BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06030.1 Length=1021 Score E Sequences producing significant alignments: (Bits) Value Ahg470615 jgi|Araly1|470615|fgenesh2_kg.1__569__AT1G06030.1 1509 0.0 Ahg311681 jgi|Araly1|311681|fgenesh1_pm.C_scaffold_1000461 1317 0.0 Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1 893 0.0 > Ahg470615 jgi|Araly1|470615|fgenesh2_kg.1__569__AT1G06030.1 Length=1012 Score = 1509 bits (817), Expect = 0.0 Identities = 939/998 (94%), Gaps = 7/998 (1%) Strand=Plus/Plus Query 8 CATCCAACGGCGATAATAAAGGTCTCGTCGTTAGCTTCGGCGAGATGCTCATTGACTTCG 67 |||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 20 CATCCACCGGCG---ATAAAGGTCTCGTCGTGAGCTTCGGCGAGATGCTCATTGACTTCG 76 Query 68 TGCCCACGGAATCCGGCGTCTCCCTCTCTGAATCCTCTGGATTTCTCAAAGCTCCTGGTG 127 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 77 TCCCCACGGAATCCGGCGTCTCCCTCTCTGAATCCTCCGGATTTCTCAAAGCTCCCGGTG 136 Query 128 GTGCTCCAGCAAACGTCGCTATCGCTGTTTCCCGTCTCGGAGGTCGCGCCGCCTTCGTCG 187 ||||||| || |||||||| ||||| || || ||||||||||||||||| |||||||| | Sbjct 137 GTGCTCCGGCCAACGTCGCCATCGCCGTCTCACGTCTCGGAGGTCGCGCTGCCTTCGTAG 196 Query 188 GAAAACTCGGGGACGATGAGTTT-GGCCATATGCTTGCCGGAATCTTGAGAAAGAACGAT 246 ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| | Sbjct 197 GAAAACTCGGGGATGATGA-TTTCGGCCATATGCTTGCCGGAATCTTGAGAAAGAACGGT 255 Query 247 GTCGACGATCAGGGGATCAATTTCGATAAAGGAGCAAGAACCGCACTCGCTTTTGTGACT 306 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 256 GTCGACGATCAGGCGATCAATTTCGATAGAGGAGCAAGAACCGCACTCGCTTTTGTGACT 315 Query 307 CTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGCTT 366 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 316 CTGCGTTCCGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCTAGCGCCGATATGCTT 375 Query 367 CTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTTCACTATGGA 426 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 376 CTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTCCACTATGGA 435 Query 427 TCAATAAGTTTGATTACAGAGCCATGTAGATCAGCTCACATGAAGGCGATGGAGGTGGCG 486 |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 436 TCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTGGCG 495 Query 487 AAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTGTGGCCATCC 546 |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||| Sbjct 496 AAAGAAGCCGGAGCTCTTCTTTCCTACGACCCAAACCTGAGGGAACCTCTTTGGCCATCC 555 Query 547 CCTGAAGAAGCTAGGAAACAGATCATGAGTATCTGGGACAAGGCTGACATTATTAAGGTC 606 ||||| |||||| ||| ||||||||||||||||||||||||||||| || ||||||||| Sbjct 556 CCTGATGAAGCTCGGACTCAGATCATGAGTATCTGGGACAAGGCTGATATCATTAAGGTC 615 Query 607 AGTGACGTCGAGCTTGAGTTCTTGACAGGAAACAAAACGATTGATGATGAGACAGCTATG 666 |||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||| Sbjct 616 AGTGACGTCGAGCTTGAGTTCTTGACCGGAAACAAAACGATCGATGATGAGATAGCTATG 675 Query 667 TCTCTGTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGCGAAAATGGATGTCGT 726 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 676 TCTCTGTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGGGAAAACGGATGTCGT 735 Query 727 TACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTTGACGCTGTGGATACT 786 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 736 TACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTGGACGCGGTGGATACT 795 Query 787 ACTGGAGCTGGTGATTCTTTTGTTGGCGCGCTTCTAAACCAGATTGTTGATGATCAATCT 846 || ||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| Sbjct 796 ACGGGAGCTGGTGATTCTTTCGTTGGCGCGCTTCTAAACCAGATTGTGGATGATCACTCT 855 Query 847 GTACTCGAGGAGGAAGAGAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGGAGCA 906 ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 856 GTACTTGAGGAGGAAGAGAGATTGAGAAAAGTGCTAAGATTTGCAAATGCTTGTGGAGCC 915 Query 907 ATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTACAGATTGTGAAGCTCTCAGT 966 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 916 ATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTTCAGATTGTGAAGCTCTCAGT 975 Query 967 TTTCTTAAGATACAAGTAGAATA-GTAAAACTTCTCTT 1003 |||||||||| |||| ||||| | ||||||||| |||| Sbjct 976 TTTCTTAAGAGACAAATAGAA-ACGTAAAACTTATCTT 1012 > Ahg311681 jgi|Araly1|311681|fgenesh1_pm.C_scaffold_1000461 Length=1038 Score = 1317 bits (713), Expect = 0.0 Identities = 908/1002 (91%), Gaps = 14/1002 (1%) Strand=Plus/Plus Query 7 TCATCCAACGGCGATAATAAAGGTCTCGTCGTTAGCTTCGGCGAGATGCTCATTGACTTC 66 ||||||| ||||| | ||||||||| |||| ||||||||||||||||||||||||||| Sbjct 7 TCATCCACCGGCG---AGAAAGGTCTCATCGTGAGCTTCGGCGAGATGCTCATTGACTTC 63 Query 67 GTGCCC-ACGGAATCCGGCGTCTCCCTCTCTGAATCCTCTGGATTTCTCAAAGCTCCTGG 125 || ||| || | |||||||||||||||||| |||||| | ||||||||||| ||||| || Sbjct 64 GT-CCCTACTGTATCCGGCGTCTCCCTCTCCGAATCCCCCGGATTTCTCAAGGCTCCGGG 122 Query 126 TGGTGCTCCAGCAAACGTCGCTATCGCTGTTTCCCGTCTCGGAGGTCGCGCCGCCTTCGT 185 |||||||| || |||||||| |||||||| || |||||||||||||| ||||||||||| Sbjct 123 CGGTGCTCCGGCCAACGTCGCCATCGCTGTCTCACGTCTCGGAGGTCGTGCCGCCTTCGT 182 Query 186 CGGAAAACTCGGGGACGATGAGTTT-GGCCATATGCTTGCCGGAATCTTGAGAAAGAACG 244 || || ||||| |||||||| ||| || |||||||| |||||||||||||||||||||| Sbjct 183 AGGGAAGCTCGGAGACGATGA-TTTCGGTCATATGCTCGCCGGAATCTTGAGAAAGAACG 241 Query 245 ATGTCGACGATCAGGGGATCAATTTCGATAAAGGAGCAAGAACCGCACTCGCTTTTGTGA 304 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 242 GTGTCGACGATCAGGGGATCAATTTCGACAAAGGAGCAAGAACCGCACTCGCTTTTGTGA 301 Query 305 CTCTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGC 364 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 CTCTGCGTTCCGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATATGC 361 Query 365 TTCTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTTCACTATG 424 ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 362 TTCTCCGGCCAGACGAACTCAACCTCGAACTAATCAGATCCGCGAAGGTGTTCCACTATG 421 Query 425 GATCAATAAGTTTGATTACAGAGCCATGTAGATCAGCTCACATGAAGGCGATGGAGGTGG 484 |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| Sbjct 422 GATCAATAAGTTTGATAACAGAGCCATGTAGATCAGCTCACATGAAGGCAATGGAAGTGG 481 Query 485 CGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTGTGGCCAT 544 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 482 CGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTGAGGGAACCTCTTTGGCCAT 541 Query 545 CCCCTGAAGAAGCTAGGAAACAGATCATGAGTATCTGGGACAAGGCTGACATTATTAAGG 604 |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 542 CCCCTGAAGAAGCTCGGACTCAGATCATGAGTATCTGGGACAAGGCTGACATCATTAAGG 601 Query 605 TCAGTGACGTCGAGCTTGAGTTCTTGACAGGAAACAAAACGATTGATGATGAGACAGCTA 664 |||||||||| ||||||||||||||||| | |||||||||||| |||||| ||||||||| Sbjct 602 TCAGTGACGTTGAGCTTGAGTTCTTGACCGAAAACAAAACGATGGATGATAAGACAGCTA 661 Query 665 TGTCTCTGTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGCGAAAATGGATGT- 723 ||||||| |||||||| ||| ||||||||||||||||||| || |||||||| |||||| Sbjct 662 TGTCTCTATGGCATCCCAATCTGAAGCTCTTGCTTGTTACTCTCGGCGAAAAGGGATGTA 721 Query 724 CGTTACTACACTAAGGATTTCCATGGATCTGTTGAAACTTTCCATGTTGACGCTG-TGGA 782 | ||| | ||| ||| ||||||||||||| |||||||| |||| ||| ||||| | | || Sbjct 722 C-TTATTTCACAAAGAATTTCCATGGATCAGTTGAAACATTCCTTGTGGACGC-GATAGA 779 Query 783 TACTACTGGAGCTGGTGATTCTTTTGTTGGCGCGCTTCTAAACCAGATTGTTGATGATCA 842 |||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||| || Sbjct 780 TACTACCGGAGCTGGAGATTCGTTTGTTGGTGCGCTTCTAAAACAGATTGTTGATGACCA 839 Query 843 ATCTGTACTCGAGGAGGAAGAGAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGG 902 ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 840 ATCCGTACTCGAGGATGAAGCTAGATTGAGAAAAGTGCTGAGATTTGCAAACGCTTGTGG 899 Query 903 AGCAATCACGACGACTAAAAAGGGAGCCATTCCAGCTCTTCCTACAGATTGTGAAGCTCT 962 ||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 900 AGCCATCACGACAACTAAAAAGGGAGCCATACCAGCTCTTCCTACAGACAGTGAAGCTCT 959 Query 963 CAGTTTTCTTAAGATACAAGTAGAATA-GTAAAACTTCTCTT 1003 ||||||||||| | |||| |||| | || |||||| |||| Sbjct 960 TAGTTTTCTTAA-AGACAAAAAGAA-ACGTCAAACTTATCTT 999 > Ahg482071 jgi|Araly1|482071|fgenesh2_kg.4__1131__AT2G31390.1 Length=1239 Score = 893 bits (483), Expect = 0.0 Identities = 821/981 (84%), Gaps = 35/981 (4%) Strand=Plus/Plus Query 8 CATCCAACGGCGATAATAAAGGTCTCG-TCGTTAGCTTCGGCGAGATGCTCATTGACTTC 66 |||||||| | | | ||||||| || | |||||||||||||||||||||| || || ||| Sbjct 58 CATCCAAC-G-G-TGATAAAGGACT-GATCGTTAGCTTCGGCGAGATGCTAATCGATTTC 113 Query 67 GTGCCC-ACGGAATCCGGCGTCTCCCTCTCTGAATCCT-CTGGATTTCTCAAAGCTCCTG 124 || ||| || |||||||||||||| ||| | ||| || ||||||| ||||||||||| | Sbjct 114 GT-CCCAACCGAATCCGGCGTCTCACTCGCCGAA-GCTCCTGGATTCCTCAAAGCTCCAG 171 Query 125 GTGGTGCTCCAGCAAACGTCGCTATCGCTGTTTCCCGTCTCGGAGGTCGCGCCGCCTTCG 184 | |||||||| ||||||||||| ||||| ||||| |||||||| || || ||||||||| Sbjct 172 GCGGTGCTCCCGCAAACGTCGCAATCGCCGTTTCTCGTCTCGGTGGACGATCCGCCTTCG 231 Query 185 TCGGAAAACTCGGGGACGATGAGTTTGGCCATATGCTT-GC-CGGAATCTTGAGAAAGAA 242 |||| ||||| || ||||| ||||| || |||||| || || ||| || |||| ||||| Sbjct 232 TCGGGAAACTTGGAGACGACGAGTTCGGTCATATG-TTGGCTGGGATTC-TGAGGAAGAA 289 Query 243 CGATGTCGACGATCAGGGGATCAATTTCGATAAAGGAGCAAGAACCGCACTCGCTTTTGT 302 || |||||| ||||||||||| || ||||||| |||||| ||||| || || ||||| || Sbjct 290 CGGTGTCGATGATCAGGGGATTAACTTCGATACAGGAGCTAGAACAGCTCTAGCTTTCGT 349 Query 303 GAC-TCTGCGTTCTGACGGAGAACGAGAGTTTATGTTTTACCGGAATCCCAGCGCCGATA 361 || | | ||| |||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct 350 TACGT-TACGTGCTGATGGAGATCGTGAGTTTATGTTTTACCGGAATCCTAGCGCCGATA 408 Query 362 TGCTTCTCCGGCCAGATGAACTCAACCTCGAACTAATCAGATCCGCGAAAGTGTTTCACT 421 |||||||||| || ||||| ||||| ||||| || ||||||||||||||||||||||||| Sbjct 409 TGCTTCTCCGTCCTGATGAGCTCAATCTCGACCTCATCAGATCCGCGAAAGTGTTTCACT 468 Query 422 ATGGATCAATAAGTTTGATTACAG-AGCCATGTAGATCAGCTCACATGAAGGCGATGGAG 480 ||||||||||||||||||| | | |||| ||||| |||||||| ||||||| ||||| Sbjct 469 ATGGATCAATAAGTTTGAT-AGTGGAGCCGTGTAGGTCAGCTCATTTGAAGGCCATGGAA 527 Query 481 GTGGCGAAAGAAGCTGGAGCTCTTCTTTCCTACGATCCAAACCTCAGGGAACCTCTGTGG 540 ||||||||||| || ||||||||||||||||| || |||||||| ||||||||| ||||| Sbjct 528 GTGGCGAAAGAGGCCGGAGCTCTTCTTTCCTATGACCCAAACCTTAGGGAACCTTTGTGG 587 Query 541 CCATCCCCTGAAGAAGCTAGGAAACAGATCATGAGTATCTGGGACAAGGCTGACATTATT 600 ||||| |||||||| | || |||||||||||| ||||||||||| ||||| || || Sbjct 588 CCATCAAAGGAAGAAGCCAAGACACAGATCATGAGCATCTGGGACAAAGCTGAGATCATC 647 Query 601 AAGGTCAGTGACGTCGAGCTTGAGTT-CTTGACAGGAAACAA-AACGATTGATGATGAGA 658 ||||| || || || ||||||||||| || || |||| ||| || || |||||||||| Sbjct 648 AAGGTGAGCGATGTTGAGCTTGAGTTTCTA-ACTGGAAGCAACAAA-ATCGATGATGAGA 705 Query 659 CAGCTAT-GTCTCT-GTGGCATCCTAATTTGAAGCTCTTGCTTGTTACACTTGGCGAAAA 716 | || || ||| || ||||||||| || |||||||||||||||||||| || || ||||| Sbjct 706 CCGC-ATTGTC-CTTGTGGCATCCCAACTTGAAGCTCTTGCTTGTTACTCTCGGTGAAAA 763 Query 717 TGGATGTCGTTACTACACTAAGG-ATTTCCATGGATCTGTTGAAACTTTCCATGTTGA-C 774 || ||||| || ||||| ||| ||| | | ||||||||||| |||||||||| || | Sbjct 764 GGGCTGTCGGTATTACACCAAGACATT-CAAAGGATCTGTTGACCCTTTCCATGT-GAAC 821 Query 775 GCTGTGGATACTACTGGAGCTGGTGATTCTTTTGTTGGCGCGCTTCTAAACCAGATTGTT 834 ||||||||||| || |||||||| ||||| ||||| ||||| || |||||||||||||| Sbjct 822 GCTGTGGATACAACCGGAGCTGGAGATTCCTTTGTCGGCGCTCTCCTAAACCAGATTGTC 881 Query 835 GATGATCAATCTGTACTCGAGGAGGAAGAGAGATTGAGAAAAGTGCTGAGATTTGCAAAC 894 ||||||| ||| || |||||||| ||||| | ||||||||||||||||||||| ||||| Sbjct 882 GATGATCGATCCGTTCTCGAGGACGAAGAAAAATTGAGAAAAGTGCTGAGATTCGCAAAT 941 Query 895 GCTTGTGGAGCAATCACGACGACTAA-AAAGGGAGCCATTCCAGCTCTTCC-TACAGATT 952 ||||||||||||||||| ||||| || ||||| |||||||||||||||||| | ||||| Sbjct 942 GCTTGTGGAGCAATCACCACGACCAAGAAAGG-AGCCATTCCAGCTCTTCCCT-CAGAT- 998 Query 953 G-TGAAGCTCTCAGTTTTCTT 972 | ||||| || ||| |||||| Sbjct 999 GCTGAAGTTCGCAGCTTTCTT 1019 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37970425332 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5