BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05894.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470603 jgi|Araly1|470603|fgenesh2_kg.1__557__AT1G05894.1 2124 0.0
> Ahg470603 jgi|Araly1|470603|fgenesh2_kg.1__557__AT1G05894.1
Length=1415
Score = 2124 bits (1150), Expect = 0.0
Identities = 1338/1424 (94%), Gaps = 31/1424 (2%)
Strand=Plus/Plus
Query 4 TTACAGAAAGTGATTGGGCACTTCAATGGCTTTCACAAATGAAAAAGAT---GGATCTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TTACAGAAAGTGATTGGGCACTTCAATGGCTTTCACAAATGAAAAAGATGCAGGATCTAA 60
Query 61 GGGATTTGTGAAGAGAGTGGCTTCATCTTTCTCCATGAGGAAGAAGAAGAATGCAACAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGGATTTGTGAAGAGAGTGGCTTCATCTTTCTCCATGAGGAAGAAGAAGAATGCAACAAG 120
Query 121 TGAACCCAAGTTGCTTCCAAGATCGAAATCAACAGGTTCTGCTAACTTTGAATCCATGAG 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 TGAACCCAAGTTGCTTCCAAGATCGAAATCAACAGGTTCTACTAACTTTGAATCCATGAG 180
Query 181 GCTACCTGCAACGAAGAAGATTTCAGATGTCACAAACAAAACAAGGATCAAACCATTAGG 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GCTACCTGCAACAAAGAAGATTTCAGATGTCACAAACAAAACAAGGATCAAACCATCAGG 240
Query 241 TGGTGTAGCACCAGCACAACCAAGAAGGGAAAAGATCGATGATC------GTGGGA-CGA 293
||||||| ||||| ||||| ||||||||||||||||||||||| |||||| | |
Sbjct 241 TGGTGTAACACCACCACAATTAAGAAGGGAAAAGATCGATGATCGTGGTGGTGGGATC-A 299
Query 294 ATAACAAGTTTGGAAAATGGAGAAGCTTTGATGATAGTGATTCCATTTGGTTATCTTCAG 353
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 ATAACAAGTTTGTAAAATGGAGAAGCTTTGATGATAGTGATTCTATTTGGTTATCTTCAG 359
Query 354 ATTGTGCATCTCCTACTTCTCTTCTTGAGGAACGCAGGTTATCTGTTTCGTTTCGTTTCT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTGTGCATCTCCTACTTCTCTTCTTGAGGAACGCAGGTTATCTGTTTCGTTTCGTTTCT 419
Query 414 CGGTTGATGAGAGTGTAGTGTCTTGGTTATCAAACCTTGCCAAAACTTCCCTTTCTCTGA 473
||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||
Sbjct 420 CGGTTGATGAGAGTGTAGTCTCGTGGTTATCAAACCTTGCTAAAGCTTCCCTTTCTCTGA 479
Query 474 ATCATCAAGAAGTAAGTTCCATTAAAGACCGTCCCAGAATCCCGAGAAACACTAAAGAGA 533
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 ATCATCAAGAAGTAAGTTCCATTAAAGACCGTCCCAGAATCCCAAGAAACACTAAAGAGA 539
Query 534 ATGCAGAAAATATTCAGAAGAAAGATTCATCTCGTTCTGTTCCAAATCTCACCGTTGTAG 593
| | ||| |||||||||||||||| | |||||| |||||||||||||||| | |
Sbjct 540 A--C-----ATA--CAGAAGAAAGATTCATTTAGTTCTGCTCCAAATCTCACCGTTATTG 590
Query 594 ATTCTTCTACTCAGAGTTCACAAGGAAAGAAAG-TAAGCTTTTCAAAATCTTCAGGTACA 652
||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |
Sbjct 591 ATTCTTCTACTCAGAGTTCACAAGGAAAGAAAGTTAA-CTTTTCACAATCTTCAGGTATA 649
Query 653 CAACTTGAATCAGGAAATCATGCTTCTTCTCTGATAATCTCCTCTGATGTTCCATCTGAT 712
|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 650 GAACTTGAATCAGGAAATCATTCTCCTTCTCTGATAATCTCCTCTGATGTACCATCTGAT 709
Query 713 CTGAATAATCACACGGCAACATCTTTGGTTCGTGAGATATGTCTGGATGAGAAAAGTGCA 772
| |||||||||||||||||| |||||||||||| ||||| || |||||||||||||||||
Sbjct 710 CCGAATAATCACACGGCAACTTCTTTGGTTCGTAAGATAAGTTTGGATGAGAAAAGTGCA 769
Query 773 GAGATTGTGGATTCTAAGAGCAGTGGTAGTAATGTCGATGAGCCGCTTTTCTGGCCATAT 832
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 770 GAGATTGTGGATTCTAAGAGCAGTAGTAGTAATGTCGATGAGCCGCTTTTCTGGCCATAT 829
Query 833 GAACAGAGATTTGATTGGACACCTGAGGATATTTTGAAGCATTTCTCAATGTCACCTCGA 892
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 830 GAACAGAGATTTGATTGGACACCTGAGGATATCTTGAAGCATTTCTCAATGTCACATCGG 889
Query 893 AGAAAGAAATTATTGAATGCCAAAGTTTCTGCAGGTAGCTCTCCAAGATCCATGAGAGCA 952
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AGAAAGAAATTATTCAATGCCAAAGTTTCTGCAGGTAGCTCTCCAAGATCCATGAGAGCA 949
Query 953 CAACTTCTCCAAGCAAGAAAACTAGATCTTAAAGATGGTAGTAAGAGAAAGCTTGTGTTC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CAACTTCTCCAAGCAAGAAAACTAGATCTTAAAGATGGTAGTAAGAGAAAGCTTGTGTTC 1009
Query 1013 AATGGCCCTTTAACAAACGCAGCCAAGATTCCAGAGCTCAAAAGAA--AT-A--A----C 1063
||||||||||||||||||||| |||||||||||||||||||||||| || | | |
Sbjct 1010 AATGGCCCTTTAACAAACGCATCCAAGATTCCAGAGCTCAAAAGAACTATCAGCAATAAC 1069
Query 1064 AGCAACAAGAAAAATGACAGCATCAAGAACGAGCCCATCAGGAACTGCGTGAAGAGGAAC 1123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1070 AGCAACAAGAAAAATGACAGCATCAAAAACGAGCCCATCAGGAACTGCGTGAAGAGGAAC 1129
Query 1124 AAAAGTTTGCCGTCAAGGTTGAGAAACTCGAGCAAAACATGTTCAAAGGTTGTACCTTTT 1183
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1130 AAAAGTTTGCCATCAAGGTTGAGAAAATCAAGCAAAACATGTTCAAAGGTTGTACCTTTT 1189
Query 1184 GAAGTTGCAGAAGAAGTGATTGCAGCAGAGAGAGCCAAAGTGGAAATAACAGCTAGAAAG 1243
|||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1190 GAAGTTGCTGAAGAAGTGATTGCCGTAGAGAGAGCCAAAGTGGAAATAACAGCTAGAAAG 1249
Query 1244 CTCATAAACCGCAGAAGCAAGACAATGTTGGAAGACGATTTCTCATTGATGAATGACTTC 1303
||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||| ||
Sbjct 1250 CTCATAAACCGTAGAAGCAAGACAATGTTGGAAGATGATTTCGCATTGATTAATGATTTT 1309
Query 1304 TCAATAGAGAACGCAGTGGGGCTTGGTGAGTTCAAGGGTAGAGAGGGCATAGATTCAGAA 1363
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1310 TCAATAGAAAACGCAGTGGGGCTTGGTGAGTTTAAGGGTAGAGAGGGTATAGATTCAGAA 1369
Query 1364 TTTAACTCTGACATTTTCTTGTTCGATGATTCCCTTTAAAACTA 1407
||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 1370 TTTAACTCTGACACTTTCTTGTTCGATGATTCTCTTTGAAACTA 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5