BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05880.2
Length=1726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470600 jgi|Araly1|470600|fgenesh2_kg.1__554__AT1G05880.1 2122 0.0
> Ahg470600 jgi|Araly1|470600|fgenesh2_kg.1__554__AT1G05880.1
Length=1588
Score = 2122 bits (1149), Expect = 0.0
Identities = 1367/1472 (93%), Gaps = 16/1472 (1%)
Strand=Plus/Plus
Query 36 ATCGGAGGTGGATGCGGAGGCGGATGAGTCGTATGTCAACGCAGCTTTAGAAGATGGTCA 95
|||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 50 ATCGGAGGCCGAGGCGGAGGCGTATGAGTCGTATGTCAACGCAGCTTTAGAAGATGGTCA 109
Query 96 GACCGGaaaaaaaTCTGTCCAGCGGAATTATGCAACTGTTCTGACAGAGGAAGATATTCG 155
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 110 GACCACAAAAAAATCTGTCCAACGGAATTATGCAACTGTTCTGACAGAGGAAGATATTCG 169
Query 156 AGCGCTTATGGAAATTGACGTTCAAAGTGTTTCAGATTTTACTTCCCTCTCCAAAGCTGA 215
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 170 AGCGCTTATGGAAATTGACATTCGAAGTGTTTCAGATCTTACTTCCCTCTCCAAAGCTGA 229
Query 216 AGCCACACTTCTGCTTTCTCACTTAAGATGGAATGTTGATTGTATA-T-GTAAACAATGG 273
|||||||||||||||||||||||| |||||| ||||||| || ||| | || ||||||||
Sbjct 230 AGCCACACTTCTGCTTTCTCACTTGAGATGGGATGTTGA-TG-ATATTCGTGAACAATGG 287
Query 274 TCTGCTGGTGCTCAAAGTGTTAGAGACAGCGTCGGCTTATTGGAGCTTGATCCACCTTCT 333
|||||||||||||| | ||||||||| ||||| |||||||| || |||||||||||||||
Sbjct 288 TCTGCTGGTGCTCAGATTGTTAGAGAAAGCGTGGGCTTATTAGAACTTGATCCACCTTCT 347
Query 334 GATGACAACGAATATTTTTGCGGAGCCTGTGGCGAATCACACCCACATAAGAACTTGGCA 393
||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 348 GATGACAACGAGTATTTTTGCGGAGCCTGTGGCAAATCAAACCCACATAAGAACTTCGCA 407
Query 394 TCGGTCTCTTGTGGTCATCGTATATGCACTCGCTGCTGGACAAGCCATATCAACAAAATC 453
|||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 408 TCGGTCTCTTGTGGCCATCGTATATGCACTCGCTGCTGGAAAAGCCACATCAACAAAATC 467
Query 454 ATCAGTGAAAAGCCAGCTGCTGAATGGAATCTTTGGCTGAAATGTCCTGTTCGTGTTGGT 513
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 468 ATCAGTGAAAAGCCATCTGCTGAATGGAATCTTTGGCTGAAATGCCCTGTTCGTGTTGGT 527
Query 514 CTCCACGCTTCTTGTCCAGCTTCTGTTGGTCTAGATACGATTGA-GAGATTTGCTTCCAA 572
||||||||||||||||||||||||||||||| ||||| |||||| || |||||||||| |
Sbjct 528 CTCCACGCTTCTTGTCCAGCTTCTGTTGGTCGAGATATGATTGAGGA-ATTTGCTTCC-A 585
Query 573 GAG-AGAGAAGTTCAATTACAATCAATATCTCCTTAGATCTTACGTTGACAACAGAGAAA 631
| | |||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 586 GGGAAGAGAAGTTCAATTACAATCAATATCTCCTTAGAACTTACGTTGAGAACAGAGAGA 645
Query 632 CAATGAAATGGCATCCTATCCAGGGGTCTAGATGCGCCATTGATCTTAGTCCAGGTTCTG 691
| ||||||||||||||||||| ||||||||||||||| |||||||||||||| | |||||
Sbjct 646 CGATGAAATGGCATCCTATCCGGGGGTCTAGATGCGCGATTGATCTTAGTCCTGATTCTG 705
Query 692 GAAATGCCAGTGTCTCCTGTCACCGTTTGGTTAGATTCTGTTGGAATTGCAGAGAAGACG 751
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 706 GAAATGCCAGTGTCTCCTGTCTCCGTTTGGTTAGATTCTGTTGGAATTGCAGAGAGGATG 765
Query 752 CTCACAGTCCTGTGGACTGTAAAACTGCTGCAAAATGGCTACTAGAAAATGCGGTGCCTT 811
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 CTCACAGCCCTGTGGACTGTAAAACTGCTGCAAAATGGCTACTAGAAAATGCGGTGCCTT 825
Query 812 GTCCCAAGTGTAAGCTAAGGATCCCACGAAATCAAGATAATTCACTGAAGATGAAATGCT 871
|||||| ||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GTCCCACGTGTATGCAAAGTATCCCACGAAATCAAGATAATTCACTGAAGATGAAATGCT 885
Query 872 TACCTTGTAACTATGTTTTCTGTTGGTTCTGCCATGTCGACTGGATTGAAGACATGGAAG 931
||||||||||||| | |||||||||| ||||| | |||||||||||||| || ||||||
Sbjct 886 TACCTTGTAACTACGAATTCTGTTGGTACTGCCGTCTCGACTGGATTGAACACCTGGAAG 945
Query 932 GAACTGGTGGTGATT--TACACTTTTGTACCTTCGATGCTGTCTTGAGTGATCAACGTGG 989
||||||||||||||| ||||| ||||| |||| ||||||||| |||||||||| ||||
Sbjct 946 GAACTGGTGGTGATTCATACAC--TTGTAACTTCAATGCTGTCTCGAGTGATCAAAGTGG 1003
Query 990 GAAAATGTCAGAATCTGATTCAAATAGATACGAAGATTGTTATGAAAATTGGGA-CAGTA 1048
| ||||||||||||||||| |||||||||||| |||||| |||||| ||| ||| |||||
Sbjct 1004 GGAAATGTCAGAATCTGATCCAAATAGATACGGAGATTGCTATGAAGATT-GGAGCAGTA 1062
Query 1049 ATGAATTGTTGATGCAAAAGGAACAAGCAAACCTGCCAAAACTAGATACTATTATTCAGG 1108
||||||||||||||||||| | | |||||||||||||||||||||||||| |||| |||
Sbjct 1063 ATGAATTGTTGATGCAAAAAGCAGAAGCAAACCTGCCAAAACTAGATACTGCTATTAAGG 1122
Query 1109 AACTAAGTAACACACAGTTAGAAAACGTATCGCAGCTTAAGTTCATCCTAGAAGCTGGAC 1168
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1123 ATCTAAGTAACACACAGTTAGAAAACGTATCACAGCTTAAGTTCATCCTAGAAGCTGGGC 1182
Query 1169 TTCAGATCATAGAATGTAGAAGGGTCCTGGAATGGACTTATGTTTATGGATATTACCTTA 1228
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1183 TTCAGATCATAGAATGTCTAAGGGTCCTGAAATGGACTTATGTTTATGGATATTACCTTC 1242
Query 1229 GAGAGGATGAGGTCGGGAAGCAAAATTTATTGAAGGATACGCAAGAGAGGTTGAAGAAGT 1288
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1243 GAGAGGATGAGGTCGGGAAGCAAAATTTATTGAAGGATACGCAAGAGAGGTTGAAGAATT 1302
Query 1289 TTGTGGAAAATCTCAAA-CACTGTTTGGAGACTAATCTGCAGCCGTTTCGTTACGAGGAG 1347
||||||| ||||| ||| |||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1303 TTGTGGAGAATCT-AAATCACTGTTTGGTGACTAATCTGGAGCCGTTTCGTTACGAGGAG 1361
Query 1348 GAACCGTCAAAGGATTTCAATGCCTTCCGCATCAAGTTAACCGAACTAACTAGCCTAACG 1407
||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1362 GAACCATCAAAGGATTTCAAAGCCTTCCGCATCAAGTTAACTGAACTAACTAGCCTAACG 1421
Query 1408 CGGAACCACTATGAGAATGTGGTAAAAGATGTAGAGAATGGCTTAGCTAGTGTTGTCTCT 1467
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1422 CGGAACCACTATGAGAATGTGGTAAAAGATATAGAGAATGGCTTAGCTAGCGTTGTCTCT 1481
Query 1468 GAGGGGGAAGCAAGTGGTTCAGGCCGTAATCA 1499
|| |||||||| |||||||| |||||||||||
Sbjct 1482 GAAGGGGAAGCTAGTGGTTCGGGCCGTAATCA 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64753416500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5