BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06060.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470618 jgi|Araly1|470618|fgenesh2_kg.1__572__AT1G06060.1 1482 0.0
> Ahg470618 jgi|Araly1|470618|fgenesh2_kg.1__572__AT1G06060.1
Length=1085
Score = 1482 bits (802), Expect = 0.0
Identities = 997/1087 (92%), Gaps = 30/1087 (3%)
Strand=Plus/Plus
Query 29 GACTCACACCTCATCGAAATTTGGCCATCTCATCTGGCTTCTTCCCCTCCGGCGTTGGAT 88
|||||| |||||| |||| |||||||||||||||||||||||||||||||||| |
Sbjct 20 GACTCAAACCTCACCGAATTTTGGCCATCTCATCTGGCTTCTTCCCCTCCGGC----G-- 73
Query 89 AACCATCATTACTTCTCGCGCCGGCTTCGAGTGGAACAATATGGATCCTCGTCAATTCGA 148
||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 74 --------TTACTTCTCGCACCGGCGTCTAGTGGAACAATATGGATCCTCGTCAATTCGC 125
Query 149 ACACACCGTTGTTGCTGATAATGATATTCACAGCATTGTTATGTCATATCTTCTGCACAA 208
|||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 126 ACACACCGTTGTTGATGATAATGACATTCACAGCATTGTAATGTCATATCTTCTGCACAA 185
Query 209 CTGCTTCAACGAAACTGCGGACTCACTTGCTTCTTCCACTGGAGTTAAGCAGCCTGCAAT 268
||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 186 CTGCTTCAACGAAACTGCGGACTCACTTGCTTCTTGCACTGGAGTTAAGCAACCCGCAAT 245
Query 269 TGATCGTGATAACATGGAGAGAAGAAAACAAATAATACATTTTATACTGGAGAGGAAGGC 328
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 246 TGATCGTGATAACTTGGAGAGAAGAAAACAAATAATACATTTTATACTGGAGAGGAAAGC 305
Query 329 GTTGAAGGCTTTTGAACTAACTGAACAACTAGCACAAGACTTGCTTGAGAAAAACAAGGA 388
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GTTGAAGGCTGTTGAACTAACTGAACAACTAGCACAAGACTTGCTTGAGAAAAACAAGGA 365
Query 389 TTTGCAATTCGATCTTCTATGCCTTCATTTTGTGGAGCTAATCTGTGCTGGGAACTGCAC 448
|||||| |||||||||||||||||||||||||| || | | |||||||||||||||||||
Sbjct 366 TTTGCACTTCGATCTTCTATGCCTTCATTTTGTCGACCGAGTCTGTGCTGGGAACTGCAC 425
Query 449 CGAAGCTCTCAAATTTGGTAAGACAAGATTGGCTCCTTTTGGGAAGGTCAAAAAATATGT 508
|||||||| |||||| | |||| |||||||||||||||||||||||| |||||||||
Sbjct 426 AGAAGCTCTTGAATTTGCTCAGACGAGATTGGCTCCTTTTGGGAAGGTCCCAAAATATGT 485
Query 509 AGAAAAGCTTGAAGACGTAATGGCATTGCTCGCTTATGAAGACCCTGAGAAATCCCCAAT 568
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 486 AGAAAAGCTTGAAGACGTAATGGCATTGCTGGCTTATGAAGACCCTGAGAAATCCCCAAT 545
Query 569 GTTCCATCTTTTGAGCTCTGAATACCGCCAACAAGTTGCTGATAATCTGAACCGCACAAT 628
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||
Sbjct 546 GTTCCATCTTTTGAGCTCTGAATACCGACAACAGGTTGCTGATAATCTGAACCGTACGAT 605
Query 629 TCTTGAACACACAAACCACCCGAGCTACACACCAATGGAAAGGATCATACAACAGGTGAC 688
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 606 TCTTGAACACACAAACCACCCAAGCTACACACCAATGGAAAGGATCATACAACAGGTGAC 665
Query 689 AGTTGTGAGACAATACTTGACTGAGGAGAATGGCAAAGATGCGTTTCCTCCATTCTCTCT 748
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 666 AGTTGTGAGACAATACTTGACTGAGGAGAATGGCAAAGATGCGTTTCCTCCATTTTCTCT 725
Query 749 GAAGGATTCTCTCAAAGGCTAAGATCGCAGGACTACTCCAAAGTTTGCTAGGAGGAGGAT 808
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CAAGGATTCTCTCAAAGGCTAAGATCGCAGGACTACTCCAAAGTTTGCTAGGAGGAGGAT 785
Query 809 ATGCTAAGCATTGTCATGTAAATACAAAAAGA--CCTTGCTCCTCTC-TAAAGTTTGCAA 865
|||||||||||||||||||||||||||||| | |||||||| |||| | || |||
Sbjct 786 ATGCTAAGCATTGTCATGTAAATACAAAAAAAAACCTTGCTCATCTCCTTT-GTA--CAA 842
Query 866 GGTTAGTCTTCCATGGCCACAGGCGGGGTTTCAGTTTGCTGTTACAGGAGATCAATATTG 925
||||| |||||||||||||||| ||| |||| |||||||||| || |||||| ||||||
Sbjct 843 GGTTATTCTTCCATGGCCACAGAAGGGATTTCGGTTTGCTGTTGCAAGAGATCGATATTG 902
Query 926 TGAAGGACAGTTTCGGCTTGGTTTGGTTTGGTTTGGTTCAGTTCTCTACCAGAAGATTGT 985
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 903 TGAAGGACAGTTTCGGCTTGGTTTGGTTTGGTTCGGTTCAGTTCTCTACCAGAA-ATTGT 961
Query 986 TTCATCAACTTTGTGTGAGTTTAGTCGATAAATCTGTAATCCATATCTTTGGAATACACA 1045
| | |||||||||||||||||||| |||||||||||||||||||||| |||||| ||| |
Sbjct 962 TCCCTCAACTTTGTGTGAGTTTAG-CGATAAATCTGTAATCCATATCCTTGGAA-ACA-A 1018
Query 1046 TTTCTCTTTGTAACTATCGTTTATGT-T--TT-GATA--GAATACTTGCAAATTCAAGGT 1099
|||||||||||||||||| ||||| | | || |||| ||| | | |||||||||| ||
Sbjct 1019 TTTCTCTTTGTAACTATCTTTTATTTATGCTTTGATATAGAACAATCGCAAATTCAAAGT 1078
Query 1100 TTTATTT 1106
|||||||
Sbjct 1079 TTTATTT 1085
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5