BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05870.1
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470598 jgi|Araly1|470598|fgenesh2_kg.1__552__AT1G05870.2 885 0.0
Ahg482083 jgi|Araly1|482083|fgenesh2_kg.4__1143__AT2G31560.1 316 1e-85
Ahg497529 jgi|Araly1|497529|fgenesh2_kg.762__2__AT2G31560.1 311 6e-84
Ahg479783 jgi|Araly1|479783|fgenesh2_kg.3__2484__AT3G22690.1 235 4e-61
> Ahg470598 jgi|Araly1|470598|fgenesh2_kg.1__552__AT1G05870.2
Length=1153
Score = 885 bits (479), Expect = 0.0
Identities = 648/722 (90%), Gaps = 42/722 (6%)
Strand=Plus/Plus
Query 66 ATGGGTTGTGTTCGCTGCAAATCATCAGATCCATGGCAAACATCTGCCAATGCCTT---T 122
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGTTGTGCTCGCTGCAAATCATCAGATCCATGGCAAACATCTGCCAGTGCCTTGGAA 60
Query 123 GAATCCGTCGATGAATCCGGAATCAACGAAGCCTGGGTTGAGATCTCCAGCCGCAGATCA 182
||| |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 61 GAAGACGTCGATGAATCTGGAATCAACGAAGCCTGGGTTGAGATCTCTAACCGCAGATCA 120
Query 183 TTTGTCGCCGGCGAA-G--GTAGTCGGAAGAAGCTAGAGAGGAAGAAGAGCCAAGTGTTA 239
|||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TTTGTCTCCGGCGAAGGTAGTAGTCGGAAGAAGCTGGAGAGGAAGAAGAGCCAAGTGTTA 180
Query 240 CTGGAAGGTTACGTTGAGACTGCTTCTTCTTCCTCGGTGGATGATCAAAAGGACGATCTG 299
|||||||||||||||||||||| | | || |||||||||||||| |||||||||
Sbjct 181 CTGGAAGGTTACGTTGAGACTG------C-TGCT--GTGGATGATCAAAAAGACGATCTG 231
Query 300 ACGAGATCCAAGAGTTTGACGGATGACGACCTCGAAGATCTTAGAGGTTGTTTAGATCTA 359
||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 232 ACGAGATCCAAGAGTTTGACGGATGACGATCTCGAAGATCTCAAAGGTTGTTTAGATCTA 291
Query 360 GGGTTTGGTTTTAGCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAG 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GGGTTTGGTTTCAGCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAG 351
Query 420 CTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATAAGCAAAATAAATCACCGGAAACT 479
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 352 CTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATAAGCA---TAAATCACCGGAAAGT 408
Query 480 TCGTCGGTGGAAGATTGTCCGTCGCCTCCAC-TGGTCACCGCCACTCCGATTGCCAATTG 538
|||||||||||||||| |||||||||||||| || ||||| ||||||| |||||||||||
Sbjct 409 TCGTCGGTGGAAGATTCTCCGTCGCCTCCACCTG-TCACCTCCACTCCCATTGCCAATTG 467
Query 539 GAAGATCTCTAGTCCCGGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GAAGATCTCTAGTCCCGGTGATAATCCGGATGATGTGAAAGCTAGGCTCAAATACTGGGC 527
Query 599 ACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTGAATGAATCATTGTCACGTCTGAAC 658
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 528 ACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTGAATGAATCATTGTCACTTCTCAAC 587
Query 659 CAGGAATACTAGCGAATGAGCAATATCTCAAGCATTGGTAGCGGAGGAGGAGATTTCAGA 718
|| || || | || | || | | | | || | | | || |||| | | |||||
Sbjct 588 CAATAA--CT--C-AA--A-CATTGT-T-A-GC-TA--T-G-GG-GGAG-A--TCTCAGA 627
Query 719 AAGTGGCATTGGAAGGTCTAAAATTGAACTGAATATCAACAATGGTTCTCACTTAATTCC 778
||| | ||||||||||||| ||||| |||||||||||||||||| ||||||||| |||||
Sbjct 628 AAG-G-CATTGGAAGGTCTGAAATTTAACTGAATATCAACAATGATTCTCACTTGATTCC 685
Query 779 AT 780
||
Sbjct 686 AT 687
> Ahg482083 jgi|Araly1|482083|fgenesh2_kg.4__1143__AT2G31560.1
Length=1115
Score = 316 bits (171), Expect = 1e-85
Identities = 301/363 (83%), Gaps = 12/363 (3%)
Strand=Plus/Plus
Query 277 TGGATGATCAAAAGGACGATCTGACGAGATCCAAGAGTTTGACGGATGACGACCTCGAAG 336
|||||||| ||| || ||| |||||||| ||||||||||||||||||| || || || |
Sbjct 282 TGGATGAT--AAA-GATGATTTGACGAGAGCCAAGAGTTTGACGGATGATGATCTTGAGG 338
Query 337 ATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTAGCTACGACGAGATCCCTGAGCTCT 396
| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 339 AGCTTAAAGGTTGTTTAGATCTAGGGTTTGGTTTTAGTTACGACGAGATCCCTGAGCTTT 398
Query 397 GCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATA 456
| || ||||| ||||| || |||||||| || || |||||||||||||||||||| ||||
Sbjct 399 GTAATACTTTGCCTGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATA 458
Query 457 AGCAAAATAAATCACCGGAAACTTCGTCGG-TGGAAGATTG-TCCGTCGCCTCCACTGGT 514
||||| | |||||||| || | | ||| || ||||| | | || | || ||||
Sbjct 459 AGCAACA-AAATCACCACAAG-TCCC-CGGATG-AAGAT-GATTCGCCTCCACCACCAAC 513
Query 515 CACCG-CCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGGTGATAATCCGGATGATG 573
||| | || |||| ||||| |||||||||||||||||||| |||||| |||| |||||||
Sbjct 514 CAC-GACCGCTCCAATTGCAAATTGGAAGATCTCTAGTCCTGGTGATGATCCAGATGATG 572
Query 574 TGAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCT 633
| |||||||| |||||||| ||||||||| | ||||| || || || | |||||||||||
Sbjct 573 TAAAAGCTAGACTCAAATATTGGGCACAAACTGTTGCTTGCACCGTACGATTGTGCAGCT 632
Query 634 GAA 636
|||
Sbjct 633 GAA 635
> Ahg497529 jgi|Araly1|497529|fgenesh2_kg.762__2__AT2G31560.1
Length=1104
Score = 311 bits (168), Expect = 6e-84
Identities = 299/362 (83%), Gaps = 10/362 (3%)
Strand=Plus/Plus
Query 277 TGGATGATCAAAAGGACGATCTGACGAGATCCAAGAGTTTGACGGATGACGACCTCGAAG 336
|||||||| ||| || ||| |||||||| |||||||||||||||| || || || || |
Sbjct 271 TGGATGAT--AAA-GATGATTTGACGAGAGCCAAGAGTTTGACGGAAGATGATCTTGAGG 327
Query 337 ATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTAGCTACGACGAGATCCCTGAGCTCT 396
| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 328 AGCTTAAAGGTTGTTTAGATCTAGGGTTTGGTTTTAGTTACGACGAGATCCCTGAGCTTT 387
Query 397 GCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAATGAGCCAGAAGTTCTTAGACGATA 456
| || ||||| ||||| || |||||||| || || |||||||||||||||||||| ||||
Sbjct 388 GTAATACTTTGCCTGCGTTAGAGCTTTGTTACTCCATGAGCCAGAAGTTCTTAGATGATA 447
Query 457 AGCAAAATAAATCACCGGAAACTTCGTCGG-TGGAAGATTG-TCCGTCGCCTCCACTGGT 514
||||| | |||||||| || | | ||| || ||||| | | || | || |||| |
Sbjct 448 AGCAACA-AAATCACCACAAG-TCCC-CGGATG-AAGAT-GATTCGCCTCCACCACCGAA 502
Query 515 CACCGCCACTCCGATTGCCAATTGGAAGATCTCTAGTCCCGGTGATAATCCGGATGATGT 574
|||| || ||| ||||| ||||||||||| |||||||| |||||| |||| ||||||||
Sbjct 503 CACCACCGTTCCAATTGCAAATTGGAAGATATCTAGTCCTGGTGATGATCCAGATGATGT 562
Query 575 GAAAGCTAGGCTCAAATACTGGGCACAAGCCGTTGCCTGTACTGTCCAATTGTGCAGCTG 634
|||||||| |||||||| ||||||||| | ||||| || || || | ||||||||||||
Sbjct 563 AAAAGCTAGACTCAAATATTGGGCACAAACTGTTGCTTGCACCGTACGATTGTGCAGCTG 622
Query 635 AA 636
||
Sbjct 623 AA 624
> Ahg479783 jgi|Araly1|479783|fgenesh2_kg.3__2484__AT3G22690.1
Length=2712
Score = 235 bits (127), Expect = 4e-61
Identities = 141/148 (95%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 313 GTTTGACGGATGACGACCTCGAAGATCTTAGAGGTTGTTTAGATCTAGGGTTTGGTTTTA 372
|||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||| |
Sbjct 2522 GTTTGACGGATGACGATCTCGAAGATCTCAAAGGTTGTTTAGATCTAGGCTTTGGTTTCA 2581
Query 373 GCTACGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTGGAGCTTTGCTATTCAA 432
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2582 GCTATGACGAGATCCCTGAGCTCTGCAACACTTTACCTGCTTTAGAGCTTTGCTATTCAA 2641
Query 433 TGAGCCAGAAGTTCTTAGACGATAAGCA 460
||||||||||||||||||||||||||||
Sbjct 2642 TGAGCCAGAAGTTCTTAGACGATAAGCA 2669
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 528 ATTGCCAATTGGAAGATCTCTAGTCCCG 555
||||||||||||||||||||||||||||
Sbjct 2685 ATTGCCAATTGGAAGATCTCTAGTCCCG 2712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32518848201
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5