BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05890.2
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470601 jgi|Araly1|470601|fgenesh2_kg.1__555__AT1G05890.1 2861 0.0
Ahg933699 jgi|Araly1|933699|scaffold_401687.1 1365 0.0
Ahg320921 jgi|Araly1|320921|fgenesh1_pm.C_scaffold_4000978 385 1e-105
> Ahg470601 jgi|Araly1|470601|fgenesh2_kg.1__555__AT1G05890.1
Length=2143
Score = 2861 bits (1549), Expect = 0.0
Identities = 1695/1766 (96%), Gaps = 7/1766 (0%)
Strand=Plus/Plus
Query 661 AATTATGTTGTTCTCAAGGAAGAAGATATTCGCAGGCATCAGAACGATGATGTTGGGCGA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 AATTATGTTGTTCTCAAGGAAGAAGATATTCGCAGGCATCAGAACGATGATGTTGGGCGA 395
Query 721 GTTTCCGCGGTCCTCTCCATAACCGATGTCGAAGCAAGTACTTTGCTTCTTCACTATCAC 780
||||||| ||||||||||||||| |||||||||||||| | ||||||||| |||||||||
Sbjct 396 GTTTCCGTGGTCCTCTCCATAACTGATGTCGAAGCAAGCATTTTGCTTCTCCACTATCAC 455
Query 781 T-GGAGTGTCAGTAAAGTTAATGATGAATGGTTTGCGGATGAGGAGAGAGTTCGCAGAAC 839
| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 456 TGGGA-TGTTAGTAAAGTTCATGATGAATGGTTTGCGGATGAGGAGAGAGTTCGGAGAAC 514
Query 840 TGTTGGCATATTAGAGGGACCTGTTGTTACAACACCTGATGGCAGAGAATTTACATGTGG 899
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 515 TGTTGGCATATTAGAGGGACCTGTTGTTCCAACACCTGATGGCAGAGAACTTACATGTGG 574
Query 900 AATATGCTTTGATTCCTACACTCTTGAGGAAATTGTATCGGTTTCTTGTGGTCATCCTTT 959
|||||||||||| |||||| |||||||||| |||||||||| ||||||||||||||||||
Sbjct 575 AATATGCTTTGAATCCTACCCTCTTGAGGATATTGTATCGGCTTCTTGTGGTCATCCTTT 634
Query 960 CTGCGCTACATGTTGGACAGGTTATATAAGCACAACCATCAATGATGGCCCAGGCTGTTT 1019
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 635 CTGCACTACATGTTGGACGGGTTATATAAGCACAACCATCAATGATGGCCCAGGATGTTT 694
Query 1020 GATGCTAAAATGTCCCGACCCTTCTTGTCCTGCTGCTATTGGTCGAGATATGATCGATAA 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GATGCTAAAATGTCCTGACCCTTCTTGTCCTGCTGCTATTGGTCGAGATATGATCGATAA 754
Query 1080 GTTGGCTTCTAAGGAAGACAAGGAGAAGTATTATAGATATTTTCTTAGATCTTATGTCGA 1139
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 755 ATTGGCTTGTAAGGAAGACAAGGAGAAGTATTATAGATATTTTCTTAGATCTTATGTTGA 814
Query 1140 AGTCAACAGAGAGATGAAGTGGTGTCCTGCCCCAGGATGTGAACATGCAATTGATTTTGC 1199
|| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 815 AGACAACAGAAAGATGAAGTGGTGTCCTGCCCCAGGATGTGAGCATGCAATTGATTTTGC 874
Query 1200 TGGTGGGACCGAAAGTTATGATGTTTCGTGCTTGTGTTCGCATAGCTTTTGCTGGAATTG 1259
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TGCTGGGACTGAAAGTTATGATGTTTCGTGCTTGTGTTCGCATAGCTTTTGCTGGAATTG 934
Query 1260 CACTGAAGAGGCTCACCGTCCTGTGGATTGTGACACAGTTGGAAAATGGATACTAAAGAA 1319
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 935 CACTGAAGAGGCTCACCGTCCTGTGGATTGTGACACAGTTGGGAAATGGATACTAAAGAA 994
Query 1320 CAGCGCTGAATCTGAAAATATGAATTGGATACTTGCCAATTCAAAGCCTTGTCCAAAGTG 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 995 CAGCGCTGAATCTGAAAATATGAATTGGATACTTGCCAATTCAAAGCCTTGTCCAAGGTG 1054
Query 1380 TAAGCGGCCAATTGAAAAGAATCATGGCTGTATGCACATGACATGCACACCACCTTGTAA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TAAGCGGCCAATTGAAAAGAATCATGGCTGTATGCACATGACATGCACACCACCTTGTAA 1114
Query 1440 ATTTGAGTTTTGTTGGCTTTGCCTTAACGCATGGACAGAACACGGGGAAAGAACTGGTGG 1499
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 ACATGAGTTTTGTTGGCTTTGCCTTAACGCATGGACAGAACACGGGGAAAGAACTGGTGG 1174
Query 1500 ATTTTATGCCTGCAACCGGTATGAGGCGGCTAAGCAAGAAGGGTTGTATGATGAGGCTGA 1559
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1175 ATTTTATGCCTGCAACCGGTATGAGGCGGCTAAGAAAGAAGGGTTGTATGATGAGGCTGA 1234
Query 1560 AAGGAGGCGAGAGATGGCAAAAAATTCGCTAGAGAGATACACTCATTACTATGAACGCTG 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 AAGGAGGCGAGAGATGGCAAAAAATTCGCTAGAGAGATACACTCATTACTATGAACGCTG 1294
Query 1620 GGCAAGCAATCAAGTGTCGAGGCAAAAAGCTATGGGGGATCTGCAGAAAATGCAATCAGA 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 GGCAAGCAATCAAGTGTCGAGGCAAAAAGCTATGGGGGATCTGCAGAAAATGCAATCAGA 1354
Query 1680 GAAGCTTGGGAAGCTTAGTGACATTCAGTGCACACCAGAATCTCAGCTCAAGTTTATCGC 1739
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1355 GAAGCTTGGGAAGCTTAGTGACATACAGTGCACACCAGAATCTCAGCTCAAGTTTATCGC 1414
Query 1740 AGAGGCTTGGCTCCAGATCATTGAATGCAGACGGGTACTGAAATGGACATATGCATATGG 1799
| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1415 ACAAGCTTGGCTCCAGATCATTGAATGCAGACGGGTACTTAAATGGACATATGCATATGG 1474
Query 1800 ATACTATCTACAAGATCATGCTAAGAAACCATTTTTTGAGTATTTGCAAGGGGAGGCTGA 1859
||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1475 ATACTATCTACCAGATCATGCTAAGCGACAATTTTTTGAGTATTTGCAAGGGGAGGCTGA 1534
Query 1860 GTCAGGTTTGGAGAGGCTCCACAAATGCGTAGAGAAGGATATAGAGGTGTTTGAACTTGC 1919
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 1535 GTCAGGTTTGGAGAGGCTCCACAAATGCGTAGAGAAGGATTTAGAGGTGTTTCAAATTGC 1594
Query 1920 TGAGGGCCCTTCAGAGGAATTCAATCATTTCCGGACAAAATTAACTGGTTTAACCAGCAT 1979
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 TGACGGCCCTTCAGATGAATTCAATCATTTCCGGACAAAATTAACTGGTTTAACCAGCAT 1654
Query 1980 AACAAAAACCTTCTTTGAAAATCTGGTGAAAGCTCTGGAGAATGGTCTTGCTGATGTGGA 2039
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 AACAAAAACCTACTTCGAAAATCTGGTGAAAGCTCTGGAGAATGGTCTTGCTGATGTGGA 1714
Query 2040 T-TCACAAGCTGCTAGCAGCAAACCAGCTAACTCTAAACCTTCTAGCAAGACAAAAGGCG 2098
| | |||||||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 1715 TAT-ACAAGCTGCTAGCAGCAAACCAGCAAACTCTAAATCGTCTAGCAAGACAAAAGGCG 1773
Query 2099 GTGGGAAAGGTAAAGGAAGCTCCAAAAATGGCGGGTCCAGCAGAAACCCAGATGGCAATT 2158
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1774 GTGGGAAAGGTAAAGGAAGCTCCAAAAATGGCGGGTCCAGCAGAAACCCAGATGACAATT 1833
Query 2159 GAGATCTCTCAGGTTTCAGTTACATCACTCAGTCTCTCTCACAAAGGTCTAGATTACTCA 2218
||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||
Sbjct 1834 GAGATCTCTCAGGTTTCAGTTGCATCACTCAGTCTCTCCCACAAAGGTCGAGATTACTCG 1893
Query 2219 GGAAGAAGAA-A--GACTTTTTAAGAGTTCAGCAAATTGGAGAAAGGTTTGGGGTTTAGA 2275
|||||||||| | || ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1894 GGAAGAAGAAGAAAGAATTTTTAAGAGTTCAGCAAATTGGAGGAAGGTTTGGGGTTTACA 1953
Query 2276 ATACTTTTGACTACACTCCTGTGAGTTTGAAGGCTGTTAAGGCACAAGACTGCACACACA 2335
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1954 ATACTTTTGAGTACACTCCTGTGAGTTTGAAGGCTGTTAAGGCACAAGACTGCACGCACA 2013
Query 2336 AGTTAACTATCTCTCTCTGTCTTAAGGGTTCATGATAGTCTTTGCTTACCCTAAATATTG 2395
||| ||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||
Sbjct 2014 AGTGAACTATCTCTCTCTGTCTTAAGGTTTCATGTTAGTCTTTGGTTACCCTAAATATTG 2073
Query 2396 TATAGTATTAAAGAATCTGCACATTG 2421
|||||||| |||||||||||||||||
Sbjct 2074 TATAGTATAAAAGAATCTGCACATTG 2099
Score = 261 bits (141), Expect = 2e-68
Identities = 218/252 (87%), Gaps = 17/252 (7%)
Strand=Plus/Plus
Query 293 CCCCCAAACCCTACTTTGTCCAGCGAGAAAGGAAGAGGGGTTTCGTCTGATTCCGCTAAA 352
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 79 CCCCCAAACCCTACTTTGTCCAGCGAGAAAAGAAGAGGGCTTTCGTCTGATTCCGCTAAA 138
Query 353 TCTCTAGTCTTTATCTAAAGATCATGGATTCCGATGATGATATGC---A--C----GATA 403
|||||||||||||| |||||||||||||||||||||||||||||| | | ||||
Sbjct 139 TCTCTAGTCTTTATTTAAAGATCATGGATTCCGATGATGATATGCTCGATGCCCACGATA 198
Query 404 TGGACT-CGGTAGATTATGATTATTACAGCGGCGGCACCTATGATGACAACGATAGTGAT 462
|||| | ||| |||| |||||| |||||||||||||||| | ||| || |||||||||||
Sbjct 199 TGGAATACGG-AGATGATGATTTTTACAGCGGCGGCACCGACGATTACGACGATAGTGAT 257
Query 463 GA-----AA-CTGATTTCGGGTTTGGTGAGGCTGACACCGACGATGCCGCCATCATCGCC 516
|| || |||||| ||||||||||||||| ||| |||| ||| ||||||| ||||||
Sbjct 258 GATGTTGAAACTGATTACGGGTTTGGTGAGGCAGACGCCGATGATTCCGCCATTATCGCC 317
Query 517 TCCTATCGCTCT 528
||| ||||||||
Sbjct 318 TCCCATCGCTCT 329
> Ahg933699 jgi|Araly1|933699|scaffold_401687.1
Length=1726
Score = 1365 bits (739), Expect = 0.0
Identities = 1265/1513 (84%), Gaps = 59/1513 (4%)
Strand=Plus/Plus
Query 678 GGAAGAAGATATTCGCAGGCATCAGAACGATGATGTTGGGCGAGTTTCCGCGGTCCTCTC 737
||||||||||||||||||||| |||| |||||| ||| |||||||||| ||||||||
Sbjct 212 GGAAGAAGATATTCGCAGGCACCAGATGGATGATATTGAACGAGTTTCCGTTGTCCTCTC 271
Query 738 CATAACCGATGTCGAAGCAAGTACTT-TGCTTCTTCACTATCACTGGAGTGTCAGTAAAG 796
||||| || |||||||| |||| || |||||| ||| | ||||||||||||| ||| ||
Sbjct 272 GATAACTGAGGTCGAAGCGAGTA-TTCTGCTTCGTCATTTTCACTGGAGTGTCGGTAGAG 330
Query 797 TTAATGATGAATGGTTTGCGGATGAGGAGAGAGTTC-GCAGAACTGTTGGCATATTAGAG 855
|| ||||||| |||||||| ||||| |||||||||| | || |||||||||||||| |||
Sbjct 331 TTCATGATGAGTGGTTTGCTGATGAAGAGAGAGTTCGGAAG-ACTGTTGGCATATTGGAG 389
Query 856 GGACCTGTTGTTACAACACCTGATGGCAGAGAATTTACATGTGGAATATGCTTT-GATTC 914
| ||||||||| || || |||||| ||| ||| ||||||||||||| || ||| |||||
Sbjct 390 AGTCCTGTTGTTCCACCATCTGATGACAGTGAACTTACATGTGGAATCTG-TTTCGATTC 448
Query 915 CTACACTCTTGAGGAAATTG-TATCGGTTTCTTGTGGTCATCCTTTCTGCGCTACATGTT 973
||| ||| |||| |||| | | || ||||||||||| |||||||||||| ||||||| |
Sbjct 449 GTACCCTCCTGAGAAAATCGCT-TCAGTTTCTTGTGGCCATCCTTTCTGCACTACATGCT 507
Query 974 GGACAGGTTATATAAGCACAACCATCAATGATGGCCCAGGCTGTTTGATGCTAAAATGTC 1033
||||||||||||| | ||||||||| |||||||| || || ||||||||||||| |||||
Sbjct 508 GGACAGGTTATATCACCACAACCATTAATGATGGTCCGGGATGTTTGATGCTAAGATGTC 567
Query 1034 CCGACCCTTCTTGTCCTGCTGCTATTGGTCGA-GATATGATCGATAAGTTGGCTTCTAAG 1092
| || || ||||||| ||||||| |||||| | |||||| | || || || || |||
Sbjct 568 CTGATCCATCTTGTCTTGCTGCTGTTGGTC-ATGATATGGTTGACAAATTAGCGTCT--- 623
Query 1093 GAAGACAAGGAGAAGTATTATAGATATTTTCTTAGATCTTATGTCGAAGTCAACAGAGAG 1152
||||| ||||||||||| | |||||||||||||| |||||| | |||| ||||||| ||
Sbjct 624 GAAGAGAAGGAGAAGTACAACAGATATTTTCTTAGGTCTTATATTGAAGACAACAGAAAG 683
Query 1153 ATGAAGTGGTGTCCTGCCCCAGGATGTGAACATGCAATTGATTTTGCTGGTGGGAC-CGA 1211
|||||||||||||||||||| |||||||| |||| |||||||||| || ||| | ||
Sbjct 684 ATGAAGTGGTGTCCTGCCCCGGGATGTGATTATGCGATTGATTTTGTTGCAGGGTCTGGA 743
Query 1212 AAGTTATGATGTTTCGTGCTTGTGTTCGCATAGCTTTTGCTGGAATTGCACTGAAGAGGC 1271
|| |||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 744 AA-TTATGATGTTTCCTGCTTGTGCTCGTTTAGCTTTTGCTGGAATTGCACTGAGGAGGC 802
Query 1272 TCACCGTCCTGTGGATTGTGA-CACAGTTGGAAAATGGATACTAAAGAACAGCGCTGAAT 1330
|||||| |||||||||||| | ||||||| ||||||||| | ||||||||||||||||
Sbjct 803 TCACCGACCTGTGGATTGT-AGCACAGTTTCAAAATGGATTTTGAAGAACAGCGCTGAAT 861
Query 1331 CTGAAAATATGAATTGGATACTTGCCAATTCAAAGCCTTGTCCAA-AGTGTAAGCGGCCA 1389
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 862 CTGAAAATATGAATTGGATACTTGCCAATTCAAAGCCTTGTCCAAGA-TGTAAGCGGCCA 920
Query 1390 ATTGAAAAGAATCATGGCTGTATGCACATGACATGCACACCACCTTGTAAATTTGAGTTT 1449
|||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 921 ATTGAAAAGAATCAGGGCTGTATGCACATGACATGCACACCGCCTTGTAAATATGAATTT 980
Query 1450 TGTTGGCTTTGCCTTAACGCATGGACAGAACACGGGGAAAGAACTGGTGGATTTTATGCC 1509
|||||||| || ||| ||||||| || || ||||||||||||||||| ||||||||
Sbjct 981 TGTTGGCTATGTCTTGGTGCATGGATGGATCATGGGGAAAGAACTGGTGGTTTTTATGCT 1040
Query 1510 TGCAACCGGTATGAGGCGGCTAAGCAAGAAGGGTTGTATGATGAGGCTGAAAGGAGGCGA 1569
|| |||||||| |||| ||| ||||||||||| |||||||||| | ||||||||| ||
Sbjct 1041 TGTAACCGGTACGAGGTGGCCAAGCAAGAAGGACAGTATGATGAGACAGAAAGGAGGAGA 1100
Query 1570 GAGATGGCAAAAAATTCGCTAGAGAGATACACTCATTACTATGAACGCTGGGCAAGCAAT 1629
|||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1101 GAGATGGCCAAAAATTCACTAGAGAGATACACACATTATTATGAACGCTGGGCAAGCAAT 1160
Query 1630 CAAGTGTCGAGGCAAAAAGCTATGGGGGATCTGCAGAAAATGCA-ATCAG-AGAAGCTTG 1687
||| |||||||||||| ||||||| ||||||||| || ||| | | | |||| ||||
Sbjct 1161 CAAACGTCGAGGCAAAAGGCTATGGCAGATCTGCAGCAAGCGCAGA-C-GCAGAATCTTG 1218
Query 1688 GGAAGCTTAGTGACATTCAGTGCACACCAGAATCTCAGCTCAAGTTTATCGCAGAGGCTT 1747
|||||||||||| | |||||||||||||||||||||||||| || || ||| ||||
Sbjct 1219 AGAAGCTTAGTGATAAACAGTGCACACCAGAATCTCAGCTCAAATTCATTTTAGAAGCTT 1278
Query 1748 GGCTCCAGATCATTGAATGCAGACGGGTACT-GAAATGGACATATGCATATGGATACTAT 1806
|||| |||||||| ||||| || || || || ||||||||| |||||||||||||||||
Sbjct 1279 GGCTTCAGATCATCGAATGTAGGCGAGT-CTTGAAATGGACTTATGCATATGGATACTAC 1337
Query 1807 CTACAAGATCATGCTA-A-G--AAAC--CATTTTTT-GAGTATTTGCAAGGGGAGGCTGA 1859
|||| ||||||| | | | |||| || ||||| ||||||||||||||||| |||||
Sbjct 1338 CTACCTGATCATGA-ACATGCCAAACGACAATTTTTCGAGTATTTGCAAGGGGAAGCTGA 1396
Query 1860 GTCAGGTTTGGAGAGGCTCCA-CAAATGCGTAGAGAAGGA-TATAGAGGT--GTTTG--A 1913
||||||||| ||||||||||| ||| |||||||||||||| | | | | | |||| |
Sbjct 1397 GTCAGGTTTAGAGAGGCTCCATCAA-TGCGTAGAGAAGGACT-T-G-GCTCAGTTTCTCA 1452
Query 1914 ACTTGCTGAGGGCCCTTCAGAGGAATTCAATCATTTCCGGACAAAATTAACTGGTTTAAC 1973
| | || || ||||| ||| | || |||||| |||||||||||||| || ||||||| ||
Sbjct 1453 A-T-GCAGAAGGCCCATCAAAAGATTTCAATGATTTCCGGACAAAACTAGCTGGTTTGAC 1510
Query 1974 CAGCATAAC-AAAAACCTTCTTTGAAAATCTGGTGAAAGCTCTGGAGAATGGTCTTGCTG 2032
|||| | || |||||| | |||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 1511 CAGCGTGACGAAAAAC-TACTTTGAGAATTTGGTGAAAGCTCTGGAGAACGGTCTTGCTG 1569
Query 2033 ATGTGGATTCACAAGCTGCT---AGCAGCAAACCAGCTAA-CTCTAAA-C--CTTCTAGC 2085
|||| || ||||| || ||| ||||||||| || | || ||| ||| | | || ||
Sbjct 1570 ATGTAGACTCACATGCGGCTTGCAGCAGCAAATCAAC-AAGCTCCAAATCAACAGCTTGC 1628
Query 2086 A--AGACAAAAGGCGGTGGGAAAGGTAAAGGAAGCTCCAAAAATGGCGGGTCCAGCAGAA 2143
| || ||||| | || ||||| |||||||| |||| || ||| || ||||||||||
Sbjct 1629 AGTAG-CAAAACAAGA-GGTAAAGGCAAAGGAAGTTCCAGAACTGGTGGATCCAGCAGAA 1686
Query 2144 ACCCAGATGGCAA 2156
||||||||| |||
Sbjct 1687 ACCCAGATGACAA 1699
> Ahg320921 jgi|Araly1|320921|fgenesh1_pm.C_scaffold_4000978
Length=1587
Score = 385 bits (208), Expect = 1e-105
Identities = 648/850 (76%), Gaps = 71/850 (8%)
Strand=Plus/Plus
Query 663 TTATGTTGTTCTCAAGGAAGAAGATATTCGCAGGCATCAGAA-CGATGATGTTGGGCGAG 721
||| || ||||||||||||||||| |||| || |||||| || || ||| | | ||||
Sbjct 132 TTACGTAGTTCTCAAGGAAGAAGACATTCACAAGCATCA-AAGAGACGATATCGAACGAG 190
Query 722 TTTCCGCGGTC-CTCTC-CATAA-CCGATGTCGAAGC-A-AGTACTTTGCTTCTTCACTA 776
||||| ||| | ||||| | ||| || | |||||||| | || | || |||||||| ||
Sbjct 191 TTTCCACGG-CTCTCTCTC-TAAGCC-AAGTCGAAGCGACCGTTC-TT-CTTCTTCATTA 245
Query 777 TCACTGGAGTGTCAGTAAAG-T-TAATGATGAATGGTTTGCGGATGAGGAGAGAGTTCGC 834
||| |||||||| ||| ||| | | | || ||||||||| |||| || |||||| | ||
Sbjct 246 TCATTGGAGTGTTAGT-AAGATCT-ACGAGGAATGGTTTACGGACGAAGAGAGAATCCGT 303
Query 835 AGAACTGTTGGCATATTAGAGGGA-CCTGTTGTTACAACACCTGATGGCAGAGAA-T--- 889
| ||| ||||| || | || ||| ||||| ||| || | |||| |||||| |
Sbjct 304 AAAACAGTTGGAATCCT-GAAGGAGCCTGTCGTT--GAC-GTTAATGGTAGAGAAGTGGA 359
Query 890 T-TAC-ATGTGGAATATGCTTTGATTCCTACAC-TCTTGAGGAAATTG-TATCGGTTTCT 945
| | | ||||||||| |||||||| || ||||| || || ||||||| || ||||||||
Sbjct 360 TATCCAATGTGGAATTTGCTTTGAATCATACACTTC-AGATGAAATTGCTA-CGGTTTCT 417
Query 946 TGTGGTCATCCTT-TCTGCGCTACATGTTGGACAGGTTATATAAGC-ACAACCATCAATG 1003
||||||||||||| | ||| || || ||||| ||||| || | ||||| |||||
Sbjct 418 TGTGGTCATCCTTAT-TGCAAGACTTGCTGGACTGGTTACAT-CTCTACAACAATCAACA 475
Query 1004 ATGGCCCAGGCTGTTTGATGCTAAAATGTCCCGACCCTTCTTG-TCCTGCTGCTATTGGT 1062
| || ||||| ||||| | | | |||||||| || |||||||| ||| ||||| |||||
Sbjct 476 ACGGTCCAGGATGTTTAAGGGTTAAATGTCCTGAGCCTTCTTGTTCC-GCTGCGGTTGGT 534
Query 1063 CGAGATATGATCGATAA-GTTGGCTTCTAAGGAAGACAAGGAGAAGTATTATAGATATTT 1121
| ||||||||||||||| ||| | | ||| ||||| ||||||||||| |||||||||||
Sbjct 535 CAAGATATGATCGATAAGGTTAG-TAATAAAGAAGATAAGGAGAAGTACTATAGATATTT 593
Query 1122 TCTTAGATCTTATGT---CGAAG-TCAACAGAGAGA-TGAAGTGGTGTCC-TGCCCCAGG 1175
|||||| |||||||| |||| | ||||| | | || |||||||| | | || ||
Sbjct 594 TCTTAGGTCTTATGTGGAAGAAGTTGGGGAGAGA-ACT-AAATGGTGTCCAT-CACCGGG 650
Query 1176 ATGTGAACATGCAATTGA-TTT--TGCT--G-GTGGGA-CCG-A--A--AGTTATGATGT 1223
||| ||| ||| || || ||| || | | |||| | | | | ||||||||| |
Sbjct 651 ATGCGAATGTGCGATAGATTTTAGTGTTGGGAGTGGAAGTGGAAGTAGTAGTTATGATAT 710
Query 1224 TTCGTGCTTGTGTTCGCATAGCTTTTGCTGGAATTGCACTGAAGAGGCTCACCGTCCTGT 1283
|| || ||||||||||||||||||||||||||||| |||||||| |||||| |||||||
Sbjct 711 TTATTGTTTGTGTTCGCATAGCTTTTGCTGGAATTGTACTGAAGATGCTCACAGTCCTGT 770
Query 1284 GGATTGTGACACAGT-TGGAAAATGGATACTAAAGAAC-AGCGCTGAATCTGAAAATATG 1341
|||||||||||| || | |||||||||| | |||||| || | ||| || || || | |
Sbjct 771 GGATTGTGACACGGTCTC-AAAATGGATATTCAAGAACCAG-GATGAGTCCGAGAACAAG 828
Query 1342 AATTGGATACTTGCCAATTCAAAGCCTTGTCC-AAAGTGTAAGCGGCCAATTGAAAAGAA 1400
|||||||| ||||| ||||||||||||||||| ||| || || || || || || |||||
Sbjct 829 AATTGGATGCTTGCGAATTCAAAGCCTTGTCCTAAA-TGCAAACGTCCTATCGAGAAGAA 887
Query 1401 TC-ATGGCTGTATGCACATGACATGCACACCA-CCTTGTAAATTTGAGTTTTGTTGGCTT 1458
| |||| |||| | ||||||||| || | || |||| | | ||||||||||| ||
Sbjct 888 -CGATGGATGTAACCGTATGACATGCTCAG-ATCCATGTAGACATCAGTTTTGTTGGATT 945
Query 1459 TGCCTT-AAC 1467
|| ||| |||
Sbjct 946 TGTCTTGAAC 955
Score = 209 bits (113), Expect = 6e-53
Identities = 350/461 (76%), Gaps = 29/461 (6%)
Strand=Plus/Plus
Query 1594 AGATACACTCATTACTATGA-ACGCTGGGCAAGCAATCAAGT-GTCGAGGCAAAAAGCTA 1651
|||||||| ||||| ||| | | | ||||||| ||||||| | |||||||| ||| ||||
Sbjct 1039 AGATACACGCATTATTAT-ATAAGATGGGCAAACAATCAA-TCGTCGAGGCTAAAGGCTA 1096
Query 1652 TGGGGGATCTGCAGAAAATGCAATCAGAGAAGCTTGGGAAGCTTAGTGACATTCAGTGCA 1711
|| | |||||| |||| ||||||| | | ||||| | |||||||||| | || |||
Sbjct 1097 TGAGTGATCTGGAGAAGTTGCAATCGGTGCAGCTTAAGCAGCTTAGTGATAAACAAAGCA 1156
Query 1712 CACCAGAATCTCAGCT-CAAGTTTATCGCAGAGGCTTGGCTCCAGATCATTGAATGCA-G 1769
||||||| || | || ||| || | | ||| || ||| | |||||| | ||||| | |
Sbjct 1157 AACCAGAAACTGATCTCCAA-TTCACCTTAGATGCATGGATTCAGATCCTCGAATGTAGG 1215
Query 1770 ACGGGTAC-TGAAATGGACATATGCATATGGATACTATCTACAAGATCAT-GCTAAGAAA 1827
| | || | |||||||||||||||||||||||||||| || || |||| | || ||| |
Sbjct 1216 A-GAGT-CTTGAAATGGACATATGCATATGGATACTACCTTCATGATC-TCGCCAAGCGA 1272
Query 1828 CCATTTTTTGAGTATTTGCAAGGGGAGGCTGAGTCAGGTTTGGAGAGGCTCCA-CAAATG 1886
| |||||| ||||||||||||||||||||||| || |||| |||||||| || || ||
Sbjct 1273 CAATTTTTCGAGTATTTGCAAGGGGAGGCTGAAACAAGTTTAGAGAGGCTTCATCAT-TG 1331
Query 1887 CGTAGAGAAGGA-T--ATAGAGGTGTT-TGAACTTG--CTGAGGGCCCTTCAGAGGAA-T 1939
| |||||| || | | | || | || | || | |||| | || || || || |
Sbjct 1332 TGCAGAGAATGAGTTGAAACAG-T-TTATCAA-TAAAACTGAAGATCCATCCGA--AACT 1386
Query 1940 T-CAAT-CATTTCCGGACAAAATTAACTGGTTTAACCAGCATAACAAAAACCTTCTTTGA 1997
| | | | |||||||| ||||||||| ||| || | |||| ||||||| ||| ||
Sbjct 1387 TTCTCTGC-TTTCCGGATGAAATTAACTAATTTGACTAATGTAACTAAAACCTACTTCGA 1445
Query 1998 AAATCTGGTGAAAGCTCTGGAGAATGGTCTTGCTGATGTGG 2038
|||||||||||||||| |||| |||||||||||||||||||
Sbjct 1446 AAATCTGGTGAAAGCTTTGGAAAATGGTCTTGCTGATGTGG 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91226136775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5