BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06050.1
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919311 jgi|Araly1|919311|scaffold_100592.1 1435 0.0
> Ahg919311 jgi|Araly1|919311|scaffold_100592.1
Length=983
Score = 1435 bits (777), Expect = 0.0
Identities = 918/983 (93%), Gaps = 22/983 (2%)
Strand=Plus/Plus
Query 217 AGGTTTTCGCAAGATATGGCTGGCTCTGTTGGTGAGGAAACTGAGCCAGAATGGATTAAG 276
|||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 7 AGGTTTTCACAAGATATGGGTGGCTCTGTTGGTGAAGAAACTGAGCCAGAATGGATTAAG 66
Query 277 AGAGTGAAATTAGAGGGAGCTGTTCCATGTCTTAAGCCAGACGACAACTGCAAAAATGGT 336
||||||||| ||||||| |||||||| |||||| |||| | ||||||||| ||||||||
Sbjct 67 AGAGTGAAACTAGAGGGTGCTGTTCCGTGTCTTCAGCC--A-GACAACTGCCAAAATGGT 123
Query 337 TGGACGACGCCATCTCCTGACACATTTATGGTTAGAGGACCAAAGTATTTCTCTGACAAA 396
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TGGACTACGCCATCTCCTGACACATTTATGGTTAGAGGACCAAAGTATTTCTCTGACAAT 183
Query 397 GTT-AAGATACCTGCTGGTGATTTCCTTCTAAAGCCTCTGGGTTTTGATTGGATTAAAGG 455
||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 184 GTTAAAG-TTCCTGCTGGTGATTTCCTTCTAAAGCCTCTGGGTTTTGATTGGATCAAAGG 242
Query 456 TCCTAAAAAGCTTTCTGAGATCCTGAGTTATCCAAGCAGCCGAATCAGGAAAGTTATCGA 515
||||| |||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 243 TCCTACAAAGCTTTCTGAGATCCTGAGTTACCCGAGCAGCAGAATCAGGAAAGTTATCGA 302
Query 516 TGAGGAGTTTCAAAAAGATGGAACTAAGCCTTTTGTCTGGGCATTCAATCTCCAGCTTCC 575
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 303 TGAGGAGTTTCAAGCAGATGGAACTAAGCCTTTTGTATGGGCATTCAATCTCCAGCTTCC 362
Query 576 TCACAAAGACAATTACAGTGCTGTGGCTTACTTTGTTACCACAGAGCCTATCCTTGAAGG 635
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 363 CCACAAAGACAATTACAGTGCTGTGGCTTACTTTGTTGCCACAGAGCCTATCCTTGAAGG 422
Query 636 CTCCCTGATGGATCGGTTTTTGAAAGGAGATGATGGGTTCAAGAAATCGAGGCTTAAACT 695
||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct 423 CTCCCTGATGGATCGGTTTCTGAAAGGAGATGATGTGTTCAAGAAATCAAGGCTTAAACT 482
Query 696 GATTGCAAACATTGTCAAAGGCCCTTGGATTGTTAGAAAAGCTGTTGGAGAGCAAGCGAT 755
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 483 GATTGCAAACATTGTCAAAGGCCCTTGGATTGTAAGAAAAGCTGTTGGAGAGCAAGCAAT 542
Query 756 CTGTGTGATTGGACGTGCACTCTCTTGCAAATATGTTTCAGGGGAAAACTTTGTGGAGAT 815
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 543 ATGTGTGATTGGACGTGCACTGTCTTGCAAATATGTTTCAGGAGAAAACTTTGTGGAGAT 602
Query 816 TGATGTCGATATTGGTTCTTCAATGGTCGCTAGTGCCATTGTTCATCTCGCATTTGGCTA 875
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 603 TGATGTTGATATCGGTTCTTCAATGGTCGCTAGTGCCATTGTTCATCTCGCATTTGGTTA 662
Query 876 CGTTACTACATTGACAGTTGATCTTGCGTTCCTCATTGAGAGTCAGACCGAAGCAGAGCT 935
||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 663 CGTCACAACATTGACCGTTGATCTTGCGTTCCTCATTGAGAGTCAGACGGAAGCAGAGCT 722
Query 936 TCCAGAAAAGCTACTAGGAGCTGTGAGATTCTCTGAGCTGCAGACCGAGTCAGCCACA-T 994
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 723 TCCAGAAAAGCTACTAGGAGCTGTGAGATTCTCTGAGCTGCAGACCGAGTCAGCCA-AGT 781
Query 995 CTATCGAACTGTCCTCAAGCACCAGTAATGACCAGTGGGATCAAACTACCTCAGAGCGGT 1054
|||||||||| | ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 782 TTATCGAACTG-----A-GCACCAGTAATGAGCGGTGGGATCAAACTACCTCAGAGCGGT 835
Query 1055 CGAGCTGGTGGAAATCGATTGGAAATGGATTCTCTAATCTGCTTAATCAAGATACGGCCA 1114
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 836 CGAGCTGGTGGAAATCGATTGGTAATGGATTCTCTAATCTGCTTAACCAAGATACAGCCA 895
Query 1115 ACATGAACAATACTTCTCATGGGGACATCCAGAA---G--G-ATGAACATGTACA---GA 1165
||||||||||||||||||||||||| |||||||| | | ||||||||||||| ||
Sbjct 896 ACATGAACAATACTTCTCATGGGGAAATCCAGAACCAGAAGGATGAACATGTACAACAGA 955
Query 1166 AGCAGTAAGTGTTTTGGGAGTTA 1188
|||||||||||||||||||||||
Sbjct 956 AGCAGTAAGTGTTTTGGGAGTTA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48377981673
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5