||| || | ||||||||||| ||
Sbjct 2795 CGGAGATATGATGATTGAATACACCGGAGAACTTGTTAGACCGTCTATAGCTGACAAAAG 2854
Query 3091 AGAGCATCTTATATACAACTCAATGGTGGGTGCCGGGACCTATATGTTTAGAATTGATAA 3150
||| | |||||| ||||| |||||||||||||| ||||| || ||||||||||||||| |
Sbjct 2855 AGAACGTCTTATCTACAATTCAATGGTGGGTGCAGGGACTTACATGTTTAGAATTGATGA 2914
Query 3151 TGAGCGGGTCATAGACGCAACAAGGACAGGAAGCATTGCTCACCTTATCAATCATTCATG 3210
| | || |||||||| || |||||| ||||||||||||| ||||| || |||||||| ||
Sbjct 2915 TAAACGAGTCATAGATGCTACAAGGGCAGGAAGCATTGCCCACCTGATTAATCATTCCTG 2974
Query 3211 TGAGCCAAATTGCTATTCAAGAGTCATCAGTGTTAATGGTGATGAGCATATTATCATATT 3270
|| ||| |||||||||||||||||||||| ||||||||| || ||||| |||||||| ||
Sbjct 2975 TGTGCCCAATTGCTATTCAAGAGTCATCACTGTTAATGGAGAGGAGCACATTATCAT-TT 3033
Query 3271 T-GCAAAGAGAGATGTCGCAAAATGGGAGGAGCTGACCTATGATTATAGGTTCTTTTCAA 3329
| |||||||| ||| || | |||||||| |||||||||||||| ||||||||||||||||
Sbjct 3034 TCGCAAAGAGGGATATCCCTAAATGGGAAGAGCTGACCTATGACTATAGGTTCTTTTCAA 3093
Query 3330 TTGATGAGCGCCTTGCATGTT-ACTGTGGTTTCCCAAGA-TGCCGGGGTGTTGTTAATGA 3387
||| |||||||||| |||||| | ||||| |||| ||| || || |||||||| |||||
Sbjct 3094 TTGGTGAGCGCCTTTCATGTTCA-TGTGGGTTCC-AAGGGTGTCGAGGTGTTGTGAATGA 3151
Query 3388 CACAGAAGCCGAAGAACGACAGGC-AAA-TATTCATGCTTC-TCGCTGTGAGTTAAAAGA 3444
|||||||| |||| || |||| | ||| ||| || ||| ||| ||||| ||| |||
Sbjct 3152 TACAGAAGCAGAAGCACAACAGTCGAAAATATG--TG-TTCCTCGTTGTGAACTAATAGA 3208
Query 3445 GTGGAC 3450
|||||
Sbjct 3209 CTGGAC 3214
> Ahg311665 jgi|Araly1|311665|fgenesh1_pm.C_scaffold_1000445
Length=3621
Score = 1777 bits (962), Expect = 0.0
Identities = 1083/1139 (95%), Gaps = 17/1139 (1%)
Strand=Plus/Plus
Query 1414 GTACCTAAAAGAATATAAGCTTCCAGGAAGGATGGATCAACTTCAGAAAGTTGCTGATAC 1473
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1110 GTACCTAAAAGAATATAAGCTTCCAGGAAGGATGGATCAACTTCAAAAAGTTGCTGATAC 1169
Query 1474 TGATTGTTCGGAAAGGATTAATAGTGGAGAAGAGGACAGCTCAAACTCGGGTGATGATTA 1533
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TGATTGTTCGGAAAGGACTAATAGTGGAGAAGAGGACAGCTCAAACTCGGGTGATGATTA 1229
Query 1534 CACAAAAGATGGAGAAGTCTGGTTGCGGCCAACA-GAACTTGGAGATTGCTTGCATAGAA 1592
|||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||
Sbjct 1230 CACAAAAGATGGAGAAGTCTGGTTGCAACCAACAGGAA-TTGGAGATTGCTTGCATAGAA 1288
Query 1593 TAGGCGATCTGCAAATAATTAATCTTGGAAGGATCGTGACAGACTCAGAATTTTTCAAGG 1652
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1289 TAGGCGATCTGCAAATAATGAACCTTGGAAGGATCGTGACAGACTCAGAATTTTTCAAGG 1348
Query 1653 ATAGTAAGCATACTTGGCCTGAAGGGTATACAGCTACAAGAAAATTCATATCACTAAAAG 1712
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1349 ATAGTAAGCATACTTGGCCTGAAGGGTATACAGCTATAAGAAAATTTATATCACTAAAAG 1408
Query 1713 ATCCTAATGCATCTGCCATGTACAAGATGGAAGTGCTTAGAGATGCCGAGTCAAAGACTC 1772
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1409 ATCCTGATGCATCTGCCATGTACAAGATGGAAGTGCTTAGAGATGCCGAGTCAAAAAATC 1468
Query 1773 GCCCTGTTTTCAGAGTGACGACCAATAGCGGTGAGCAGTTCAAAGGGGACACTCCATCTG 1832
|||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1469 GCCCTGTTTTCAGAGTTACAACCAACAGCGGTGAGCAGTTCAAAGGGGACACTCCATCTG 1528
Query 1833 CCTGCTGGAATAAAATATATAATAGGATAAAAAAGATTCAGATTGCTTCTGATAATCCTG 1892
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1529 CCTGCTGGAATAAAATATATAATAGGATAAAAAAGATTCAGAGTGCTTCTGATGGTCCTG 1588
Query 1893 ATGTTTTGGGTGAAGGACTTCATGAATCTGGTACAGATATGTTTGGCTTCTCCAACCCAG 1952
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 ATGGTTTGGGTGAAGGACTTCATGAATCTGGTACAGATATGTTTGGCTTCTCCAACCCAG 1648
Query 1953 AAGTCGATAAACTTATTCAGGGGCTATTACAATCCAGACCACCTTCCAAGGTTTCTCAGC 2012
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1649 AAGTCGATAAACTTATTCAGGGGCTATTACAATCTAGACCACCTTCCAAGGTTTCTCAGC 1708
Query 2013 GCAAATATAGTTCGGGAAAGTATCAAGATCATCCTACTGGTTACCGACCTGTACGGGTGG 2072
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1709 GCAAATATAGTTCCGGAAAGTATCAAGATCATCCTACTGGTTACCGACCTGTACGGGTGG 1768
Query 2073 AGTGGAAAGATCTTGATAAGTGCAATGTCTGCCACATGGATGAGGAATATGAGAACAATT 2132
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 ACTGGAAAGATCTTGATAAGTGCAATGTCTGCCACATGGATGAGGAATATGAGAACAATT 1828
Query 2133 TGTTCCTGCAATGTGATAAATGTAGAATGATGGTCCATACTAGATGCTATGGCCAGCTGG 2192
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1829 TGTTCTTGCAATGTGATAAATGTAGAATGATGGTCCATACTAGATGCTATGGGCAGCTAG 1888
Query 2193 AACCCCATAATGGCATTCTGTGGTTATGCAACTTATGTCGTCCTGTCGCTCTTGATATTC 2252
|||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1889 AACCCCGTGATGGCATTCTGTGGTTATGCAACTTATGTCGTCCTGGCGCTCTTGATATTC 1948
Query 2253 CTCCTCGATGTTGTCTTTGTCCTGTAG--------TA-------GGGGGCGCTATGAAGC 2297
|||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1949 CTCCTCGATGTTGTCTTTGTCCTGTACCAACAAAATATCTTTCAGGGGGCGCTATGAAGC 2008
Query 2298 CGACAACTGATGGGCGCTGGGCTCATCTGGCTTGTGCCATATGGATCCCAGAAACATGCT 2357
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2009 CGACAACTGATGGGCGCTGGGCTCATCTGGCGTGTGCCATATGGATCCCAGAAACCTGCT 2068
Query 2358 TATTGGATGTCAAGAAGATGGAACCGATCGATGGGGTTAAGAAAGTCAGTAAGGATCGTT 2417
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 2069 TATTGGATGTCAAGAAGATGGAACCGATCGATGGAGTTAATAAAGTCAATAAGGATCGTT 2128
Query 2418 GGAAACTATTGTGCAGCATCTGTGGTGTATCTTATGGAGCTTGTATCCAATGTTCAAATA 2477
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2129 GGAAATTGTTGTGCAGCATCTGTGGTGTATCTTATGGAGCTTGTATCCAATGTTCAAATA 2188
Query 2478 ATACTTGTCGAGTGGCATATCATCCGCTATGTGCACGAGCTGCTGGTCTCTGTGTTGAG 2536
| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2189 GTTCTTGTCGAGTGGCATATCATCCACTATGTGCACGTGCTGCTGGTCTCTGTGTTGAG 2247
Score = 1498 bits (811), Expect = 0.0
Identities = 867/895 (97%), Gaps = 0/895 (0%)
Strand=Plus/Plus
Query 2537 CTTGCAGATGAGGATAGGCTTTTTCTTCTATCAATGGATGACGATGAAGCAGATCAGTGC 2596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2299 CTTGCAGATGAGGATAGGCTTTTTCTTCTATCAATGGATGACGATGAAGCAGATCAGTGC 2358
Query 2597 ATCCGCCTGCTTTCATTTTGCAAGAGGCATCGACAAACGTCAAATTACCACCTAGAAACA 2656
|||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||
Sbjct 2359 ATCCGCCTGCTTTCATTTTGCAAGAGGCATCGACAAACATCAAATGACCACTTAGAAACA 2418
Query 2657 GAGTACATGATCAAACCTGCTCACAATATTGCCGAGTATCTCCCACCTCCTAATCCATCT 2716
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2419 GAGTACATGATCAAACCAGCTCATAATATTGCCGAGTATCTCCCACCTCCTAATCCATCT 2478
Query 2717 GGCTGTGCTCGCACTGAGCCATATAATTATCTTGGAAGAAGAGGACGAAAGGAACCTGAA 2776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2479 GGCTGTGCTCGCACTGAGCCATATAATTATCTTGGAAGAAGAGGACGAAAGGAACCTGAA 2538
Query 2777 GCTCTTGCTGGTGCTTCTTCAAAGCGATTATTTGTTGAGAATCAACCGTATATTGTTGGC 2836
||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 2539 GCTCTTGCTGGTGCTTCTTCAAAACGATTATTTGTTGAGAATCAGCCGTACATTGTTGGT 2598
Query 2837 GGATACTCTCGACATGAATTTTCAACCTACGAACGCATTTATGGATCAAAGATGTCCCAA 2896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2599 GGATACTCTCGACATGAATTTTCAACCTACGAACGCATTTATGGATCAAAGATGTCACAA 2658
Query 2897 ATAACTACTCCGAGCAATATTCTATCTATGGCCGAGAAATATACATTCATGAAGGAAACC 2956
|||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2659 ATAATTACTCCAAGCAATATTCTATCTATGGCTGAGAAATATACATTCATGAAGGAAACG 2718
Query 2957 TACAGGAAGAGATTAGCATTCGGGAAATCGGGAATTCATGGTTTTGGGATCTTTGCAAAG 3016
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2719 TACAGGAAGAGATTAGCATTTGGGAAATCGGGAATTCATGGTTTTGGGATCTTTGCAAAG 2778
Query 3017 CTTCCGCACAGAGCCGGAGATATGGTGATTGAGTACACTGGTGAACTTGTTAGGCCACCA 3076
||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2779 CTTCCGCACAGGGCGGGAGATATGATGATTGAGTACACTGGTGAACTTGTTAGGCCACCA 2838
Query 3077 ATAGCTGACAAGAGAGAGCATCTTATATACAACTCAATGGTGGGTGCCGGGACCTATATG 3136
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2839 ATAGCTGACAAGAGAGAGCATCTTATATACAACTCAATGGTGGGTGCTGGGACCTATATG 2898
Query 3137 TTTAGAATTGATAATGAGCGGGTCATAGACGCAACAAGGACAGGAAGCATTGCTCACCTT 3196
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 2899 TTTAGAATTGATAATGAGCGAGTCATAGACGCAACAAGGACAGGCAGCATTGCCCACCTC 2958
Query 3197 ATCAATCATTCATGTGAGCCAAATTGCTATTCAAGAGTCATCAGTGTTAATGGTGATGAG 3256
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2959 ATCAATCACTCATGTGAGCCAAATTGCTATTCAAGAGTCATTAGTGTTAATGGTGATGAG 3018
Query 3257 CATATTATCATATTTGCAAAGAGAGATGTCGCAAAATGGGAGGAGCTGACCTATGATTAT 3316
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 3019 CATATTATCATATTTGCAAAGAGAGATGTTGCAAAATGGGAGGAGCTGACCTATGACTAT 3078
Query 3317 AGGTTCTTTTCAATTGATGAGCGCCTTGCATGTTACTGTGGTTTCCCAAGATGCCGGGGT 3376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3079 AGGTTCTTTTCAATTGATGAGCGCCTTGCATGTTACTGTGGTTTCCCAAGATGCCGGGGT 3138
Query 3377 GTTGTTAATGACACAGAAGCCGAAGAACGACAGGCAAATATTCATGCTTCTCGCT 3431
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3139 GTTGTTAATGACACAGAAGCCGAAGAACAACAGGCAAATATTCATGCTTCTCGCT 3193
Score = 1411 bits (764), Expect = 0.0
Identities = 1012/1123 (90%), Gaps = 52/1123 (5%)
Strand=Plus/Plus
Query 218 ATGTCGTGTGTCCCAAAA------GAAGAAGAAGGAGAAGATACCCAAATCAAAACCGAA 271
|||||||||||||||||| || ||||||| |||||||| ||||||||||||||||
Sbjct 1 ATGTCGTGTGTCCCAAAACCTTTGGAGGAAGAAGAAGAAGATATCCAAATCAAAACCGAA 60
Query 272 CTCCACGACCACGCTGCTGATAATCCTGTTCGTTACGCCTCTCTTGAGAGCGTTTACTCC 331
||||| ||||||| | ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTCCATGACCACG--G-TGATATTCCTGTTCGTTACGCCTCTCTTGAGAGCGTCTACTCC 117
Query 332 GTTTCCTCTTCCTCGTCTTCATTGTGTTGCAAGACCGCCGCTGGTTCCCACAAGAAGGTC 391
||||| |||||||| ||||| |||||||| | | |||||||||||| ||||||||||||
Sbjct 118 GTTTCTTCTTCCTCCTCTTCGTTGTGTTGTATTAGCGCCGCTGGTTCACACAAGAAGGTC 177
Query 392 AATGCCCTCAAGCTCCCAATGAGCGATAGTTTTGAGTTGCAGCCTCATCGGCGACCGGAG 451
||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 AATGCCCAGAAGAACCCAATGACCGATAGTTTTGAGTTGCAGCCTCATCGGCGACCGGAG 237
Query 452 ATTGTTCACGTCTATTGTCGCCGTAAGAGGAGGAGGCGGCGGCGGAGGGAGTCTTTCCTT 511
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 238 ATTGTTCACGTCTATTGTCGCCGTAAGAGGAGGCGGCGGCGGCGGAGGGAGTCTTTCGTT 297
Query 512 GAGTTAGCAATACTTCAGAATGAGGGAGTGGAGAGAGATGATCGGATTGTGAAAATTGAA 571
||| ||||| ||||||||||||| || || | || ||| ||||||| |||||||||
Sbjct 298 GAGCTAGCATTACTTCAGAATGA--GA---GA-A-AG--GATGGGATTGTAAAAATTGAA 348
Query 572 AGTGCGGAGCTTGATGATgagaaggaggaggagaataagaagaagaagcagaagaaaagg 631
| ||||||||||||||| | | ||||||||||| | |||||||||||||| |||||||||
Sbjct 349 AATGCGGAGCTTGATGA-G-G-AGGAGGAGGAGGAGAAGAAGAAGAAGCACAAGAAAAGG 405
Query 632 aggaTTGGTAATGGCGAGCTCATGAAACTGGGCGTGGATTCGACTACTTTAAGCGTCTCT 691
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 406 AGGATTGGTAATGGCGAGCTCATGAAATTGGGTGTGGATTCCACTACTTTAAGCGTCTCT 465
Query 692 GCTACCCCGCCTTTACGGGGATGTCGAATTAAAGCTGTGTGTAGCGGAAATAAACAAGAT 751
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GCTTCCCCGCCTTTACGGGGATGTCGAATTAAAGCTGTGTGTAGCGGAAATAAACAAGAT 525
Query 752 GGATCTTCCCGGAGTAAGAGGAATACTGTCAAGAATCAGGAGAAGGTAGT-TACAGCTTC 810
|||||||||||||||||||||| | |||||| |||||||||||||| || | |||||||
Sbjct 526 GGATCTTCCCGGAGTAAGAGGAGTTTTGTCAAAAATCAGGAGAAGGTTGTCT-CAGCTTC 584
Query 811 TGCTACAGCTAAGAAATGGGTCAGGTTGAGTTATGATGGAGTCGATCCTAAACATTTCAT 870
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 585 TGCTACAGCTAAGAAATGGGTCAGGTTGAGTTATGATGGTGTCGATCCTAAAAATTTCAT 644
Query 871 T-GG--GC--T-----GCAA----T--GC-----A---A---GGTTTTTTGGCCATTGGA 903
| || || | |||| | || | | ||||||||||||||||||
Sbjct 645 TGGGCTGCAATGCAAGGCAAGCTTTCAGCTATATAGTTATGTGGTTTTTTGGCCATTGGA 704
Query 904 TGCTGTTTGGTATCCTGGTTCTATCGTCGGATATAATGTAGAGACAAAGCATCACATTGT 963
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 705 TGCTGTTTGGTATCCTGGTTCTATCGTCAGATATAATGTAGAGACAAAGCATCACATTGT 764
Query 964 TAAATATGGAGATGGAGATGGAGAGGAATTAGCTCTTCGTCGTGAAAAGATCAAGTTTTT 1023
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 765 CAAATATGGAGATGGAGATGGCGAGGAATTAGCTCTTCGTCGGGAAAAGATCAAATTTTT 824
Query 1024 AATTTCTCGTGACGACATGGAGTTGCTAAACATGAAGTTTGGTACTAATGATGTGGTCGT 1083
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 825 AATTTCTCGTGACGAGATGGAGTTGCTAAACATGAAGTTCGGTACTAATGATGTCGCCGT 884
Query 1084 TGATGGTCAAGATTATGATGAACTGGTTATATTGGCTGCTTCTTTTGAGGAGTGCCAAGA 1143
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 885 TCATGGTCAAGATTATGATGAACTGGTTATATTGGCTGCTTCTTTTGAGGATTGCCATGA 944
Query 1144 TTTTGAGCCTAGAGACATCATATGGGCCAAACTAACTGGTCATGCTATGTGGCCAGCAAT 1203
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 945 TTTTGAGCCTAGAGACATCATATGGGCGAAACTAACAGGTCATGCTATGTGGCCAGCAAT 1004
Query 1204 TATCGTGGATGAGTCTGTTATTGTAAAGCGGAAAGGTCTAAACAACAAGATC-TCTGGAG 1262
||| || |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1005 TATTGTTGATGAGTCTGTTATTGTAAAGCGGAAAGGTCTAAACAACAAGG-CATCTGGAG 1063
Query 1263 GAAGATCAGTCCTCGTACAGTTTTTTGGCACCCATGATTTTGC 1305
||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1064 GAAGATCTGTCCTCGTACAGTTTTTCGGCACCCATGATTTTGC 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143857625940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5