BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05860.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470597 jgi|Araly1|470597|fgenesh2_kg.1__551__AT1G05860.1 1515 0.0
> Ahg470597 jgi|Araly1|470597|fgenesh2_kg.1__551__AT1G05860.1
Length=1051
Score = 1515 bits (820), Expect = 0.0
Identities = 988/1066 (93%), Gaps = 23/1066 (2%)
Strand=Plus/Plus
Query 6 TCGCCACTCTCTTTCTCTCTCCCTTGTTTTCCAACAGT---AACAATGGCGTCAGCTTCC 62
||||||||||| || ||||| | ||||||||||||||| ||||||||||||||||||
Sbjct 1 TCGCCACTCTC-TT-TCTCT-CGTTGTTTTCCAACAGTAACAACAATGGCGTCAGCTTCG 57
Query 63 AAGCAAAACCCTTCTTCTTCCAAACCTCCTAGGCATCCATCTCCGATCATTGCTTCAACC 122
||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || | |
Sbjct 58 AAGCAAAACCCTTCTTCATCCAAACCTCCTAGGCATCCATCTCCGATCACTGCGTCTATC 117
Query 123 CCCTCGAAATCCGGTGTAT-TGGAGGAATCCCAATTTCGAAACCCTAATAACCCGTCGAC 181
||||| ||||||||||||| | || ||||||||||||||||||||||||||||| |||||
Sbjct 118 CCCTCTAAATCCGGTGTATCT-GAAGAATCCCAATTTCGAAACCCTAATAACCCTTCGAC 176
Query 182 GTCATCGAATTCACCGATTTCGATGGCGGTGGAGGATCAGATCCTGGGAAATTCCAATCA 241
||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||
Sbjct 177 GTCGTCGAATTCACCGATTTCGATGGCTGTGGAGGATCAGATCCTGGGAAGTTCCAGCCA 236
Query 242 CCTCACTCGCCCGGAGCTTCTCCGACGCAGATCGCACAACCTGAAGCAGCTCTCTAGATG 301
| |||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||
Sbjct 237 CATCACACGCCCGGAGCTTCTCCGACGCAGATCGCATAACCTGAAACAGCTCGCTAGATG 296
Query 302 CTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCACAACATAGATATTATAG 361
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 297 TTACAGAGACCATTACTGGGCTCTAATGGAGGATCTCAAGGCGCAACACAGATATTATAG 356
Query 362 CTGGAACTATGGTGTTAGTCCTTTCAAAGATGAGAATTATCACCAAAACAAGAGACGTAA 421
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 357 CTGGAACTATGGTGTTAGTCCTTTCAAAGATGAGAATCATCAGCAAAACAAGAGACGTAA 416
Query 422 GGTTGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGATAATGATAATAACAACAA 481
||| |||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 417 GGTAGAAGGACAAACTGGGGATGAAATTGAAGGTAGCGGAGACAATG---AT------AA 467
Query 482 CGATGGCGTTAAGGCTGGTAATTGTGTTGCTTGTGGTAGTGGATGCAAATCTAAGGCCAT 541
||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||
Sbjct 468 CGATGGCGTTAAGGCTGGTAACTGTGTGGCTTGTGGTAATGGATGCAAATCTAAGGCCAT 527
Query 542 GGCACTCACCAATTACTGTCAGCTTCATATCCTCATGGATAAAAAGCAGAAGCTTTATAC 601
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 528 GGCACTCTCCAATTACTGTCAGCTTCATATCCTCATGGATAAAAAGCAGAAGCTTTACAC 587
Query 602 GTCTTGTACTTACGTCAATAAAAGAGCTCAGTCGAAAGCAATAACTTGTCCAAAACCAAC 661
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 588 GTCTTGTACTTACGTCAACAAAAGAGCTCAGTCAAAAGCAATAACTTGTCCAAAACCAAC 647
Query 662 TCTTGCATCGACTGTTCCTGCCCTCTGTAATGTGCACTTCCAGAAAGCCCAAAAGGATGT 721
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 648 ACTTGCATCGACTGTTCCTGCTCTGTGTAATGTGCACTTCCAGAAAGCCCAAAAGGATGT 707
Query 722 TGCTCGAGCTTTGAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAGGCCTCCCCCGAA 781
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 708 TGCTCGAGCTTTAAAGGATGCTGGTCATAATGTTTCTTCAGCAAGCAAGCCTCCCCCGAA 767
Query 782 ACTCCATGACATAGTAGCTGCATTTGTGCATCATATTCAAGCAAAAAGAAAAGATCCACG 841
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ACTCCATGACATAGTAGCCGCATTTGTGCATCATATTCAAGCAAAAAGAAAAGATCCACG 827
Query 842 AAAAGAGGGCAAATTGAAAAGCTTAGTAAAAGAAGAACTTACAAGCTAAATCAAACAGAG 901
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 828 AAAAGAGGGAAAATTGAAAAGCTTAGTAAAAGAAGAAATTACAAGCTAAATCAAACAG-- 885
Query 902 TGAGCAGAAGCTGTTTGTTTCCACAATTGTGCAAAAATGGAAGATTTAGCTGTGAGTGCC 961
||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||||
Sbjct 886 TGAGCAGGAGCTGTTTGTTACCACGATTGTGCAAAAATGGATGATTTAGCTGTGAGTGCC 945
Query 962 TTTACAAGGT---T-ACAACTTACAAGGAGCTTCAATCAAGCGAGGAGCAACATTGACAC 1017
| |||||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 946 TCTACAAGGTAACTTACAACTTACAAGGAGCTTAAATCAAGCGAGGAGCAACATTGACAC 1005
Query 1018 AATGGTTTAATTAAGCTGTTTAGCTTGAAATGAGGATATATTTGGA 1063
||||||||| |||||| || ||| | ||||| ||||||| ||||||
Sbjct 1006 AATGGTTTAGTTAAGCCGTCTAGGTCGAAATAAGGATATCTTTGGA 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5