BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05840.1
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470595 jgi|Araly1|470595|fgenesh2_kg.1__549__AT1G05840.1 2704 0.0
Ahg891239 jgi|Araly1|891239|Al_scaffold_0007_3225 111 1e-23
> Ahg470595 jgi|Araly1|470595|fgenesh2_kg.1__549__AT1G05840.1
Length=1695
Score = 2704 bits (1464), Expect = 0.0
Identities = 1628/1705 (95%), Gaps = 20/1705 (1%)
Strand=Plus/Plus
Query 4 AACAAACTCTGTAATTTCTGAACTTCCtcgtcgtcgtcgtcgtcgCCGCCGGTCCGGTGG 63
||||||||||| ||||||||||||| | | ||||||||||||| ||||||||||||||
Sbjct 1 AACAAACTCTGGAATTTCTGAACTT-C-C-TCGTCGTCGTCGT---CGCCGGTCCGGTGG 54
Query 64 TTTCTTTCAACTTCTCCGCCGAGACGACTGACGCTGTAAACATCAGGCACGTGGGAAGAA 123
||||| |||||||||||||||||||||||| |||| |||| | |||||||| ||||||||
Sbjct 55 TTTCTCTCAACTTCTCCGCCGAGACGACTGGCGCTATAAAAAACAGGCACGGGGGAAGAA 114
Query 124 GAAAGAAGATGACTTTATCAATCGTATCTTTCCCCATCTGCGGAA-GATTCACGCTGATT 182
| ||||||||||| || |||||||| |||||||||||||||| || || |||||||||||
Sbjct 115 GGAAGAAGATGACCTTCTCAATCGTCTCTTTCCCCATCTGCGCAAGGA-TCACGCTGATT 173
Query 183 TGGTTTCTCACTGCTCTTGTTTCCGTCTCTTGTAATCCCGGAGTGTTCAATGTAAAGTAC 242
|||||||||||| ||||| ||||||| |||| |||||||||||| |||||||| ||||||
Sbjct 174 TGGTTTCTCACTTCTCTTATTTCCGTATCTTCTAATCCCGGAGTCTTCAATGTTAAGTAC 233
Query 243 CGTTATCCAAGGCTTCAAGGGTCCTTGACCGCCTTAAAGGAGCACGATGACCGGCGTCAG 302
||||||||| ||||||||||||| || | ||||||||||||||| |||||||||||||||
Sbjct 234 CGTTATCCACGGCTTCAAGGGTCTTTAAGCGCCTTAAAGGAGCATGATGACCGGCGTCAG 293
Query 303 CTCACAATTCTCGCTGGAATCGATCTACCCCTTGGTGGAACTGGTCGCCCTGATATCCCC 362
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 294 CTCACAATTCTCGCCGGAATCGATCTACCCCTTGGTGGAACTGGTCGTCCTGATATCCCC 353
Query 363 GGGCTTTATTATGCAAAAATTGGAATTGGAACACCTGCTAAGAGCTATTATGTTCAAGTC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 GGGCTTTATTATGCAAAAATTGGAATTGGAACACCTGCTAAGAGCTATTATGTTCAAGTC 413
Query 423 GACACAGGGAGTGATATTATGTGGGTTAACTGCATCCAGTGCAAACAATGTCCAAGACGA 482
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 414 GACACAGGCAGTGATATTATGTGGGTTAACTGTATCCAGTGCAAACAATGTCCAAGACGA 473
Query 483 AGCACTCTCGGTATTGAGCTTACACTCTACAACATTGACGAATCAGACAGTGGAAAGTTG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AGCACTCTCGGTATTGAGCTTACACTCTACAACATTGACGAATCAGACAGTGGAAAGTTG 533
Query 543 GTCTCTTGTGATGATGATTTTTGCTACCAGATTAGTGGTGGTCCTCTCTCTGGCTGCAAA 602
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 534 GTCTCTTGTGATGATGATTTTTGCTATCAGATTAGTGGTGGTCCTCTCTCAGGCTGCAAA 593
Query 603 GCTAATATGTCTTGTCCTTATCTTGAGATATATGGAGATGGTAGCTCTACTGCTGGTTAT 662
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 594 GCTAATATGTCTTGTCCTTATCTTGAGATTTATGGAGATGGTAGCTCTACTGCTGGTTAT 653
Query 663 TTTGTCAAAGATGTTGTGCAGTATGACAGTGTAGCTGGTGATCTCAAGACTCAAACAGCT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTTGTCAAAGATGTTGTGCAGTATGACAGTGTAGCTGGTGATCTCAAGACTCAAACAGCT 713
Query 723 AATGGCAGTGTCATTTTTGGGTGTGGTGCTAGGCAGTCAGGAGATCTAGACTCTTCTAAT 782
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AATGGGAGTGTCATATTTGGGTGTGGTGCTAGGCAGTCAGGAGATCTAGACTCTTCTAAT 773
Query 783 GAAGAAGCACTTGACGGAATACTTGGATTTGGGAAAGCTAATTCTTCCATGATTTCCCAG 842
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 774 GAAGAAGCACTTGACGGAATACTTGGATTTGGGAAAGCTAATTCCTCCATGATTTCCCAG 833
Query 843 CTGGCCTCATCAGGGAGAGTGAAAAAGATATTTGCTCATTGCTTAGATGGAAGAAATGGA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CTGGCCTCATCAGGGAGAGTGAAAAAGATATTTGCTCATTGCTTAGATGGAAGAAATGGA 893
Query 903 GGTGGTATATTTGCTATTGGACGTGTTGTGCAACCAAAAGTAAACATGACACCATTGGTA 962
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGTGGTATATTTGCTATTGGGCGTGTTGTGCAACCAAAAGTAAACATGACACCATTGGTA 953
Query 963 CCCAATCAACCACATTACAATGTCAATATGACAGCAGTTCAAGTTGGTCAGGAGTTTCTA 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 954 CCCAATCAACCACATTACAATGTCAATATGACAGCAGTTCAAGTTGGTCAGGAGTTCCTA 1013
Query 1023 ACTATCCCAGCCGATTTATTTCAACCTGGAGATAGAAAAGGAGCGATAATTGACAGTGGT 1082
| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1014 AATATCCCAGCGGATTTATTTCAGCCTGGAGATAGAAAAGGAGCGATAATTGACAGTGGT 1073
Query 1083 ACAACCTTGGCCTATCTTCCAGAGATAATCTATGAACCATTGGTGAAGAAGATAACCTCG 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 ACAACCTTGGCCTATCTTCCAGAGATAATCTATGAACCATTGGTGAAGAAGATAACCTCG 1133
Query 1143 CAGGAGCCTGCTCTAAAAGTTCACATAGTGGATAAAGATTATAAATGCTTTCAGTACTCT 1202
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CAGGAGCCTGCTCTGAAAGTTCACATAGTGGATAAAGATTATAAATGCTTTCAGTACTCT 1193
Query 1203 GGCAGAGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTTTTCCTC 1262
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1194 GGAAGAGTTGATGAGGGGTTTCCGAATGTCACTTTCCATTTCGAGAACTCGGTATTCCTC 1253
Query 1263 AGGGTTTATCCTCATGACTATCTGTTCCCTCATGAAGGAATGTGGTGCATTGGTTGGCAA 1322
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1254 AGGGTTTATCCTCATGACTATTTGTTCCCTTATGAAGGAATGTGGTGCATTGGTTGGCAA 1313
Query 1323 AATAGCGCAATGCAATCCAGAGATAGGAGAAACATGACACTTTTGGGAGATTTGGTGCTT 1382
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AATAGCGCAATGCAATCCAGGGATAGGAGAAACATGACACTTTTGGGAGATTTGGTGCTT 1373
Query 1383 TCAAACAAGCTTGTTCTCTACGATCTCGAAAATCAGCTCATTGGGTGGACTGAATACAAC 1442
|||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1374 TCAAACAAACTTGTTCTCTACGATCTCGAAAATCAGCTCATTGGATGGACCGAGTACAAC 1433
Query 1443 TGCTCATCAAGCATAAAAGTAAAAGACGAAGGCACAGGAACAGTTCATCTAGTAGGCTCA 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 TGCTCATCAAGCATAAAAGTAAAAGACGAAGGCACAGGAACAGTTCATCTAGTAGGCTCA 1493
Query 1503 CATTTTATCTCTTCTGCATTACCTTTGGATACCTCTATGTGTCTTCTATTTTCTTTACTT 1562
|||||||||||||||||||||||||||||||||| | ||| | | ||| ||||| |||||
Sbjct 1494 CATTTTATCTCTTCTGCATTACCTTTGGATACCTGTCTGT-T-T-CTACTTTCTGTACTT 1550
Query 1563 CTCCTCATGACTCTTTTCCTCCTTTAGAGACTCCTTATAGTTTATCTTTTGTACATAGAT 1622
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CTCCTCATGACTATGTTCCTCCTTTAGAGACTCCTTATAGTTTATCTTTTGTACATAGAT 1610
Query 1623 TCAACATTTTGCTAAAATGGTAAAGAAAAA-------GGTCTGATATATA--GATAATAC 1673
|||||||||||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 1611 TCAACATTTTGCTAAAATGGTAAAAAAAAAAAAAAAAGGTCTGATATATATAGATAATAC 1670
Query 1674 GAAGAAACCCAGCAGATTGATGATG 1698
|||||| |||||||||||||||||
Sbjct 1671 AAAGAAAACCAGCAGATTGATGATG 1695
> Ahg891239 jgi|Araly1|891239|Al_scaffold_0007_3225
Length=1443
Score = 111 bits (60), Expect = 1e-23
Identities = 166/214 (78%), Gaps = 19/214 (9%)
Strand=Plus/Plus
Query 1266 GTTTATCCTCATGACTATCTGTTC-C-C-TCATGAAGGA-ATGTGGTGCATTGGTTGGCA 1321
|||||||| ||||||||||| ||| | | || |||| || |||| ||| ||||||||||
Sbjct 1114 GTTTATCCGCATGACTATCTTTTCTCACTTCGTGAA-GATATGTATTGCTTTGGTTGGCA 1172
Query 1322 AAATAGCGCAATG-CAATC-CAGAGATAGGAGAAAC-ATG--A-CACTTTTGGGAGATTT 1375
| | | | |||| | | | ||| || |||| | ||| | | ||||||||||||||
Sbjct 1173 ATCTGGTGGAATGACGA-CGCAG-GA-CGGAG--CCGATGTAATC-CTTTTGGGAGATTT 1226
Query 1376 GGTGCTTTCAAACAAGCTT-GTTCTCTACGATCTCGAAAATCAGCTCATTGGGTGGACTG 1434
|||||||||||||||| || || | |||||||| || ||| || ||||||| ||| |||
Sbjct 1227 GGTGCTTTCAAACAAG-TTAGTAGTATACGATCTGGAGAATGAGGTCATTGGATGGGCTG 1285
Query 1435 AATACAACTGCTCATCAAGCATAAAAGTAAAAGA 1468
| ||||||| || |||||||| ||||| |||||
Sbjct 1286 ACCACAACTGTTCGTCAAGCATCAAAGTGAAAGA 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63686889640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5