BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06080.1
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919315 jgi|Araly1|919315|scaffold_100596.1 1585 0.0
Ahg482064 jgi|Araly1|482064|fgenesh2_kg.4__1124__AT2G31360.1 577 8e-164
> Ahg919315 jgi|Araly1|919315|scaffold_100596.1
Length=959
Score = 1585 bits (858), Expect = 0.0
Identities = 928/962 (96%), Gaps = 4/962 (0%)
Strand=Plus/Plus
Query 74 ATACATAGTTTTATTACAAGATGTCATTGTCAGCCTCGGAGAAGGAGGAGAA-TAACAAG 132
||||||| |||| || ||||||||||||||||||||| |||||||||||||| | | |
Sbjct 1 ATACATAATTTTCTTTCAAGATGTCATTGTCAGCCTCAGAGAAGGAGGAGAACCATC-GG 59
Query 133 AAAATGGCAGCGGACAAGGCTGAGATGGGGAGGAAGAAGAGGGCAATGTGGGAAAGAAAG 192
|||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 60 AAAATGGCTGCGGACAAGGCTGAGAAGGGGAGGAAGAAGAGGGCATTGTGGGAAAGAAAG 119
Query 193 TGGAAGAGATTGGACATTGTGAAAGCTTTTGCATCTCTCTTTGTCCATTTCCTCTGTCTC 252
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 120 TGGAAGAGATTGGACATTGTGAAAGCTTTTGCTTCTCTCTTTGTGCATTTCCTCTGTCTC 179
Query 253 TTGGCGCCTTTCAATTTCACTTGGCCGGCTTTAAGAGTCGCCCTCATTGTCTATACGGTG 312
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTGGCTCCTTTCAATTTCACTTGGCCGGCTTTAAGAGTCGCCCTCATTGTCTATACGGTG 239
Query 313 GGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGGCTCACCGGAGCTTCAAAGTC 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGGCTCACCGGAGCTTCAAAGTC 299
Query 373 CCTAAATGGCTCGAGTATTTCTTCGCTTATTGCGGCCTTCTTGCCATTCAGGGAGATCCG 432
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 300 CCTAAATGGCTCGAGTATTTCTTCGCCTATTGTGGCCTTCTCGCCATTCAGGGAGATCCG 359
Query 433 ATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTACAGATTCGGATAGGGACCCA 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTACAGATTCGGATAGGGACCCA 419
Query 493 CATAGTCCTAACGAAGGATTTTGGTTCAGTCACCTCCTATGGCTATTTGATACCGGTTAT 552
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 CATAGTCCTAATGAAGGATTTTGGTTTAGTCACCTCCTATGGCTATTTGATACCGGTTAT 479
Query 553 CTTGTAGAAAAGTGTGGAAGAAGGACAAATGTGGAGGACTTAAAGAGGCAGTGGTACTAT 612
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 CTTGTAGAAAAGTGTGGAAGAAGGACAAATGTGGAGGACTTAAAGAAGCAGTGGTACTAT 539
Query 613 AAATTCCTCCAAAGAACAGTCCTTTACCACATTCTAACATTTGGTTTCCTCCTCTATTAC 672
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 AAATTCCTTCAAAGAACAGTCCTTTACCACATTCTAGCATTTGGTTTCCTCCTCTATTAC 599
Query 673 TTTGGTGGTTTGTCTTTTCTTACTTGGGGAATGGGTATTGGGGTAGCAATGGAGCATCAT 732
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 TTTGGTGGTTTGTCTTTTCTTACTTGGGGAATGGGTATTGGGGTAGCGATGGAGCATCAT 659
Query 733 GTGACTTGCCTCATAAACTCTCTTTGCCATGTTTGGGGAAGCCGAACTTGGAAGACTAAT 792
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 GTGACTTGCCTCATCAACTCTCTTTGCCATGTTTGGGGAAGCCGGACTTGGAAGACTAAT 719
Query 793 GACACTTCCCGTAACGTTTGGTGGCTATCAGTATTCTCGTTTGGAGAGAGCTGGCACAAC 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GACACTTCCCGTAACGTTTGGTGGCTATCAGTATTCTCGTTTGGAGAGAGCTGGCACAAC 779
Query 853 AATCACCACGCCTTCGAATCCTCGGCGAGACAAGGCTTAGAATGGTGGCAAATCGACATT 912
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 AATCACCACGCCTTCGAGTCCTCGGCGAGACAAGGCTTGGAATGGTGGCAAATCGACATT 839
Query 913 TCTTGGTATATTGTCCGCTTTCTCGAGATTATCGGTTTGGCTACTGATGTTAAGTTGCCT 972
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 840 TCTTGGTATATTGTCCGCTTTCTCGAGATTATCGGCTTGGCTACTGATGTCAAGTTGCCT 899
Query 973 TCCGAGAGTCAACGTCGTCGTATGGCAATGGTTCGTTGAAGATATGGAACGACGTCTCGT 1032
|||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 900 TCCGAGAGTCAACGACGTCGCATGGCAATGGTTCGTTGAAGAT--GGAACGACGTCTCGT 957
Query 1033 CT 1034
||
Sbjct 958 CT 959
> Ahg482064 jgi|Araly1|482064|fgenesh2_kg.4__1124__AT2G31360.1
Length=1302
Score = 577 bits (312), Expect = 8e-164
Identities = 678/851 (80%), Gaps = 40/851 (5%)
Strand=Plus/Plus
Query 181 TGGGAAAGAAAGTGGAAGAGATTGGACAT-TGTGAAAGCTT-T-TGCATCTCTCTTTGTC 237
||||| |||| ||||| |||||| || | ||||||| || | || ||| || |||
Sbjct 139 TGGGATAGAAGGTGGAGGAGATTAGA-TTATGTGAAA--TTCTCAGCTTCTTTCACTGTT 195
Query 238 CATTTCCTC-TG-TCTCTTGGCGCC-TTTCAATTTCACTTGGCCGGCT-TTAAGAGTCGC 293
|| || ||| || ||||||||| || ||| ||||||| ||| ||||| || | ||
Sbjct 196 CA-TT-CTCTTGCTCTCTTGGCTCCGTTT-TATTTCACATGGTCGGCTCTT-TGGGT-TA 250
Query 294 CCTCATTG-TCTATACGGTGGGTGGGCTCGGTATCACCGTCTCTTACCACCGAAATTTGG 352
| | ||| | || || | ||||| || |||||||||||||| || || || || ||||
Sbjct 251 CGTTTTTGTTTTACACCATCGGTGGTCTTGGTATCACCGTCTCCTATCATCGGAACTTGG 310
Query 353 CTCACCGGAGCTTCAAAGTCCCTAAATGGCTCGAGTATTTCTTCGCTTATTGCGGCCTTC 412
|||||||||| |||||||||||||||||||| |||||| |||| || ||||| | |||||
Sbjct 311 CTCACCGGAGTTTCAAAGTCCCTAAATGGCTTGAGTATCTCTTAGCCTATTGTGCCCTTC 370
Query 413 TTGCCATTCAGGGAGATCCGATTGATTGGGTGAGCACACATCGATACCATCACCAGTTTA 472
| || ||||||||||||||||||||||||||||| || ||||| || ||||||||||| |
Sbjct 371 TCGCTATTCAGGGAGATCCGATTGATTGGGTGAGTACTCATCGTTATCATCACCAGTTCA 430
Query 473 CAGATTCGGATAGG-GACCCACATAGTCCTAACGAAGGATTTTGGTTCAGTCACCTCCTA 531
| ||||| || | | || ||||||||||| || ||||| |||||||| ||||| || ||
Sbjct 431 CGGATTCAGA-ACGTGATCCACATAGTCCCAAGGAAGGTTTTTGGTTTAGTCATCTTCTT 489
Query 532 TGGCTATTTGA-TACCGGTTATCTTGTAGAAAAGTGTGGAAGAAG-GACAAATGTGGAGG 589
||| | | ||| | | | |||||||| |||||||||||||||| | ||||||||||||
Sbjct 490 TGGATCTATGACT-CTGCCTATCTTGTTCAAAAGTGTGGAAGAAGAG-CAAATGTGGAGG 547
Query 590 ACTTAAAGAGGCAGTGGTACTATAAATTCCTCCA-AAGAACAGTCCT-TTACCACATTCT 647
| || |||||||| |||| || || || || || |||||| || || | ||||| |
Sbjct 548 ATTTGAAGAGGCAATGGTTTTACCGGTTTCTTCAGAA-AACAGTGCTATTTC-ACATTTT 605
Query 648 AACATTTGGTTTCCTCCTCTAT-TA-CTTTGGTGGTTTGTCTTTTC-TTACTTGGGGAAT 704
| ||| || ||| | |||| | || ||| ||||| |||| || | |||||||||||||
Sbjct 606 AGGATTGGGCTTCATTCTCT-TCTATCTT-GGTGGCATGTCCTT-CGTTACTTGGGGAAT 662
Query 705 GGGTATTGGGGTAGCAATGGA-GCATCATGTGACTTGCCTCATAAACTCTCTTTGCCATG 763
||| | || | ||| |||| | || |||||||||||||||||||| || ||||||
Sbjct 663 GGGGGTAGGAGCAGCGTTGGAAGTG-CACGTGACTTGCCTCATAAACTCACTCTGCCATA 721
Query 764 TTTGGGGAAGC-CGAACTTGGAAGACTAATGACACTTCCCGTAACGTTTGGTGGCTATCA 822
||||||| | | |||||||||||||| ||||||||||| ||||| ||||||||| ||||
Sbjct 722 TTTGGGGCA-CTCGAACTTGGAAGACCAATGACACTTCTCGTAATGTTTGGTGGTTATCG 780
Query 823 GTATTCTCGTTTGGAGAGAGCTGGCACAACAATCACCACGCCTTCGAATCCTCGGCGAGA 882
||||| || ||||||||||| |||||||||||||| || || ||||| || ||||| |||
Sbjct 781 GTATTTTCATTTGGAGAGAGTTGGCACAACAATCATCATGCGTTCGAGTCATCGGCTAGA 840
Query 883 CAAGG-CTTAGAATGGTGGCAAATCGACATTTCTTGGTATATTGTCCGCTTTCTCGAGAT 941
||||| ||| ||||||||||||||||||||||| ||||| ||||| || ||| |||||||
Sbjct 841 CAAGGACTT-GAATGGTGGCAAATCGACATTTCGTGGTACATTGTTCGGTTTTTCGAGAT 899
Query 942 TATCGGTTTGGCTACTGATGTTAAGTTGCCTTCCGAGAG-TCAACGTCGTCGTATGGCAA 1000
||||||||| || || ||||| ||| ||||| | ||| | |||||| ||||||||||| |
Sbjct 900 TATCGGTTTAGCGACCGATGTGAAGGTGCCTACGGAG-GCTCAACGACGTCGTATGGCTA 958
Query 1001 TGGTTCGTTGA 1011
| |||||||||
Sbjct 959 TCGTTCGTTGA 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45556885815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5