BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06000.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919306 jgi|Araly1|919306|scaffold_100587.1 2117 0.0
> Ahg919306 jgi|Araly1|919306|scaffold_100587.1
Length=1346
Score = 2117 bits (1146), Expect = 0.0
Identities = 1280/1345 (95%), Gaps = 8/1345 (1%)
Strand=Plus/Plus
Query 72 AGAAAGaaaaaaaCATCA-ATCATGACAACAACAACAACGAAGAAGCCGCACGTTCTGGT 130
||||||||||||| | || |||||||| || | ||||||||||||||||||||||||||
Sbjct 1 AGAAAGAAAAAAA-AACACATCATGACGAC--C-ACAACGAAGAAGCCGCACGTTCTGGT 56
Query 131 GATACCGTTTCCACAATCCGGTCACATGGTTCCACATCTTGACCTCACGCATCAGATTCT 190
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 57 CATACCGTTTCCACAGTCCGGTCACATGGTTCCACATCTTGACCTCACTCATCAGATTCT 116
Query 191 TCTCCGTGGAGCCACCGTCACTGTCCTCGTCACACCCAAAAACTCTTCCTATCTCGATGC 250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 117 TCTCCGTGGAGCCACCGTCACTGTCCTCGTCACACCCAAAAACTCTTCCTATCTCGATTC 176
Query 251 TCTCCGTTCTCTTCACTCCCCGGAACACTTCAAAACCCTAATCCTTCCTTTTCCTTCTCA 310
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCTCCGTTCACTTCACTCGCCGGAACACTTCAAAACCCTAATCCTTCCTTTTCCTTCTCA 236
Query 311 CCCTTGTATACCTTCCGGTGTCGAATCTCTCCAGCAACTTCCTCTCGAAGCTATAGTTCA 370
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 237 CCCTTGTATACCTTCCGGTGTCGAAACTCTCCAGCAACTTCCTCTCGAAGCTATAGTTCA 296
Query 371 CATGTTTGATGCTCTCTCTCGTCTCCACGACCCTCTCGTTGACTTTCTCAGCCGTCAACC 430
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TATGTTTGAAGCTCTCTCTCGTCTCCACGACCCTCTCGTTGACTTTCTCAGCCGTCAACC 356
Query 431 ACCGTCGGATCTCCCCGACGCCATCCTAGGAAGCTCATTTCTCAGCCCTTGGATTAACAA 490
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 357 ACCGTCGGATCTCCCCGACGCTATCCTTGGAAGCTCATTTCTCAGCCCTTGGATTAACAA 416
Query 491 AGTAGCTGATGCTTTCTCTATTAAGTCCATTAGTTTCTTACCCATCAATGCTCATTCGAT 550
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 417 AGTAGCTGATGCTTTCTCTATTAAGTCCATTTGTTTCTTACCCATCAATGCTCATTCGAT 476
Query 551 CTCCGTCATGTGGGCTCAAGAAGATAGAAGCTTCTTCAACGATCTCGAGACTGCCACAAC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTCCGTCATGTGGGCTCAAGAAGATAGAAGCTTCTTCAACGATCTCGAGACTGCCACAAC 536
Query 611 GGAAAGCTACGGGCTCGTCATCAACAGTTTCTACGACCTCGAGCCTGAGTTTGTAGAAAC 670
||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||
Sbjct 537 GGAAAGCTACGGGCTCGTCGTCAACACTTTCTACGAACTCGAGCCTCAGTTTGTAGAAAC 596
Query 671 TGTTAAAACACGTTTCCTGAATCACCACCGTATATGGACCGTCGGACCGTTGCTCCCCTT 730
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 597 TGTTAAAACACGTTTCCTGAATCACCACCGTATCTGGACTGTCGGACCGTTGCTCCCCTT 656
Query 731 TAAAGCTGGCGTTGACCGTGGCGGACAAAGCTCAATCCCGCCGGCGAAAGTCTCGGCTTG 790
|||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 657 TAAAGCCGGCGTTGACCGTGGCGGGCAAAGCTCAATCCCGCCGGAGAAAGTCTCGGCATG 716
Query 791 GTTAGATTCGTGCCCCGAGGATAACTCCGTCGTATACGTCGGTTTTGGAAGCCAGATCCG 850
|||||||||||| |||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 717 GTTAGATTCGTGTCCCGAGGATAACTCCGTCGTTTACATCGGTTTTGGGAGCCAGATCCG 776
Query 851 GCTCACGGCGGAGCAAACAGCTGCTTTAGCGGCGGCGTTGGAGAAAAGCAGTGTGCGTTT 910
||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 777 GCTGACGGCTGAGCAAACGGCTGCTTTAGCGGCGGCGTTGGAGAAAAGTGGTGTGCGTTT 836
Query 911 CATATGGGCGGTGAGAGACGCAGCTAAGAAGGTGAACTCCAGCGATAACTCCGTTGAGGA 970
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 837 CATATGGGCGGTGAGGGACGCAGCTAAAAAGGTGAACTCCAGCGATAACTCCGGCGAGGA 896
Query 971 AGATGTGATCCCGGCGGGATTTGAAGAGAGAGTGAAGGAGAAAGGACTCGTGATAAGAGG 1030
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 897 AGATGTGATTCCGGCGGGATTTGAAGAGAGAGTGAAGGAGAAAGGACTTGTGATAAGAGG 956
Query 1031 ATGGGCCCCACAAACTATGATTCTTGAGCATCGAGCCGTTGGATCTTACCTAACTCATTT 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ATGGGCCCCACAAACTATGATTCTTGAGCATCGAGCCGTTGGATCTTACCTAACTCATTT 1016
Query 1091 GGGTTGGGGTTCGGTTCTGGAAGGAATGGTCGGAGGAGTTATGTTGCTAGCGTGGCCGAT 1150
||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1017 GGGATGGGGTTCGGTTCTAGAAGGAATGGTCGGAGGAGTTCTGTTGCTTGCGTGGCCGAT 1076
Query 1151 GCAAGCAGACCATTTCTTTAACACGACGCTCATCGTTGATAAACTAAGAGCCGCAGTGCG 1210
|||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1077 GCAAGCAGACCACTTCTTCAACACGACGCTGGTCGTTGATAAACTAAAAGCCGCAGTGCG 1136
Query 1211 AGTTGGAGAGAACAGAGACTCGGTTCCTGACTCGGACAAGCTCGCTAGGATTTTGGCTGA 1270
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1137 AGTTGGAGAGAACAGAGACTCGGTTCCTGACTCGGACGAGCTCGCTAGGGTTTTGGCTGA 1196
Query 1271 GTCGGCGAGAGAGGACTTGCCGGAGAGAGTTACGTTGATGAAGCTGAGGGAGAAAG-CTA 1329
||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 1197 GTCCGTGAGAGAGGACTTGCCGGAGAGAGTTACGTTGATGAGGCTGAGGGAGAAAGGC-A 1255
Query 1330 TGGAGGCCATTAAAGAAGGTGGGAGCTCTTACAAGAACTTGGATGAGCTCGTTGCAGAGA 1389
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1256 TGGAGGCCATTAAAGAAGGTGGGAGCTCTTACAAGAGCTTGGATGAGCTCGTCGCAGAGA 1315
Query 1390 TGTGTTTGTAATAAA-TATCCTCTT 1413
||||| ||||||||| ||| |||||
Sbjct 1316 TGTGTGTGTAATAAAATATTCTCTT 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5