BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05970.2
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470610 jgi|Araly1|470610|fgenesh2_kg.1__564__AT1G05970.2 924 0.0
> Ahg470610 jgi|Araly1|470610|fgenesh2_kg.1__564__AT1G05970.2
Length=679
Score = 924 bits (500), Expect = 0.0
Identities = 620/679 (91%), Gaps = 4/679 (1%)
Strand=Plus/Plus
Query 50 GTTCAGTGATGGCGACTCCGGAAGAAGT-AGCGTATGAGAAGTTCCTAGAGAGAGTTCGT 108
||| ||||||||| |||||||||||| | ||||||||| ||||| ||||||||||||||
Sbjct 1 GTTTAGTGATGGCTACTCCGGAAGAA-TCAGCGTATGACAAGTTTCTAGAGAGAGTTCGC 59
Query 109 CGTACTGTCTACGTAGACGAACTCACGCCTCTTGCCACAGCTCCTGTTATTTCATCTGCT 168
|||||||| || |||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 60 CGTACTGTGTATATAGACGAACTCACGCCTCTTGCCACAACTCCGGTTATTGAATCTGCT 119
Query 169 TTCAATCAGTTTGGGACTGTCAAGAAAGTCAGCTTCATACCTAACTACTTGGGTCCAAAG 228
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 120 TTCAATCAGTTTGGGACTGTCAAGAAAGTCAGCTTCATACCAAACTTCTTGGGTCCAAAG 179
Query 229 GAGCTTCCTATGGGTGTTCTTGTTGAGATGGAGAATGAAGAGATGACACAGGCTGTTATC 288
|||||||||||| ||||||| ||||||||||||| |||||| ||| |||| |||||||||
Sbjct 180 GAGCTTCCTATGAGTGTTCTCGTTGAGATGGAGACTGAAGATATGGCACAAGCTGTTATC 239
Query 289 TCTACTGTCTCACAGTTACCTTTCATGGTTGCTGGTATGCCAAGGCCTGTGAGAGCTTGT 348
|| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||| ||
Sbjct 240 TCCACTGTCTCACAGTTACCTTTTATGGTTGCTGGAATGCCCAGGCCTGTCAGAGCTAGT 299
Query 349 GCTGCTGAGCCTAATATGTTTGTTGATAAACCGAAGAAGCCTGGTAGAACGGTCCGTTTT 408
||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct 300 GCTGCTGAGCCTAATATGTTTGTGGATCGACCGAAGAAGCCTGGTAGAACCATCCGTTTT 359
Query 409 CGCTGGATTAAGCCTAACGATCCTGATTTCGACAAGGCCAGGAGAGTCAAGCGGCTTGCT 468
||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 360 CGCTGGATTGGGCCTAACGATCCTGATTTCGACAAGGCCAGGAGAATGAAGAGGCTTGCT 419
Query 469 CGTAAGCATAGTGCTGAAAATTCGTTCATGCTCAAGAAACAGCTTGAGGAGGCAGAGAAG 528
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 CGTAAGCATACTGCTGAAAATTCGTTCATGCTCAAGAAACAGCTTGAGGAGGCAGAAAAA 479
Query 529 CTGTCGAAACAGCAAGCTGAGACGGCGGTAACACATCACAAGAAGTTTGAGATGATGGAT 588
||||| || |||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 480 CTGTCCAAGCAGCAATCTGAGACGGCCTTAACACATCATAAGAAGTTTGAGATGATGGAT 539
Query 589 AAACTCCTCTACGATGGTGTTGCTCAGAAACTGGCTGGCCGTTACGACC-TGAAAGGTTT 647
||||||||||||||||| ||||||||||||||||||| ||||||| | | ||||| ||||
Sbjct 540 AAACTCCTCTACGATGGCGTTGCTCAGAAACTGGCTGACCGTTAC-AGCATGAAATGTTT 598
Query 648 TCCTTATCGGTAGAGAGAGACTGCATATGGTATTTTGCTTAGAACTTCCTTATGTCACTA 707
||||||||| |||||||| || |||||||||||||||||||||||| |||||| |||||
Sbjct 599 TCCTTATCGCTAGAGAGACACACCATATGGTATTTTGCTTAGAACTTGCTTATGCCACTA 658
Query 708 GTTTGTGCAGTGTCTATTT 726
|||||||||||||||||||
Sbjct 659 GTTTGTGCAGTGTCTATTT 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5