BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G06010.1

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg910284 jgi|Araly1|910284|Al_scaffold_0001_538                     372    2e-102


> Ahg910284 jgi|Araly1|910284|Al_scaffold_0001_538
Length=240

 Score =  372 bits (201),  Expect = 2e-102
 Identities = 227/239 (95%), Gaps = 3/239 (1%)
 Strand=Plus/Plus

Query  70   ATGGGAAGAGAGAAGAGCCCTGGTTTGAAGATCCTCTGGGTATGGACTATCGGCACTGCT  129
            ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct  1    ATGGGAAGAGAGAAGAGCCCTGGCTTGAAGATCCTCTGGATATGGACTATCGGCACTGCT  60

Query  130  GCTATATTGGTGACAAGTGTTGTCCGCACAAGAATGCAGGATATGCAAACAATGATGAAC  189
            |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct  61   GCTATATTGGTGACGAGTGTTGTCCGCACGAGAATGCAGGATATGCAATCAATGATGAAC  120

Query  190  CAGAACCAGGAACAAGCACCAAAAGAAAACCAGAACGGAAGTGCAGGTGATTCTTCCGTC  249
            |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct  121  CAGAACCAGGAACAAGCACCGAAAGAAAACCAGAACGTAAGTGCAGGTGATTCTTCCGTC  180

Query  250  TTAATGGATGAAACAGTTTTGCCTGAGTCGGATCGAGAGATTGCAGAAA-AGCTTTAAA  307
            |||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||
Sbjct  181  TTAACGGATGAAACAGTTTTGCCTGAGTCCGATCGAGAGATTGCA-AAAGAGCTT-AAA  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23178733536


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5