BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G05990.1
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919305 jgi|Araly1|919305|scaffold_100586.1 763 0.0
Ahg943386 jgi|Araly1|943386|scaffold_603930.1 388 2e-107
> Ahg919305 jgi|Araly1|919305|scaffold_100586.1
Length=494
Score = 763 bits (413), Expect = 0.0
Identities = 452/471 (96%), Gaps = 2/471 (0%)
Strand=Plus/Plus
Query 125 CTACAACTTTAAAAGAGATGGATCCGACAGAGCTAAAACGCGTGTTCCAAATGTTCGACA 184
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 4 CTACAAATTTAAAAGAGATGGATCCGACAGAGCTAAAACGTGTGTTCCAAATGTTCGACA 63
Query 185 AGAACGGGGACGGGACGATCACGGGGAAAGAGCTGAGCGAGACACT-ACGAAGCCTAGGG 243
|||| || |||||||| |||||||||||||||||||| |||||||| | |||||| |||
Sbjct 64 AGAATGGCGACGGGACAATCACGGGGAAAGAGCTGAGTGAGACACTGA-AAAGCCTCGGG 122
Query 244 ATTTACATCCCGGACAAGGAGTTGACTCAAATGATCGAGAAGATCGACGTGAATGGTGAT 303
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ATTTACATCCCCGACAAGGAGTTGACTCAAATGATCGAGAAGATCGACGTGAATGGTGAC 182
Query 304 GGGTGCGTGGACATAGACGAGTTTGGTGAGCTATACAAGACGATAATGGACGAGGAAGAC 363
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 183 GGGTGCGTGGACATAGACGAGTTTGGTGAGCTTTACAAGACGATAATGGACGAGGAAGAC 242
Query 364 GAAGAAGAAGAGGACATGAAAGAAGCTTTCAATGTGTTTGATCAGAATGGAGATGGGTTT 423
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 243 GAAGAAGAAGAGGACATGAAGGAAGCTTTCAATGTGTTTGATCAGAATGGAGATGGGTTT 302
Query 424 ATAACGGTGGATGAATTGAAGGCGGTTTTGTCTTCCTTGGGGCTCAAACAAGGTAAGACC 483
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ATAACCGTGGATGAATTGAAGGCGGTTTTGTCTTCCTTGGGGCTCAAACAAGGTAAGACC 362
Query 484 TTGGACGATTGTAAGAAGATGATAAAGAAAGTGGATGTTGATGGTGATGGTAGGGTTAAC 543
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 363 TTGGATGATTGTAAGAAGATGATAAAGCAAGTGGATGTTGATGGTGATGGTAGGGTTAAC 422
Query 544 TACAAAGAGTTTAGACAAATGATGAAAGGCGGTGGTTTTAATTCTTTGTAG 594
||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 423 TACAACGAGTTTAGACAAATGATGAAAGGCGGTGGTTTTAGTTCTTTGTAG 473
> Ahg943386 jgi|Araly1|943386|scaffold_603930.1
Length=508
Score = 388 bits (210), Expect = 2e-107
Identities = 392/477 (82%), Gaps = 23/477 (5%)
Strand=Plus/Plus
Query 121 AACACTACAACTTT-AAAAGAGATGGA-TCCGACAGAGCTAAAACGCGTGTTCCAAATGT 178
||| || ||| ||| |||| | ||||| ||| || ||||||||||| |||||||||||||
Sbjct 3 AACCCT-CAATTTTAAAAACAAATGGATTCC-ACGGAGCTAAAACGTGTGTTCCAAATGT 60
Query 179 TCGACAAGAACGGGGACGGGACGATCACGGGGAAA-GAGCTGAGCGAGACACT-ACGAAG 236
|||||||| |||| ||||| | |||||| ||| ||||||| |||| || | | |||
Sbjct 61 TCGACAAGGACGGAGACGGTAGGATCAC-TACAAAGGAGCTGAACGAGTCATTAAAGAA- 118
Query 237 CCTAGGG-AT-TTACATCCCGGACAAGGAGTTGACTCAAATGATCGAGAAGATCGACGTG 294
||| ||| || || ||||| || || ||| | || ||||| ||| | |||||||| ||
Sbjct 119 CCT-GGGTATCATA-ATCCCCGAAAACGAGCTAACGCAAATTATCCAAAAGATCGATGTT 176
Query 295 AATGGTGATGGGTGCGTGGACATAGACGAGTTTGGTGAGCTATACAAGACGATAAT-G-- 351
|||||||| || || || ||||| || |||||||| ||||| |||||||||||||| |
Sbjct 177 AATGGTGACGGTTGTGTTGACATTGAAGAGTTTGGAGAGCTTTACAAGACGATAATGGTT 236
Query 352 GACGAGGAAGACGA---AGAAGAAGAGGACATGAAAGAAGCTTTCAATGTGTTTGATCAG 408
|| || || ||||| || |||||| || ||||| ||||| ||||| || ||||||| |
Sbjct 237 GAAGATGAGGACGAGGTAGGAGAAGAAGATATGAAGGAAGCGTTCAACGTATTTGATCGG 296
Query 409 AATGGAGATGGGTTTATAACGGTGGATGAATTGAAGGCGGTTTTGTCTTCCTTGGGGCTC 468
|| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 297 AACGGAGATGGGTTTATAACGGTGGATGAATTGAAAGCGGTTTTATCTTCCTTGGGACTC 356
Query 469 AAACAAGGTAAGACCTTGGACGATTGTAAGAAGATGATAA-AGAAAGTGGATGTTGATGG 527
|| ||||||||||||||||| || |||| ||| ||||||| | || ||||||||||||||
Sbjct 357 AAGCAAGGTAAGACCTTGGAGGAATGTAGGAAAATGATAATACAA-GTGGATGTTGATGG 415
Query 528 TGATGGTAGGGTTAACTACAAAGAGTTTAGACAAATGATGAAAG-GCGGT-GGTTTT 582
||||||||||||| | ||||| ||||||||||||||||||||| | ||| ||||||
Sbjct 416 TGATGGTAGGGTTGATTACAAGGAGTTTAGACAAATGATGAAAAAG-GGTCGGTTTT 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21748685730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5