BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G05860.1 Length=1176 Score E Sequences producing significant alignments: (Bits) Value Ahg470597 jgi|Araly1|470597|fgenesh2_kg.1__551__AT1G05860.1 1515 0.0 > Ahg470597 jgi|Araly1|470597|fgenesh2_kg.1__551__AT1G05860.1 Length=1051 Score = 1515 bits (820), Expect = 0.0 Identities = 988/1066 (93%), Gaps = 23/1066 (2%) Strand=Plus/Plus Query 6 TCGCCACTCTCTTTCTCTCTCCCTTGTTTTCCAACAGT---AACAATGGCGTCAGCTTCC 62 ||||||||||| || ||||| | ||||||||||||||| |||||||||||||||||| Sbjct 1 TCGCCACTCTC-TT-TCTCT-CGTTGTTTTCCAACAGTAACAACAATGGCGTCAGCTTCG 57 Query 63 AAGCAAAACCCTTCTTCTTCCAAACCTCCTAGGCATCCATCTCCGATCATTGCTTCAACC 122 ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || | | Sbjct 58 AAGCAAAACCCTTCTTCATCCAAACCTCCTAGGCATCCATCTCCGATCACTGCGTCTATC 117 Query 123 CCCTCGAAATCCGGTGTAT-TGGAGGAATCCCAATTTCGAAACCCTAATAACCCGTCGAC 181 ||||| ||||||||||||| | || ||||||||||||||||||||||||||||| ||||| Sbjct 118 CCCTCTAAATCCGGTGTATCT-GAAGAATCCCAATTTCGAAACCCTAATAACCCTTCGAC 176 Query 182 GTCATCGAATTCACCGATTTCGATGGCGGTGGAGGATCAGATCCTGGGAAATTCCAATCA 241 ||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| || Sbjct 177 GTCGTCGAATTCACCGATTTCGATGGCTGTGGAGGATCAGATCCTGGGAAGTTCCAGCCA 236 Query 242 CCTCACTCGCCCGGAGCTTCTCCGACGCAGATCGCACAACCTGAAGCAGCTCTCTAGATG 301 | |||| ||||||||||||||||||||||||||||| |||||||| |||||| ||||||| Sbjct 237 CATCACACGCCCGGAGCTTCTCCGACGCAGATCGCATAACCTGAAACAGCTCGCTAGATG 296 Query 302 CTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCACAACATAGATATTATAG 361 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 297 TTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCGCAACACAGATATTATAG 356 Query 362 CTGGAACTATGGTGTTAGTCCTTTCAAAGATGAGAATTATCACCAAAACAAGAGACGTAA 421 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 357 CTGGAACTATGGTGTTAGTCCTTTCAAAGATGAGAATCATCAGCAAAACAAGAGACGTAA 416 Query 422 GGTTGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGATAATGATAATAACAACAA 481 ||| |||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 417 GGTAGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGACAATG---AT------AA 467 Query 482 CGATGGCGTTAAGGCTGGTAATTGTGTTGCTTGTGGTAGTGGATGCAAATCTAAGGCCAT 541 ||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| Sbjct 468 CGATGGCGTTAAGGCTGGTAACTGTGTGGCTTGTGGTAATGGATGCAAATCTAAGGCCAT 527 Query 542 GGCACTCACCAATTACTGTCAGCTTCATATCCTCATGGATAAAAAGCAGAAGCTTTATAC 601 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 528 GGCACTCTCCAATTACTGTCAGCTTCATATCCTCATGGATAAAAAGCAGAAGCTTTACAC 587 Query 602 GTCTTGTACTTACGTCAATAAAAGAGCTCAGTCGAAAGCAATAACTTGTCCAAAACCAAC 661 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 588 GTCTTGTACTTACGTCAACAAAAGAGCTCAGTCAAAAGCAATAACTTGTCCAAAACCAAC 647 Query 662 TCTTGCATCGACTGTTCCTGCCCTCTGTAATGTGCACTTCCAGAAAGCCCAAAAGGATGT 721 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 648 ACTTGCATCGACTGTTCCTGCTCTGTGTAATGTGCACTTCCAGAAAGCCCAAAAGGATGT 707 Query 722 TGCTCGAGCTTTGAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAGGCCTCCCCCGAA 781 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 708 TGCTCGAGCTTTAAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAAGCCTCCCCCGAA 767 Query 782 ACTCCATGACATAGTAGCTGCATTTGTGCATCATATTCAAGCAAAAAGAAAAGATCCACG 841 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 768 ACTCCATGACATAGTAGCCGCATTTGTGCATCATATTCAAGCAAAAAGAAAAGATCCACG 827 Query 842 AAAAGAGGGCAAATTGAAAAGCTTAGTAAAAGAAGAACTTACAAGCTAAATCAAACAGAG 901 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 828 AAAAGAGGGAAAATTGAAAAGCTTAGTAAAAGAAGAAATTACAAGCTAAATCAAACAG-- 885 Query 902 TGAGCAGAAGCTGTTTGTTTCCACAATTGTGCAAAAATGGAAGATTTAGCTGTGAGTGCC 961 ||||||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||| Sbjct 886 TGAGCAGGAGCTGTTTGTTACCACGATTGTGCAAAAATGGATGATTTAGCTGTGAGTGCC 945 Query 962 TTTACAAGGT---T-ACAACTTACAAGGAGCTTCAATCAAGCGAGGAGCAACATTGACAC 1017 | |||||||| | |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 946 TCTACAAGGTAACTTACAACTTACAAGGAGCTTAAATCAAGCGAGGAGCAACATTGACAC 1005 Query 1018 AATGGTTTAATTAAGCTGTTTAGCTTGAAATGAGGATATATTTGGA 1063 ||||||||| |||||| || ||| | ||||| ||||||| |||||| Sbjct 1006 AATGGTTTAGTTAAGCCGTCTAGGTCGAAATAAGGATATCTTTGGA 1051 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43879477467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5