BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06020.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311681 jgi|Araly1|311681|fgenesh1_pm.C_scaffold_1000461 1624 0.0
Ahg470615 jgi|Araly1|470615|fgenesh2_kg.1__569__AT1G06030.1 1262 0.0
> Ahg311681 jgi|Araly1|311681|fgenesh1_pm.C_scaffold_1000461
Length=1038
Score = 1624 bits (879), Expect = 0.0
Identities = 986/1039 (95%), Gaps = 2/1039 (0%)
Strand=Plus/Plus
Query 1 ATGGCATCATCCACCGGCGAGAAAGGTCTCATCGTGAGCTTCGGCGAGATGCTCATTGAC 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCTCATCCACCGGCGAGAAAGGTCTCATCGTGAGCTTCGGCGAGATGCTCATTGAC 60
Query 61 TTCGTCCCTACCGTATCCGGCGTCTCCCTCTCCGAATCCCCCGGATTTCTCAAAGCTCCC 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TTCGTCCCTACTGTATCCGGCGTCTCCCTCTCCGAATCCCCCGGATTTCTCAAGGCTCCG 120
Query 121 GGCGGTGCTCCGGCCAACGTCGCCATCGCTGTTTCACGTCTTGGAGGTCGTGCCGCCTTC 180
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 GGCGGTGCTCCGGCCAACGTCGCCATCGCTGTCTCACGTCTCGGAGGTCGTGCCGCCTTC 180
Query 181 GTTGGGAAGCTGGGAGACGATGATTTCGGTCATATGCTCGCCGGAATCTTGAGAAAGAAC 240
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTAGGGAAGCTCGGAGACGATGATTTCGGTCATATGCTCGCCGGAATCTTGAGAAAGAAC 240
Query 241 GGTGTCGACGATCAGGGGATCAATTTCGACGAAGGGGCGAGAACTGCACTCGCTTTTGTC 300
|||||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||
Sbjct 241 GGTGTCGACGATCAGGGGATCAATTTCGACAAAGGAGCAAGAACCGCACTCGCTTTTGTG 300
Query 301 ACTTTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATG 360
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTCTGCGTTCCGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATG 360
Query 361 CTTCTCCGGCCAGATGAACTGAATCTTGAACTTATCAGATCCGCGAAAGTGTTCCACTAT 420
|||||||||||||| ||||| || || ||||| |||||||||||||| ||||||||||||
Sbjct 361 CTTCTCCGGCCAGACGAACTCAACCTCGAACTAATCAGATCCGCGAAGGTGTTCCACTAT 420
Query 421 GGATCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGATCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTG 480
Query 481 GCGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTTTGGCCA 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 GCGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTGAGGGAACCTCTTTGGCCA 540
Query 541 TCACCTGAAGAAGCTAGGACACAGATCATGAGTATCTGGGACAAGGCTGACATCATTAAG 600
|| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCCCCTGAAGAAGCTCGGACTCAGATCATGAGTATCTGGGACAAGGCTGACATCATTAAG 600
Query 601 GTCAGTGACGTGGAGCTTGAATTCTTGACCGAAAACAAAACCATGGATGATAAGACAGCA 660
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 601 GTCAGTGACGTTGAGCTTGAGTTCTTGACCGAAAACAAAACGATGGATGATAAGACAGCT 660
Query 661 ATGTCTCTATGGCATCCCAACCTTAAGCTCTTGCTTGTTACTCTCGGCGAAAAGGGATGT 720
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGTCTCTATGGCATCCCAATCTGAAGCTCTTGCTTGTTACTCTCGGCGAAAAGGGATGT 720
Query 721 ACTTATTTCACAAAGAAATTCCATGGATCGGTAGAAACATTCCATGTGGACGCCG-TGGA 779
||||||||||||||||| ||||||||||| || |||||||||| ||||||||| | | ||
Sbjct 721 ACTTATTTCACAAAGAATTTCCATGGATCAGTTGAAACATTCCTTGTGGACGC-GATAGA 779
Query 780 TACTACCGGAGCTGGAGATTCGTTTGTTGGTGCACTTCTACAACAGATTGTTGATGACCA 839
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 780 TACTACCGGAGCTGGAGATTCGTTTGTTGGTGCGCTTCTAAAACAGATTGTTGATGACCA 839
Query 840 GTCCGTACTCGAGGATGAAGCGAGGTTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGG 899
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 840 ATCCGTACTCGAGGATGAAGCTAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGG 899
Query 900 AGCCATCACAACAACTAAAAAAGGAGCCATTCCAGCTCTTCCTACAGACATTGAAGCTCT 959
||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 900 AGCCATCACGACAACTAAAAAGGGAGCCATACCAGCTCTTCCTACAGACAGTGAAGCTCT 959
Query 960 CAGTTTTCTTAAAGACCAAAAGAAACGTCAAACCAATCTTAAATTCTCAAAATGGTGTTG 1019
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||
Sbjct 960 TAGTTTTCTTAAAGACAAAAAGAAACGTCAAACTTATCTTAAATTCTCAAAATTGTGTTG 1019
Query 1020 TACGGCTTCTCCTTGTTAA 1038
||||||| |||||||||||
Sbjct 1020 TACGGCTCCTCCTTGTTAA 1038
> Ahg470615 jgi|Araly1|470615|fgenesh2_kg.1__569__AT1G06030.1
Length=1012
Score = 1262 bits (683), Expect = 0.0
Identities = 898/1001 (90%), Gaps = 17/1001 (2%)
Strand=Plus/Plus
Query 8 CATCCACCGGCGAGAAAGGTCTCATCGTGAGCTTCGGCGAGATGCTCATTGACTTCGTCC 67
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 20 CATCCACCGGCGATAAAGGTCTCGTCGTGAGCTTCGGCGAGATGCTCATTGACTTCGTCC 79
Query 68 CTACCGTATCCGGCGTCTCCCTCTCCGAATCCCCCGGATTTCTCAAAGCTCCCGGCGGTG 127
| || | |||||||||||||||||| |||||| |||||||||||||||||||||| ||||
Sbjct 80 CCACGGAATCCGGCGTCTCCCTCTCTGAATCCTCCGGATTTCTCAAAGCTCCCGGTGGTG 139
Query 128 CTCCGGCCAACGTCGCCATCGCTGTTTCACGTCTTGGAGGTCGTGCCGCCTTCGTTGGGA 187
|||||||||||||||||||||| || |||||||| |||||||| || |||||||| || |
Sbjct 140 CTCCGGCCAACGTCGCCATCGCCGTCTCACGTCTCGGAGGTCGCGCTGCCTTCGTAGGAA 199
Query 188 AGCT-GGGAGACGATGATTTCGGTCATATGCTCGCCGGAATCTTGAGAAAGAACGGTGTC 246
| || ||| || ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 200 AACTCGGG-GATGATGATTTCGGCCATATGCTTGCCGGAATCTTGAGAAAGAACGGTGTC 258
Query 247 GACGATCAGGGGATCAATTTCGACGA-AGGGGCGAGAACTGCACTCGCTTTTGTCACTTT 305
|||||||||| |||||||||||| | ||| || ||||| |||||||||||||| ||| |
Sbjct 259 GACGATCAGGCGATCAATTTCGA-TAGAGGAGCAAGAACCGCACTCGCTTTTGTGACTCT 317
Query 306 GCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGCTTCT 365
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 318 GCGTTCCGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCTAGCGCCGATATGCTTCT 377
Query 366 CCGGCCAGATGAACTGAATCTTGAACTTATCAGATCCGCGAAAGTGTTCCACTATGGATC 425
||||||||||||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 378 CCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTCCACTATGGATC 437
Query 426 AATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTGGCGAA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTGGCGAA 497
Query 486 AGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTTTGGCCATCACC 545
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 498 AGAAGCCGGAGCTCTTCTTTCCTACGACCCAAACCTGAGGGAACCTCTTTGGCCATCCCC 557
Query 546 TGAAGAAGCTAGGACACAGATCATGAGTATCTGGGACAAGGCTGACATCATTAAGGTCAG 605
||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 558 TGATGAAGCTCGGACTCAGATCATGAGTATCTGGGACAAGGCTGATATCATTAAGGTCAG 617
Query 606 TGACGTGGAGCTTGAATTCTTGACCGAAAACAAAACCATGGATGATAAGACAGCAATGTC 665
|||||| |||||||| |||||||||| ||||||||| || |||||| ||| ||| |||||
Sbjct 618 TGACGTCGAGCTTGAGTTCTTGACCGGAAACAAAACGATCGATGATGAGATAGCTATGTC 677
Query 666 TCTATGGCATCCCAACCTT-AAGCTCTTGCTTGTTACTCTCGGCGAAAAGGGATGTAC-T 723
||| |||||||| || || ||||||||||||||||| || || ||||| |||||| | |
Sbjct 678 TCTGTGGCATCCTAAT-TTGAAGCTCTTGCTTGTTACACTTGGGGAAAACGGATGT-CGT 735
Query 724 TATTTCACAAAGAAATTCCATGGATCGGTAGAAACATTCCATGTGGACGCCGTGGATACT 783
|| | ||| ||| | ||||||||||| || ||||| |||||||||||||| |||||||||
Sbjct 736 TACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTGGACGCGGTGGATACT 795
Query 784 ACCGGAGCTGGAGATTCGTTT-GTTGGTGCACTTCTACAAC-AGATTGTTGATGACCAGT 841
|| |||||||| ||||| ||| ||||| || |||||| ||| ||||||| ||||| || |
Sbjct 796 ACGGGAGCTGGTGATTC-TTTCGTTGGCGCGCTTCTA-AACCAGATTGTGGATGATCACT 853
Query 842 CCGTACTCGAGGATGAAGCGAGGTTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGGAG 901
| ||||| ||||| |||| ||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 854 CTGTACTTGAGGAGGAAGAGAGATTGAGAAAAGTGCTAAGATTTGCAAATGCTTGTGGAG 913
Query 902 CCATCACAACAACTAAAAAAGGAGCCATTCCAGCTCTTCCTACAGACAT-TGAAGCTCTC 960
||||||| || |||||||| ||||||||||||||||||||| |||| | ||||||||||
Sbjct 914 CCATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTTCAGAT-TGTGAAGCTCTC 972
Query 961 AGTTTTCTTAA-AGACCAAA-AGAAACGTCAAACCAATCTT 999
||||||||||| |||| ||| |||||||| |||| |||||
Sbjct 973 AGTTTTCTTAAGAGAC-AAATAGAAACGTAAAACTTATCTT 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5