BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05900.2
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470604 jgi|Araly1|470604|fgenesh2_kg.1__558__AT1G05900.2 1831 0.0
> Ahg470604 jgi|Araly1|470604|fgenesh2_kg.1__558__AT1G05900.2
Length=1313
Score = 1831 bits (991), Expect = 0.0
Identities = 1228/1337 (92%), Gaps = 38/1337 (3%)
Strand=Plus/Plus
Query 7 TGAATTTGATGAAACACAAAAATTGATTGGCTCTATGATTCTCACCGGAGCCGCTTCAAC 66
||| |||||||||||||||||||||| | | | | | | | ||||||||||||||||||
Sbjct 1 TGACTTTGATGAAACACAAAAATTGA-T-GAT-TCTCA--C-CACCGGAGCCGCTTCAAC 54
Query 67 ATTTCCCATCGTCGCTCGAGTTTTGAACGCTATGAATCGCCGTATGTATGCTGCTACTAC 126
||||| ||||| |||||||||||| || |||||||||||||| |||||||||||| ||||
Sbjct 55 ATTTCTCATCGCCGCTCGAGTTTTTAAGGCTATGAATCGCCGAATGTATGCTGCTGCTAC 114
Query 127 TCTATCATCTGCCAAATCAATCTCTGCAGAATCCCTAAAT-CT--T-C-G-TTCCGATTC 180
|||||||||||||||||| |||| ||||||||||||||| || | | | |||| |||
Sbjct 115 TCTATCATCTGCCAAATCCCTCTCCGCAGAATCCCTAAATCCTCGTCCGGATTCCAATTT 174
Query 181 CAATTCA-GAGGCAGCGCA-TGGTGCTTCTGAGTCTGAGACTCGAGTCTCTTTAAGGAAG 238
||||||| || ||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 175 CAATTCAGGA-GCAGC-CATTGGAACTTCTGAGTCTGAGACTCGAGTCTCTTTAAGGAAG 232
Query 239 AAGAGGATAAAGCAGGATGATTTGGAGCCTGTAAAGAAATGTTCC-GCCAGAGAAACCAA 297
|| ||| |||||||||| | ||| |||||||| || |||||||| | ||||| || |||
Sbjct 233 AAAAGGCTAAAGCAGGAAGCTTTAGAGCCTGTGCAGCAATGTTCCAG-CAGAGGAATCAA 291
Query 298 GGCCCGCAAGGACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAA 357
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 292 TGCCCGCAAGGAGATGTGTGGATTACCTGATATAGAAGACTCTCCTTACAAGAAGACTAA 351
Query 358 TGGAACTGCTTCATCTAGGACGAGAAAACTAAACTCATACATAAAATCAACAGAAGCTAG 417
|||| |||| |||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 352 TGGATCTGCGTCATCTAGGACGTCAAAAATAAACTCATTTATAAAATCAACAGAAGCTA- 410
Query 418 CCCTTCTGCATCGTCGATCAAAACAGCAGGGCTAGGCATACCACCTGAAAACTGGGAAAA 477
||| | |||||| ||| | || || |||||||||||||||||||||| ||||
Sbjct 411 -------GCA-CTTCGATC-AAA-A-CA--GC-AGGCATACCACCTGAAAACTGGAAAAA 456
Query 478 GGTGCTCGAGGGTATTCGAAAAATGAAACCTTCAGAAGAAGCACCAGTTAATGCTGTAGA 537
|||||||||||||||| |||||||||| ||||||||| |||||| | ||||||||||||
Sbjct 457 AGTGCTCGAGGGTATTCAAAAAATGAAATCTTCAGAAGTAGCACCGGCTAATGCTGTAGA 516
Query 538 ATGTGATAGAACCGGAAGCTTTTTACCTCCAAAGGAAAGGCGATTTTATGTGCTCATAGG 597
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 ACGTAATAGAACCGGAAGCTTTTTACCTCCAAAGGAAAGGCGATTTTATGTGCTCATAGG 576
Query 598 AACACTTCTTTCAAGTCAGACTAAAGAGCACATAACTGGTGCGGCAGTAGAACGACTTCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AACACTTCTTTCAAGTCAGACTAAAGAGCACATAACTGGTGCGGCAGTAGAACGACTTCA 636
Query 658 TCAAAATGGCCTTCTCACTCCTGAAGCCATTGACAAAGCCGATGAATCAACCATTAAGGA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TCAAAATGGCCTTCTCACTCCTGAAGCCATTGACAAAGCCGATGAATCAACCATTAAGGA 696
Query 718 ATTGATCTATCCGGTTGGATTCTATACTAGAAAGGCTACTAATGTGAAGAAAGTTGCAAA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 ATTGATCTATCCGGTTGGATTCTATACTAGAAAGGCTACTAATGTGAAGAAAGTTGCAAA 756
Query 778 AATATGTCTAATGGAATATGACGGTGACATTCCAAGGACTTTGGAAGAACTACTTTCACT 837
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 757 AATATGTCTAATGAAATATGACGGTGACATTCCAAGGACTTTGGAAGAACTACTCTCACT 816
Query 838 TCCAGGAGTTGGTCCTAAGATTGCTCATCTGGTTTTGCATGTAGCCTGGAATGATGTTCA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 TCCAGGAGTTGGTCCTAAGATTGCTCATCTGGTTTTGCATGTAGCCTGGAATGATGTTCA 876
Query 898 AGGGATATGTGTAGACACACATGTGCATCGTATTTGCAATAGACTTGGTTGGGTGTCTAA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 AGGGATATGTGTAGACACACATGTGCATCGTATTTGCAATAGACTTGGTTGGGTGTCTAA 936
Query 958 ACCTGGAACGAAACAGAAAACCTCGTCCCCTGAGGAAACTAGAGTAGCTCTGCAACAATG 1017
||| ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 937 ACCAGGAACAAAACAGAAAACCTTGTCCCCTGAGGAAACTAGGGTAGCTCTGCAACAATG 996
Query 1018 GCTTCCAAAAGGAGAATGGGTGGCTATAAACTTTCTGTTGGTAGGTTTTGGACAAACGAT 1077
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 997 GCTTCCAAAAGAAGAATGGGTGGCTATTAACTTTCTGTTGGTAGGTTTTGGACAAACGAT 1056
Query 1078 ATGCACACCGCTAAGACCACACTGTGGAACTTGTAGTATTACTGAGATTTGCCCTTCTGC 1137
||||||||||||||||||| |||||||||||||||||| ||||| | |||||||||||
Sbjct 1057 CTGCACACCGCTAAGACCACGCTGTGGAACTTGTAGTATCGCTGAGCTCTGCCCTTCTGC 1116
Query 1138 CTTCAAGGAGACCCCGAGCACATCATCCAAATTGAAGAAATCTATCAAAAGCAAGAAGCT 1197
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1117 CTTTAAGGAGACTCCGAGCACATCATCCAAATTGAAGAAATCTATCAAAAGCAAGAAACT 1176
Query 1198 TTAGTTGCTTTGGCTCTGGATT-CTCCTTCTAGATCATTGTTAAACCCATTTTTTGATTA 1256
|||||||||||||||||||||| |||||||||||||||| || |||||||||| ||||||
Sbjct 1177 TTAGTTGCTTTGGCTCTGGATTACTCCTTCTAGATCATTTTTTAACCCATTTTGTGATTA 1236
Query 1257 GT----CCTCGGTTAAAGTTAAATTGTATCCAAGATATTGTATAGCTTTATGGGGAATGC 1312
|| ||||||| |||||||||||||| |||||| |||||||||||||| |||||||||
Sbjct 1237 GTTAGTCCTCGGTAAAAGTTAAATTGTACCCAAGAAATTGTATAGCTTTACGGGGAATGC 1296
Query 1313 AAGAGCATCCCACTTGT 1329
|||||||||||||||||
Sbjct 1297 AAGAGCATCCCACTTGT 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51465937950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5