BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05930.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311676 jgi|Araly1|311676|fgenesh1_pm.C_scaffold_1000456 662 0.0
> Ahg311676 jgi|Araly1|311676|fgenesh1_pm.C_scaffold_1000456
Length=1023
Score = 662 bits (358), Expect = 0.0
Identities = 776/962 (81%), Gaps = 92/962 (10%)
Strand=Plus/Plus
Query 66 GGCTACGTTGAGTGATGAAGAACAACGCGCAAGaaaaggaaaagccaagattgtctgtaa 125
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 84 GGCTACGTTGAATGATGCAGAACAACGCGCAAGAAAAGGAAAAGCCAAGATTGTCTCTAA 143
Query 126 agaagaagaccacgtctttatcaaaaagaaagaaa-aaTACGAGGAAGAGAGCGAGAAGA 184
|||||||||| |||||||||||||||||||| ||| | | || ||||||||||||||||
Sbjct 144 AGAAGAAGACAACGTCTTTATCAAAAAGAAA-AAAGACGATGACGAAGAGAGCGAGAAGA 202
Query 185 GGGAATTCTTCAGTCATGTCCCCAGAAAGATAAGGCCTGCGCTTAGATACCCACAACCTA 244
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 AGAAATTCTTCAGTCATGTCCCCAGAAAGATAAGGCCTGCGCTTAGATACCCACAACCTA 262
Query 245 ACTTTGAAAACCCTAATGGGGCTTCTTCTTCTT-TAAA-C---TTACCCTTCGAAGAAGA 299
|||||||||||||||||||||||||| |||||| | | | || |||| || |
Sbjct 263 ACTTTGAAAACCCTAATGGGGCTTCTACTTCTTCTTCATCGCCTTGTTCTTC-AACCTTA 321
Query 300 C--T----A--CTACATGGCTGA-GTACTACAAGAAGACGGAGACCATAAACCCACCTAA 350
| | | |||||| |||| | | ||||||||||| |||| | ||||||| | ||
Sbjct 322 CCCTTTGGAAACTACATCCCTGATG-AGTACAAGAAGACAGAGATGAAAAACCCATCAAA 380
Query 351 CCCTTATCACCAATGGTCTCCTTCTTCGTT-CTTAACGGAGTACACACACCCTAG-GA-- 406
| || |||||||||||||||| | | ||| || ||||||||||||| |||| | ||
Sbjct 381 CACTAATCACCAATGGTCTCCATATCCGTGGCT-AACGGAGTACACAAACCCCACCGAGG 439
Query 407 TGCTTGAGGTGTTACATCGC-----T-GTGG---ATTCAACAGACC-AGTGGTAACTTGT 456
||| |||| ||||||| | | |||| |||||| | ||| | |||||||| |
Sbjct 440 TGCGTGAGATGTTACAGAGAAGGAGTAGTGGTGGATTCAAGAAACCGAA-GGTAACTTTT 498
Query 457 TATTC-AAGGACGGCCA-GGGAGATGCGGTGGTGGC--TTCGCCAGGTGATGAAAGACAT 512
| ||| ||||| || | ||| ||||| |||||||| || | ||||||||| ||||||
Sbjct 499 T-TTCCAAGGA-GGACGTGGGGGATGCCGTGGTGGCAATTT-C-AGGTGATGAGAGACAT 554
Query 513 GAGA-GCAGAAGACCTAACACTTATCTTAGAGAAGACTCTGTCCACAA-CTGATGTGATC 570
|| | | ||||||||| ||||| |||||||||||||||||||||| || ||||||| | |
Sbjct 555 GA-ATGGAGAAGACCTGACACTAATCTTAGAGAAGACTCTGTCCA-AATCTGATGTCAAC 612
Query 571 ACAACGACACATGG-CCGTTTCTCAATGCATTTCAACAGATTAATCAGTAACGACTTCTT 629
|||| || ||| |||| ||| ||||| ||||||||| |||||||| ||||| |||||
Sbjct 613 CCAAC-AC---TGGGCCGTCTCTTAATGCCTTTCAACAGCTTAATCAGGAACGAGTTCTT 668
Query 630 GAAGCCTGAGGAGCGGAGTATCCTAGAAGAAGATACCTACAATGATGA-GACGAT--G-- 684
|| ||||||||||||||||||| |||||||||||| | |||||||||| || || |
Sbjct 669 GACGCCTGAGGAGCGGAGTATCATAGAAGAAGATATCGACAATGATGATGATGAGAAGAT 728
Query 685 GGA-GTTGGAGCCATTCTCGTGGATCAAAGGTCTCAAAAGTGGAGTGTGATTTTGAAGA- 742
||| || ||||||||||||||||||| ||||| | |||||||| ||||| |||||||||
Sbjct 729 GGAAGTGGGAGCCATTCTCGTGGATCCAAGGTTTGAAAAGTGGGGTGTGGTTTTGAAGAA 788
Query 743 --G--A--TGGGG---C---CAG-AAT--TA--CT----TT-CTGA--G--TTGTGGCTG 776
| | ||||| | ||| || || || || ||| | |||||| ||
Sbjct 789 ATGGGAGGTGGGGAATCATTCAGGAAACGTAAGCTGGAATTACTGTTTGACTTGTGGTTG 848
Query 777 GAACGACGTTGTTAAGGCTAATAAATTGAAAG-CTGGCGACGACATCTGTCTTTGGGCGT 835
|||||| ||||||||||||||| | ||||||| | || ||| ||||| || |||||||||
Sbjct 849 GAACGATGTTGTTAAGGCTAATGATTTGAAAGAC-GGTGACAACATCGGTGTTTGGGCGT 907
Query 836 TTAGGTGCGATGGAGTCCTCTGTTTTGCCATGAGGCAGTGGCGTGGAATCCTCTGTTTTG 895
||||||||| ||||||||||||||||||| | | || ||||||||||| ||||| |
Sbjct 908 TTAGGTGCGGTGGAGTCCTCTGTTTTGCCCTTATGC-----CGTGGAATCCTATGTTT-G 961
Query 896 CTCTTGTTCCTCCTCTTACATTGAGACAGAGTAGCTCTTCCAATGCTCGCCGTCTCTGCT 955
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 962 CCCTTGTTCCTCCTCTTACATTGAGACAGAGTAGCTCTTCCAATGCTCTCCGTCTCTGCT 1021
Query 956 AA 957
||
Sbjct 1022 AA 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5