BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05920.1
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311675 jgi|Araly1|311675|fgenesh1_pm.C_scaffold_1000455 983 0.0
> Ahg311675 jgi|Araly1|311675|fgenesh1_pm.C_scaffold_1000455
Length=813
Score = 983 bits (532), Expect = 0.0
Identities = 724/815 (89%), Gaps = 20/815 (2%)
Strand=Plus/Plus
Query 414 ATGATTTCGCGTTATAACCaaaaaaaGGCCAAGACTGTCGCACAAGTAAAAGAAG-GGAA 472
|||| ||||||| ||||||||||||| ||||||||||||||||||||| ||||| | ||
Sbjct 1 ATGAGTTCGCGTGATAACCAAAAAAAACCCAAGACTGTCGCACAAGTAAGAGAAGAGAAA 60
Query 473 AGGTAAGAGAAGAGAAGAGATGATTTCGCGTGATAACCGAACAAAA-CCCAAGACTGTCG 531
||| ||||||||||||||||||| |||||||||||||| || |||| ||||||||||||
Sbjct 61 AGG-AAGAGAAGAGAAGAGATGAGTTCGCGTGATAACC-AAAAAAAGACCAAGACTGTCG 118
Query 532 CACAAGTAAGAGATGCGAAAAGGAAGAGAACCTTCGATCACGTCCCCAGAGGAACAAGGG 591
||||||||||||| | |||||| |||||| |||||||| |||||||| ||||| |||||
Sbjct 119 CACAAGTAAGAGAAGAGAAAAGAAAGAGATTCTTCGATCGCGTCCCCAAAGGAAAAAGGG 178
Query 592 AACCTCACGCATACCTTCGCAATGATCCAGCGCCTCAAGTTGCTTCTGTCCCCAAGAGTG 651
|| |||||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||
Sbjct 179 AAGGTCACGCATACCTTCGCAAGGATCCAGAGCCGCAAGTTGCTTCTGTCCCCAAGACTG 238
Query 652 TCCCAGAAGAGAAAGATGTGATATTGGATAGAATCTTGAGTAACGTCCCCAGAAGAAAAA 711
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TCCCAGAAGATAAAGATGTGATATTGGATAGAATCTTGAGTAACGTCCCCAGAAGAAAAA 298
Query 712 AGACTACTTCTTACGAATTCGTCCCACCAAAACACCCACAAGAACC------G-CAATGG 764
||||||| |||||||||| ||||| ||||||| ||||||||||||| | || ||
Sbjct 299 AGACTACCTCTTACGAATACGTCCGACCAAAAGACCCACAAGAACCGATAAAGACACCGG 358
Query 765 CTTCTCC---A-GG-TTAT-GA-GTCGCATGAACGGCGCTGGTGATCCGAAGCTAATCAT 817
| || | || || | | || ||||||||||||| ||||||||||||| ||||
Sbjct 359 AAGCACCAGAATGGCTTGTCCAGGT--TATGAACGGCGCTGATGATCCGAAGCTAGTCAT 416
Query 818 AGAGAAGAATCTGGACTCGAACGATGTTGATCCACGTCAAAACCGACTCTCAATCCCTAT 877
|| ||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 417 AGTGAAGACTCTGGACTCGAACGATGTTGATCCACTTCAAAACCGTCTCTCAATCCCTAT 476
Query 878 CAATACCGTAATCCAAAACGATTTCTTGACGCTTGACGAGTCAAGGTTGATTGATGAAGA 937
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 477 CAATAGCGTAATCCAAAACGATTTCTTGACGCTTGACGAGTCAAGATTGATTGATGACGA 536
Query 938 CGAAATCACTAACGAAGGGAATATGGGTGTTGCAGCGTTTCTTGTTGATCAGCGAACTAA 997
||| ||||||||| |||||||||||||||| ||| |||||||| | ||||| || | |||
Sbjct 537 CGACATCACTAACCAAGGGAATATGGGTGTGGCATCGTTTCTTATGGATCAACGTAGTAA 596
Query 998 GAAGTGGAACATGGGTTTTAAACAATGGTTTATGACGACTGATTCAGGGAGCAGTTACTG 1057
||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 597 AAAGTGGAACGTAGGTTTTAAGCAATGGTTTATGACGACTGATTCAGGGAGCAGCTACTG 656
Query 1058 GAGTTTTGTGTTGCGAGGTGAATGGAGCAACGTCGTTGAGACTAATGGACTGAAAGAAGG 1117
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 657 GAGTTTTGTGTTGAGAGGTGAATGGAGCAACGTCGTTAAGACTAATGGATTGAAAGAAGG 716
Query 1118 CGACAAAATCAGCCTTTGGTCTTTCAGGTCCAACGATATCCTCTGTTTTGCCCTTGTTCC 1177
|||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 717 CGACAACATCAGTCTTTGGTCTTTCAGGTCCAATGAAATCCTCTGCTTTGCCCTTGTTCC 776
Query 1178 TCCAACGAGCTCTGTTGTTGAGTCTTTAGATAAGT 1212
||| ||||||||||||||||| ||| |||||||||
Sbjct 777 TCCCACGAGCTCTGTTGTTGATTCTGTAGATAAGT 811
Score = 206 bits (111), Expect = 5e-52
Identities = 136/148 (92%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 336 ATGATTTCGCGTGATAACCaaaaaaaaaCCAAGACTGTCGCACAAGTAAGAGAAGAGAAA 395
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCGCGTGATAACCAAAAAAAACCCAAGACTGTCGCACAAGTAAGAGAAGAGAAA 60
Query 396 -GGTAAGAGAAGGGAAGAGATGATTTCGCGTTATAACCaaaaaaaGGCCAAGACTGTCGC 454
|| |||||||| |||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 61 AGG-AAGAGAAGAGAAGAGATGAGTTCGCGTGATAACCAAAAAAAGACCAAGACTGTCGC 119
Query 455 ACAAGTAAAAGAAGGGAAAGGTAAGAGA 482
|||||||| ||||| |||| | ||||||
Sbjct 120 ACAAGTAAGAGAAGAGAAAAGAAAGAGA 147
Score = 178 bits (96), Expect = 1e-43
Identities = 114/123 (93%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 282 AAACCCAAGACTTTCGCagaagtaagagaagagatatgtaagagaagagaagagaTGATT 341
|||||||||||| ||||| ||||||||||||||| | | ||||||||||||||||||| |
Sbjct 25 AAACCCAAGACTGTCGCACAAGTAAGAGAAGAGAAAAGGAAGAGAAGAGAAGAGATGAGT 84
Query 342 TCGCGTGATAACCaaaaaaaaaCCAAGACTGTCGCACAAGTAAGAGAAGAGAAAGGTAAG 401
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 85 TCGCGTGATAACCAAAAAAAGACCAAGACTGTCGCACAAGTAAGAGAAGAGAAAAGAAAG 144
Query 402 AGA 404
|||
Sbjct 145 AGA 147
Score = 102 bits (55), Expect = 7e-21
Identities = 65/70 (93%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 492 ATGATTTCGCGTGATAACCGAACAAAACCCAAGACTGTCGCACAAGTAAGAGATGCGAAA 551
|||| |||||||||||||| || |||||||||||||||||||||||||||||| | ||||
Sbjct 1 ATGAGTTCGCGTGATAACCAAAAAAAACCCAAGACTGTCGCACAAGTAAGAGAAGAGAAA 60
Query 552 AGGAAGAGAA 561
||||||||||
Sbjct 61 AGGAAGAGAA 70
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55268945495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5