BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06070.1
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919313 jgi|Araly1|919313|scaffold_100594.1 2025 0.0
> Ahg919313 jgi|Araly1|919313|scaffold_100594.1
Length=1327
Score = 2025 bits (1096), Expect = 0.0
Identities = 1257/1332 (94%), Gaps = 22/1332 (2%)
Strand=Plus/Plus
Query 227 TGGGTTTAGGTCAAGTTCTTGAAATGGATAAGGAGAAATCTCCTGCACCACCACCTAGTG 286
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||
Sbjct 1 TGGGTTTAGGTCAAGTTCTGGATATGGATAAGGAGAAATCTCCTG---CACCACCTAGTG 57
Query 287 GAGGTCTTCCTCCACCATCGGGTCGTTACTCTGCGTTTTCACCTAATGGAAGTAGCTTTG 346
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GAGGTCTTCCTCCACCATCAGGTCGTTACTCTGCGTTTTCACCTAATGGAAGTAGCTTTG 117
Query 347 CAATGAAAGCTGAATCATCTTTTCCTCC-TTTGACTCCAAGTGGAAGCAATAGCTCAGAT 405
|||||||| |||||||||| ||||| || |||||||||||||| |||| |||||||||
Sbjct 118 CAATGAAATCTGAATCATCGTTTCC-CCACTTGACTCCAAGTGGGAGCAGCAGCTCAGAT 176
Query 406 GCTAACCGATTCAGCCATGATATTAGCCGAATGCCGGATAATCCACCTAAGAACCTAGGC 465
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 177 GCTAACCGATTCAGCCACGATATAAGCCGAATGCCGGATAATCCACCTAAGAACCTAGGC 236
Query 466 CATCGCCGAGCTCATTCAGAGATTCTTACTCTTCCTGATGACTTAAGCTTTGATAGTGAT 525
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 237 CATCGCCGAGCTCATTCAGAGATTCTTACTCTTCCTGATGACTTGAGCTTTGATAGTGAT 296
Query 526 CTTGGTGTGGTTGGTGCTGCTGATGGACCTTCTTTCTCTGATGATACTGACGAGGACTTA 585
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 297 CTTGGTGTGGTTGGTGCTGCTGATGGACCTTCTTTTTCTGATGATACGGATGAGGACTTA 356
Query 586 CTCTATATGTATCTTGATATGGAAAAATTCAATTCTTCTGCTACATCGACTTCTCAAATG 645
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 CTGTATATGTATCTTGATATGGATAAATTCAATTCTTCTGCTACATCGACTTCTCAAATG 416
Query 646 GGTGAGCCATCAGAACCGA-CTTGGAGGAATGAATTAGCCTCGACTTCTAACCTTCAGAG 704
||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 417 GGTGAGCCATCAGAACC-AGCTTGGAGGAATGAATTAGGCTCGACTTCTAACCTTCAGAG 475
Query 705 TACACCCGGTAGCTCTAGTGAAAGACCGAGAATTAGACACCAACACAGCCAATCGATGGA 764
||| || |||||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct 476 TACGCCTGGTAGCTCTAATGAAAGACCGAGAATCAGGCACCAACACAGCCAATCGATGGA 535
Query 765 TGGTTCAACAACTATCAAGCCTGAGATGCTTATGTCAGGGAATGAAGATGTGTCTGGAGT 824
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TGGTTCGACAACTATCAAACCTGAGATGCTTATGTCAGGGAATGAAGATGTGTCTGGAGT 595
Query 825 TGACTCTAAGAAAGCCATCTCTGCTGCTAAACTTTCTGAGCTTGCTCTCATTGATCCAAA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 596 TGACTCTAAGAAAGCCATCTCTGCTGCTAAACTTTCTGAGCTTGCTCTCATTGATCCTAA 655
Query 885 ACGCGCCAAGAGGATATGGGCAAACAGGCAGTCTGCTGCGAGGTCAAAAGAAAGGAAGAT 944
||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 ACGTGCTAAGAGGATATGGGCAAACAGACAGTCTGCTGCGAGGTCAAAAGAAAGGAAGAT 715
Query 945 GAGATACATTGCAGAGCTCGAGAGAAAAGTACAGACTTTACAAACAGAGGCCACATCTCT 1004
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GAGATATATTGCAGAGCTCGAGAGAAAAGTACAGACTTTACAAACAGAGGCCACATCTCT 775
Query 1005 CTCAGCCCAGTTGACTCTCTTACAGAGAGATACAAATGGCCTGGGTGTTGAAAACAATGA 1064
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 776 CTCAGCCCAGTTGACTCTGTTACAGAGAGATACAAATGGCCTGAGTGTTGAAAACAATGA 835
Query 1065 GCTTAAACTGCGAGTACAAACTATGGAGCAACAGGTCCACCTACAGGATGCTTTAAATGA 1124
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 836 GCTTAAACTGCGAGTACAAACTATGGAGCAACAGGTTCACCTACAGGACGCTTTAAATGA 895
Query 1125 TGCACTAAAGGAGGAAGTCCAGCATCTTAAGGTATTGACGGGGCAAGGTCCATCAAATGG 1184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGCACTGAAGGAGGAAGTCCAGCATCTTAAGGTATTGACGGGGCAAGGTCCATCAAATGG 955
Query 1185 TACATCAATGA--A-CTACGGTTCTTTTGGATCAAACCAGCAATTCTATCCCAATAATCA 1241
||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 956 TACATCAATGATGAACTACGGTTCTTTCGGATCAAACCAGCAATTTTATCCCAATAATCA 1015
Query 1242 GTCGATGCACACTATCTTAGCCGCacaacagttacagcagctccagatccagtcacagaa 1301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1016 GTCGATGCACACTATCTTAGCCGCACAACAGTTCCAGCAGCTCCAGATCCAGTCACAGAA 1075
Query 1302 acagca--a-caacaacaacagcaacaccagcaacaaca--a-cagca------gcagca 1349
|||||| | |||||||||||||| || || |||||||| | ||||| ||||||
Sbjct 1076 ACAGCAGCAGCAACAACAACAGCAGCAGCAACAACAACACCAGCAGCAACAACAGCAGCA 1135
Query 1350 gcagcaatttcactttcaacagcagcaactgtaccagcttcagcagcagcaaCGGCTTCA 1409
|||||||||||| ||||| |||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 1136 GCAGCAATTTCAGTTTCAGCAGCAGCAACTGTATCAGTTTCAGCAGCAGCAGCGGCTTCA 1195
Query 1410 ACAACAGGAACAACAAAGCGGGGCTTCAGAGCTAAGAAGACCCATGCCTTCTCCTGGTCA 1469
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1196 ACAACAGGAACAACAAAGCGGGGCTTCAGAACTAAGAAGACCCATGCCTTCTCCAGGTCA 1255
Query 1470 GAAAGAGAGTGTGACATCGCCTGATCGTGAAACTCCCTTGACAAAAGACTGAGTCTAGAC 1529
||||||||||||| | |||||||||| |||| |||||||||||||||||||||| |||||
Sbjct 1256 GAAAGAGAGTGTGGCGTCGCCTGATCTTGAAGCTCCCTTGACAAAAGACTGAGTGTAGAC 1315
Query 1530 TGTGCTAATGTC 1541
||||||||||||
Sbjct 1316 TGTGCTAATGTC 1327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71114487415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5