BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06030.1
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470615 jgi|Araly1|470615|fgenesh2_kg.1__569__AT1G06030.1 1509 0.0
Ahg311681 jgi|Araly1|311681|fgenesh1_pm.C_scaffold_1000461 1317 0.0
Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1 893 0.0
> Ahg470615 jgi|Araly1|470615|fgenesh2_kg.1__569__AT1G06030.1
Length=1012
Score = 1509 bits (817), Expect = 0.0
Identities = 939/998 (94%), Gaps = 7/998 (1%)
Strand=Plus/Plus
Query 8 CATCCAACGGCGATAATAAAGGTCTCGTCGTTAGCTTCGGCGAGATGCTCATTGACTTCG 67
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 20 CATCCACCGGCG---ATAAAGGTCTCGTCGTGAGCTTCGGCGAGATGCTCATTGACTTCG 76
Query 68 TGCCCACGGAATCCGGCGTCTCCCTCTCTGAATCCTCTGGATTTCTCAAAGCTCCTGGTG 127
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 77 TCCCCACGGAATCCGGCGTCTCCCTCTCTGAATCCTCCGGATTTCTCAAAGCTCCCGGTG 136
Query 128 GTGCTCCAGCAAACGTCGCTATCGCTGTTTCCCGTCTCGGAGGTCGCGCCGCCTTCGTCG 187
||||||| || |||||||| ||||| || || ||||||||||||||||| |||||||| |
Sbjct 137 GTGCTCCGGCCAACGTCGCCATCGCCGTCTCACGTCTCGGAGGTCGCGCTGCCTTCGTAG 196
Query 188 GAAAACTCGGGGACGATGAGTTT-GGCCATATGCTTGCCGGAATCTTGAGAAAGAACGAT 246
||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 197 GAAAACTCGGGGATGATGA-TTTCGGCCATATGCTTGCCGGAATCTTGAGAAAGAACGGT 255
Query 247 GTCGACGATCAGGGGATCAATTTCGATAAAGGAGCAAGAACCGCACTCGCTTTTGTGACT 306
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 256 GTCGACGATCAGGCGATCAATTTCGATAGAGGAGCAAGAACCGCACTCGCTTTTGTGACT 315
Query 307 CTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGCTT 366
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 316 CTGCGTTCCGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCTAGCGCCGATATGCTT 375
Query 367 CTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTTCACTATGGA 426
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 376 CTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTCCACTATGGA 435
Query 427 TCAATAAGTTTGATTACAGAGCCATGTAGATCAGCTCACATGAAGGCGATGGAGGTGGCG 486
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 436 TCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTGGCG 495
Query 487 AAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTGTGGCCATCC 546
|||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 496 AAAGAAGCCGGAGCTCTTCTTTCCTACGACCCAAACCTGAGGGAACCTCTTTGGCCATCC 555
Query 547 CCTGAAGAAGCTAGGAAACAGATCATGAGTATCTGGGACAAGGCTGACATTATTAAGGTC 606
||||| |||||| ||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 556 CCTGATGAAGCTCGGACTCAGATCATGAGTATCTGGGACAAGGCTGATATCATTAAGGTC 615
Query 607 AGTGACGTCGAGCTTGAGTTCTTGACAGGAAACAAAACGATTGATGATGAGACAGCTATG 666
|||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct 616 AGTGACGTCGAGCTTGAGTTCTTGACCGGAAACAAAACGATCGATGATGAGATAGCTATG 675
Query 667 TCTCTGTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGCGAAAATGGATGTCGT 726
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 676 TCTCTGTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGGGAAAACGGATGTCGT 735
Query 727 TACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTTGACGCTGTGGATACT 786
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 736 TACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTGGACGCGGTGGATACT 795
Query 787 ACTGGAGCTGGTGATTCTTTTGTTGGCGCGCTTCTAAACCAGATTGTTGATGATCAATCT 846
|| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 796 ACGGGAGCTGGTGATTCTTTCGTTGGCGCGCTTCTAAACCAGATTGTGGATGATCACTCT 855
Query 847 GTACTCGAGGAGGAAGAGAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGGAGCA 906
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 856 GTACTTGAGGAGGAAGAGAGATTGAGAAAAGTGCTAAGATTTGCAAATGCTTGTGGAGCC 915
Query 907 ATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTACAGATTGTGAAGCTCTCAGT 966
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 916 ATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTTCAGATTGTGAAGCTCTCAGT 975
Query 967 TTTCTTAAGATACAAGTAGAATA-GTAAAACTTCTCTT 1003
|||||||||| |||| ||||| | ||||||||| ||||
Sbjct 976 TTTCTTAAGAGACAAATAGAA-ACGTAAAACTTATCTT 1012
> Ahg311681 jgi|Araly1|311681|fgenesh1_pm.C_scaffold_1000461
Length=1038
Score = 1317 bits (713), Expect = 0.0
Identities = 908/1002 (91%), Gaps = 14/1002 (1%)
Strand=Plus/Plus
Query 7 TCATCCAACGGCGATAATAAAGGTCTCGTCGTTAGCTTCGGCGAGATGCTCATTGACTTC 66
||||||| ||||| | ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 7 TCATCCACCGGCG---AGAAAGGTCTCATCGTGAGCTTCGGCGAGATGCTCATTGACTTC 63
Query 67 GTGCCC-ACGGAATCCGGCGTCTCCCTCTCTGAATCCTCTGGATTTCTCAAAGCTCCTGG 125
|| ||| || | |||||||||||||||||| |||||| | ||||||||||| ||||| ||
Sbjct 64 GT-CCCTACTGTATCCGGCGTCTCCCTCTCCGAATCCCCCGGATTTCTCAAGGCTCCGGG 122
Query 126 TGGTGCTCCAGCAAACGTCGCTATCGCTGTTTCCCGTCTCGGAGGTCGCGCCGCCTTCGT 185
|||||||| || |||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct 123 CGGTGCTCCGGCCAACGTCGCCATCGCTGTCTCACGTCTCGGAGGTCGTGCCGCCTTCGT 182
Query 186 CGGAAAACTCGGGGACGATGAGTTT-GGCCATATGCTTGCCGGAATCTTGAGAAAGAACG 244
|| || ||||| |||||||| ||| || |||||||| ||||||||||||||||||||||
Sbjct 183 AGGGAAGCTCGGAGACGATGA-TTTCGGTCATATGCTCGCCGGAATCTTGAGAAAGAACG 241
Query 245 ATGTCGACGATCAGGGGATCAATTTCGATAAAGGAGCAAGAACCGCACTCGCTTTTGTGA 304
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 242 GTGTCGACGATCAGGGGATCAATTTCGACAAAGGAGCAAGAACCGCACTCGCTTTTGTGA 301
Query 305 CTCTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGC 364
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CTCTGCGTTCCGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGC 361
Query 365 TTCTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTTCACTATG 424
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 362 TTCTCCGGCCAGACGAACTCAACCTCGAACTAATCAGATCCGCGAAGGTGTTCCACTATG 421
Query 425 GATCAATAAGTTTGATTACAGAGCCATGTAGATCAGCTCACATGAAGGCGATGGAGGTGG 484
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 422 GATCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTGG 481
Query 485 CGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTGTGGCCAT 544
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 482 CGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTGAGGGAACCTCTTTGGCCAT 541
Query 545 CCCCTGAAGAAGCTAGGAAACAGATCATGAGTATCTGGGACAAGGCTGACATTATTAAGG 604
|||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 542 CCCCTGAAGAAGCTCGGACTCAGATCATGAGTATCTGGGACAAGGCTGACATCATTAAGG 601
Query 605 TCAGTGACGTCGAGCTTGAGTTCTTGACAGGAAACAAAACGATTGATGATGAGACAGCTA 664
|||||||||| ||||||||||||||||| | |||||||||||| |||||| |||||||||
Sbjct 602 TCAGTGACGTTGAGCTTGAGTTCTTGACCGAAAACAAAACGATGGATGATAAGACAGCTA 661
Query 665 TGTCTCTGTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGCGAAAATGGATGT- 723
||||||| |||||||| ||| ||||||||||||||||||| || |||||||| ||||||
Sbjct 662 TGTCTCTATGGCATCCCAATCTGAAGCTCTTGCTTGTTACTCTCGGCGAAAAGGGATGTA 721
Query 724 CGTTACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTTGACGCTG-TGGA 782
| ||| | ||| ||| ||||||||||||| |||||||| |||| ||| ||||| | | ||
Sbjct 722 C-TTATTTCACAAAGAATTTCCATGGATCAGTTGAAACATTCCTTGTGGACGC-GATAGA 779
Query 783 TACTACTGGAGCTGGTGATTCTTTTGTTGGCGCGCTTCTAAACCAGATTGTTGATGATCA 842
|||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||
Sbjct 780 TACTACCGGAGCTGGAGATTCGTTTGTTGGTGCGCTTCTAAAACAGATTGTTGATGACCA 839
Query 843 ATCTGTACTCGAGGAGGAAGAGAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGG 902
||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 840 ATCCGTACTCGAGGATGAAGCTAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGG 899
Query 903 AGCAATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTACAGATTGTGAAGCTCT 962
||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 900 AGCCATCACGACAACTAAAAAGGGAGCCATACCAGCTCTTCCTACAGACAGTGAAGCTCT 959
Query 963 CAGTTTTCTTAAGATACAAGTAGAATA-GTAAAACTTCTCTT 1003
||||||||||| | |||| |||| | || |||||| ||||
Sbjct 960 TAGTTTTCTTAA-AGACAAAAAGAA-ACGTCAAACTTATCTT 999
> Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1
Length=1239
Score = 893 bits (483), Expect = 0.0
Identities = 821/981 (84%), Gaps = 35/981 (4%)
Strand=Plus/Plus
Query 8 CATCCAACGGCGATAATAAAGGTCTCG-TCGTTAGCTTCGGCGAGATGCTCATTGACTTC 66
|||||||| | | | ||||||| || | |||||||||||||||||||||| || || |||
Sbjct 58 CATCCAAC-G-G-TGATAAAGGACT-GATCGTTAGCTTCGGCGAGATGCTAATCGATTTC 113
Query 67 GTGCCC-ACGGAATCCGGCGTCTCCCTCTCTGAATCCT-CTGGATTTCTCAAAGCTCCTG 124
|| ||| || |||||||||||||| ||| | ||| || ||||||| ||||||||||| |
Sbjct 114 GT-CCCAACCGAATCCGGCGTCTCACTCGCCGAA-GCTCCTGGATTCCTCAAAGCTCCAG 171
Query 125 GTGGTGCTCCAGCAAACGTCGCTATCGCTGTTTCCCGTCTCGGAGGTCGCGCCGCCTTCG 184
| |||||||| ||||||||||| ||||| ||||| |||||||| || || |||||||||
Sbjct 172 GCGGTGCTCCCGCAAACGTCGCAATCGCCGTTTCTCGTCTCGGTGGACGATCCGCCTTCG 231
Query 185 TCGGAAAACTCGGGGACGATGAGTTTGGCCATATGCTT-GC-CGGAATCTTGAGAAAGAA 242
|||| ||||| || ||||| ||||| || |||||| || || ||| || |||| |||||
Sbjct 232 TCGGGAAACTTGGAGACGACGAGTTCGGTCATATG-TTGGCTGGGATTC-TGAGGAAGAA 289
Query 243 CGATGTCGACGATCAGGGGATCAATTTCGATAAAGGAGCAAGAACCGCACTCGCTTTTGT 302
|| |||||| ||||||||||| || ||||||| |||||| ||||| || || ||||| ||
Sbjct 290 CGGTGTCGATGATCAGGGGATTAACTTCGATACAGGAGCTAGAACAGCTCTAGCTTTCGT 349
Query 303 GAC-TCTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATA 361
|| | | ||| |||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 350 TACGT-TACGTGCTGATGGAGATCGTGAGTTTATGTTTTACCGGAATCCTAGCGCCGATA 408
Query 362 TGCTTCTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTTCACT 421
|||||||||| || ||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 409 TGCTTCTCCGTCCTGATGAGCTCAATCTCGACCTCATCAGATCCGCGAAAGTGTTTCACT 468
Query 422 ATGGATCAATAAGTTTGATTACAG-AGCCATGTAGATCAGCTCACATGAAGGCGATGGAG 480
||||||||||||||||||| | | |||| ||||| |||||||| ||||||| |||||
Sbjct 469 ATGGATCAATAAGTTTGAT-AGTGGAGCCGTGTAGGTCAGCTCATTTGAAGGCCATGGAA 527
Query 481 GTGGCGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTGTGG 540
||||||||||| || ||||||||||||||||| || |||||||| ||||||||| |||||
Sbjct 528 GTGGCGAAAGAGGCCGGAGCTCTTCTTTCCTATGACCCAAACCTTAGGGAACCTTTGTGG 587
Query 541 CCATCCCCTGAAGAAGCTAGGAAACAGATCATGAGTATCTGGGACAAGGCTGACATTATT 600
||||| |||||||| | || |||||||||||| ||||||||||| ||||| || ||
Sbjct 588 CCATCAAAGGAAGAAGCCAAGACACAGATCATGAGCATCTGGGACAAAGCTGAGATCATC 647
Query 601 AAGGTCAGTGACGTCGAGCTTGAGTT-CTTGACAGGAAACAA-AACGATTGATGATGAGA 658
||||| || || || ||||||||||| || || |||| ||| || || ||||||||||
Sbjct 648 AAGGTGAGCGATGTTGAGCTTGAGTTTCTA-ACTGGAAGCAACAAA-ATCGATGATGAGA 705
Query 659 CAGCTAT-GTCTCT-GTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGCGAAAA 716
| || || ||| || ||||||||| || |||||||||||||||||||| || || |||||
Sbjct 706 CCGC-ATTGTC-CTTGTGGCATCCCAACTTGAAGCTCTTGCTTGTTACTCTCGGTGAAAA 763
Query 717 TGGATGTCGTTACTACACTAAGG-ATTTCCATGGATCTGTTGAAACTTTCCATGTTGA-C 774
|| ||||| || ||||| ||| ||| | | ||||||||||| |||||||||| || |
Sbjct 764 GGGCTGTCGGTATTACACCAAGACATT-CAAAGGATCTGTTGACCCTTTCCATGT-GAAC 821
Query 775 GCTGTGGATACTACTGGAGCTGGTGATTCTTTTGTTGGCGCGCTTCTAAACCAGATTGTT 834
||||||||||| || |||||||| ||||| ||||| ||||| || ||||||||||||||
Sbjct 822 GCTGTGGATACAACCGGAGCTGGAGATTCCTTTGTCGGCGCTCTCCTAAACCAGATTGTC 881
Query 835 GATGATCAATCTGTACTCGAGGAGGAAGAGAGATTGAGAAAAGTGCTGAGATTTGCAAAC 894
||||||| ||| || |||||||| ||||| | ||||||||||||||||||||| |||||
Sbjct 882 GATGATCGATCCGTTCTCGAGGACGAAGAAAAATTGAGAAAAGTGCTGAGATTCGCAAAT 941
Query 895 GCTTGTGGAGCAATCACGACGACTAA-AAAGGGAGCCATTCCAGCTCTTCC-TACAGATT 952
||||||||||||||||| ||||| || ||||| |||||||||||||||||| | |||||
Sbjct 942 GCTTGTGGAGCAATCACCACGACCAAGAAAGG-AGCCATTCCAGCTCTTCCCT-CAGAT- 998
Query 953 G-TGAAGCTCTCAGTTTTCTT 972
| ||||| || ||| ||||||
Sbjct 999 GCTGAAGTTCGCAGCTTTCTT 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37970425332
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5