BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06100.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910293 jgi|Araly1|910293|Al_scaffold_0001_547 1419 0.0
Ahg470621 jgi|Araly1|470621|fgenesh2_kg.1__575__AT1G06090.1 1024 0.0
Ahg470654 jgi|Araly1|470654|fgenesh2_kg.1__608__AT1G06360.1 638 0.0
> Ahg910293 jgi|Araly1|910293|Al_scaffold_0001_547
Length=900
Score = 1419 bits (768), Expect = 0.0
Identities = 858/902 (95%), Gaps = 4/902 (0%)
Strand=Plus/Plus
Query 1 ATGAGTGAGACCACTAAGGACGATGGCTCTAGCCaaaaaaaaTCAGTGCGTAAGGAAAAA 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAGTGACACCACTAAGGACGATGGCTCTAGCCAAAACAAATCAGTGCGTAAGGAAAAA 60
Query 61 AGAGCGTATGTTTTAAGGAAATGGACCCAGTTCGATGTTGGGAGAGCTTCGACTGTTGGA 120
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGCGCCTTTTTTAAGGAAATGGACCCAGTTCGATGTTGGGAGAGCTTCGACTGTTGGA 120
Query 121 ACCGTGCATCTGTTGTGTCTATTGGCTCCTTTTAACTACAAATGGGAAGCATTCCGGTTC 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ATCGTGCATCTGTTGTGTCTATTGGCTCCTTTTAACTACAAATGGGAAGCATTGCGGTTC 180
Query 181 GGTATAATTCTCGCCATACTGACAAACCTCTGCATTACATTCTCGTACCATAGGAACTTG 240
|||| |||| || ||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GGTACAATTATCACCATAGTGACAAACCTCAGCATTACATTCTCGTACCATAGGAACTTG 240
Query 241 ACTCACCGGAGCTTTA-AGCTACCGAAATGGCTTGAATATCCATTCGCTTATTCTGCTCT 299
|||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 ACTCACCGGAGCTTTACA-CTACCTAAATGGCTTGAATATCCATTCGCTTATTCTGCTCT 299
Query 300 TTTGGCACTTCAGGGTGATCCATTGGATTGGGTGAGCATACATAGATTCCATCACCAGTT 359
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TTTTGCACTTCAGGGTGATCCATTGGATTGGGTGAGCATTCATAGATTCCATCACCAGTT 359
Query 360 CACAGATTCTGACCGTGATCCACATAGCCCTATAGAAGGATTCTGGTTCAGTCATGTTTT 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 CACAGATTCTGACCGTGATCCACATAGCCCTATCGAAGGATTCTGGTTCAGTCATGTTTT 419
Query 420 GTGGATATTTGACACCGATTATATCAGAGAAAAGTGTGGAAGACGTAACAACGTGATGGA 479
||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 GTGGATATTTGACTCCGAATATATCAGAGAAAAGTGCGGAAGACGTAACAACGTGATGGA 479
Query 480 CTTGAAGCAACAATGGTTCTATAGGTTTCTAAAAAAGACGTTGGTTCTCCACATCTTAGC 539
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 480 CTTGAAGCAACAATGGTTCTACAGGTTTCTAAAAAAGACATTGGTTCTCCACATCTTTGT 539
Query 540 ATTTTGGACCCTCATCTACTTATGGGGTGGTCTACCTTACCTAACTTGGACTGTGGGTTT 599
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 ATTTTGGACCCTCATCTACTTATGGGGTGGTCTACCTTACCTAACTTGGACCGTGGGTTC 599
Query 600 TGGAGGAGTAATT-GGTTACCATGGGACTTGGCTCGTAAATTCGGCATGCCATATTTGTG 658
|||||||| ||| | |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 600 TGGAGGAG-CATTCGCTTACCACGGGACTTGGCTCGTAAACTCGGCATGCCATATTTGTG 658
Query 659 GTTCGCAAGCGTGGCAAACCAATGACACCTCACGTAACGTTTGGTGGCTAGCGCTATTGA 718
||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 GTTCGCAAGTGTGGCACACCAATGACACCTCTCGTAACGTTTGGTGGCTAGCGCTATTGA 718
Query 719 CTATGGGAGAGAGCTGGCACAACAACCACCATGCCTTTGAGACGTCGGCTAGGCACGGAC 778
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 719 CTATGGGAGAGAGCTGGCACAACAACCACCATGCCTTTGAGGCGTCGGCTAGGCATGGAC 778
Query 779 TAGAATGGTATCAGTTAGACATAACTTGGTACCTCATTTGGTTCTTCCAGGCTCTCGGTT 838
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
Sbjct 779 TAGAATGGTATCAGTTAGACATAACTTGGTACCTCATTCGGTTCTTTCAGGCTCTCGGCT 838
Query 839 TAGCCACCAATGTCAAATTACCTACCGATGCTCAGAAACGCAAGATGGCTATCCGTCGTT 898
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 839 TAGCCACCAATGTCAAATTGCCTACCGATGATCAGAAACGCAAGATGGCTATCCCTCGTT 898
Query 899 AA 900
||
Sbjct 899 AA 900
> Ahg470621 jgi|Araly1|470621|fgenesh2_kg.1__575__AT1G06090.1
Length=941
Score = 1024 bits (554), Expect = 0.0
Identities = 783/894 (88%), Gaps = 14/894 (2%)
Strand=Plus/Plus
Query 13 ACTAAGGACGATGGCTCTAGCCaaaaaaaaTCAGTGCGTAAGGAAAAAAGAGCG-TATGT 71
||||||||||||||||||||||||| ||| | || |||| || |||||||||| | | |
Sbjct 52 ACTAAGGACGATGGCTCTAGCCAAAGCAAAGCGGTACGTAGGGGAAAAAGAGCGTTCT-T 110
Query 72 TTTAAGGAAATGGACCCAGTTCGATGTTGGGAGAGCTTCGACTGTTGGAACCGTGCATCT 131
||| ||||||||||||| | ||||||| |||||||||| ||||||| | ||||||||
Sbjct 111 TTTCAGGAAATGGACCCGGATCGATGTAATGAGAGCTTCGGCTGTTGGGTCTGTGCATCT 170
Query 132 GTTGTGTCTATTGGCTCCTTTTAACTACAAATGGGAAGCATTCCGGTTCGGTATAATTCT 191
|||||||||||||| || ||||||| |||||||||||| || ||||| ||| | |||||
Sbjct 171 ATTGTGTCTATTGGCACCGTTTAACTTCAAATGGGAAGCTTTTCGGTTTGGTGTGATTCT 230
Query 192 CGCCATACTGACAAACCTCTGCATTACATTCTCGTACCATAGGAACTTGACTCACCGGAG 251
||| ||| |||| | ||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 231 CGCTATAGTGACTAGTCTCAGCATTACATTTTCATACCATAGGAACTTGACTCACCGGAG 290
Query 252 CTTTAAGCTACCGAAATGGCTTGAATATCCATTCGCTTATTCTGCTCTTTTGGCACTTCA 311
||||||||| || |||||||||||||||| ||||||||| |||| ||||| || |||||
Sbjct 291 CTTTAAGCTCCCTAAATGGCTTGAATATCTATTCGCTTACACTGCCCTTTTCGCGCTTCA 350
Query 312 GGGTGATCC-ATTGGATTGGGTGAGCATACATAGATTCCATCACCAGTTCACAGATTCTG 370
|||| |||| | | ||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 351 GGGTCATCCGA-TAGATTGGGTGAGCACGCATAGGTTCCATCACCAGTTCACAGATTCAG 409
Query 371 ACCGTGATCCACATAGCCCTATAGAAGGATTCTGGTTCAGTCATGTTTTGTGGATATTTG 430
||||||| |||||||| |||||||||||||| ||||||||||| || ||||||||||| |
Sbjct 410 ACCGTGACCCACATAGTCCTATAGAAGGATTTTGGTTCAGTCACGTCTTGTGGATATTCG 469
Query 431 ACACCGA-TTATATCAGAGAAAAGTGTGGAAGACGTAACAACGTGATGGACTTGAAGCAA 489
||||| | |||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 470 ACACC-AGTTATATCAGAGAAAAGTGTGGAGGACGTGACAACGTGATGGACTTGAAGAAA 528
Query 490 CAATGGTTCTATAGGTTTCTAAAAAAGAC-GTTGGTTCTCCACATCTTAGCATTTTGGAC 548
|||||||||||||||||||| ||| || |||| |||||||||||| ||||||||||
Sbjct 529 CAATGGTTCTATAGGTTTCTTCGAAACACAATTGG-CCTCCACATCTTATCATTTTGGAC 587
Query 549 CCTCATCTACTTATGGGGTGGTCTACCTTACCTAACTTG-GACTGTGGGTTTTGGAGGAG 607
||| |||| ||||||||||||||||||||||||||||| | | |||||| | |||||||
Sbjct 588 TCTCGTCTATTTATGGGGTGGTCTACCTTACCTAACTTGCGGC-GTGGGTGTGGGAGGAG 646
Query 608 TAATTGGTTACCATGGGACTTGGCTCGTAAATTCGGCATGCCATATTTGTGGTTCGCAAG 667
||| |||||| | |||||||||||| |||| || |||||||||||||| || ||||||
Sbjct 647 CAATCGGTTACAACGGGACTTGGCTCATAAACTCAGCATGCCATATTTGGGGCACGCAAG 706
Query 668 CGTGGCAA-ACCAATGACACCTCACGTAACGTTTGGTGGCTAGCGCTATTGACTATGGGA 726
| ||| || ||||| ||||| || ||||||||||||||||||| || ||| || ||||||
Sbjct 707 CATGG-AATACCAAGGACACTTCTCGTAACGTTTGGTGGCTAGGGCCATTCACGATGGGA 765
Query 727 GAGAGCTGGCACAACAACCACCATGCCTTTGAGACGTCGGCTAGGCACGGACTAGAATGG 786
||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct 766 GAGAGCTGGCACAACAACCACCATGCCTTTGAGGCGTCGGCTAGACACGGACTGGAATGG 825
Query 787 TATCAGTTAGACATAACTTGGTACCTCATTTGGTTCTTCCAGGCTCTCGGTTTAGCCACC 846
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TATCAGGTAGACTTAACTTGGTACCTCATTTGGTTCTTCCAGGCTCTCGGTTTAGCCACC 885
Query 847 AATGTCAAATTACCTACCGATGCTCAGAAACGCAAGATGGCTATC-CGTCGTTA 899
|||||||||| |||||||||||||||||||||||||||||| || | ||||||
Sbjct 886 GATGTCAAATTGCCTACCGATGCTCAGAAACGCAAGATGGCTTTCGC-TCGTTA 938
> Ahg470654 jgi|Araly1|470654|fgenesh2_kg.1__608__AT1G06360.1
Length=984
Score = 638 bits (345), Expect = 0.0
Identities = 635/772 (82%), Gaps = 32/772 (4%)
Strand=Plus/Plus
Query 133 TTGTGTCTATTGGCTCCTTTTAACTACAAATGGGAAGCAT-TCCGGTTCGGTATAAT--T 189
|||||||| ||||| || |||||||||||||||||||| | | ||||||||| | | |
Sbjct 175 TTGTGTCTCTTGGCACCGTTTAACTACAAATGGGAAGC-TCTACGGTTCGGTTTTGTGCT 233
Query 190 CT-CGCCATACTGACAAAC-CTCTGCATTACATTCTCGTACCATAGGAACTTGACTCACC 247
|| || ||| |||| | ||| ||||||||||||| ||||||||||||||| ||||||
Sbjct 234 CTACG-CAT--TGAC-TTCACTCAGCATTACATTCTCATACCATAGGAACTTGGCTCACC 289
Query 248 GGAGCTTTAAGCTACCGAAATGGCTTGAATATCCATTCGCTTATTCTGCTCTTTTGGCAC 307
||||||| ||||| |||||||||||||||||||| || ||||||| |||| |||| || |
Sbjct 290 GGAGCTTCAAGCTTCCGAAATGGCTTGAATATCCTTTAGCTTATTTTGCTGTTTTTGCTC 349
Query 308 TTCAGGGTGATCCATTGGATTGGGTGAGCATACATAGATTCCATCACCAGTTCACAGATT 367
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 350 TTCAGGGTGATCCGTTGGATTGGGTGAGCATACATAGGTTCCATCACCAGTTCACTGATT 409
Query 368 CTGACCGTGATCCACATAGCCCTATAGAAGGATTCTGGTTCAGTCATGTTTTGTGGATAT 427
|||||||||| |||||||||||||| |||||||| |||||||||||||| | ||||||||
Sbjct 410 CTGACCGTGACCCACATAGCCCTATCGAAGGATTTTGGTTCAGTCATGTGTGGTGGATAT 469
Query 428 TTGACAC-CGATTATATCAGAGAAAAGTGTGGAAGACGTAACAACGTGATGGACTTGAAG 486
|||||| || |||||||| | | ||||||||| ||||||||||||||||||||||||||
Sbjct 470 GTGACACTCG-TTATATCAAATATAAGTGTGGAGGACGTAACAACGTGATGGACTTGAAG 528
Query 487 CAACAATGGTTCTATAGGTTTCTAAAAAAGACG-TTGGTTCTCCACATCTTAGCATTTTG 545
|||||||||||||| ||||||||| || ||| |||||| ||||| ||||| |||||
Sbjct 529 CAACAATGGTTCTACAGGTTTCTACGAATGACAATTGGTT-TCCACGTCTTAATGTTTTG 587
Query 546 GACCCTCATCTA-CT-TATGGGGTGGTCTACCTTACCTAACTTG-GACTGTGGGTTTTGG 602
||| || |||| || ||||| |||| |||||||||| || || | | | ||| ||||
Sbjct 588 GACTGTCCTCTATCTCTATGG--TGGTTTACCTTACCTTACATGCGGCGG-GGGCGTTGG 644
Query 603 AGGAGTAATTGGTTACCATGGGACTTGGCTCGTAAATTCGGCATGCCATATTTGTGGTTC 662
||| || ||||| ||||| | ||| ||||||||||| ||||||||||||||||| |||||
Sbjct 645 AGGTGTGATTGGGTACCACGTGACATGGCTCGTAAACTCGGCATGCCATATTTGGGGTTC 704
Query 663 GCAAG-CGTGGCAA-ACCAATGACACCTCACGTAACGTTTGGTGGCTAGCGCT-ATTGAC 719
| | | | ||| || || || ||||| || |||||||||||||||||| ||| ||| ||
Sbjct 705 G-AGGTCATGG-AAGACTAAAGACACATCTCGTAACGTTTGGTGGCTAA-GCTTATTTAC 761
Query 720 TATGGGAGAGAGCTGGCACAACAACCACCATGCCTTTGAGACGTCGGCTAGGCACGGACT 779
||||||||||| ||||| || || ||||| || |||||| | || || ||||| ||| |
Sbjct 762 AATGGGAGAGAGTTGGCATAATAATCACCACGCGTTTGAGTCATCAGCGAGGCAAGGATT 821
Query 780 AGAATGGTATCAGTTAGACATAACTTGGTACCTCATTTGGTTCTTCCAGGCTCTCGGTTT 839
|| |||| || |||| || |||||||| |||||| | | || ||| |||||| ||
Sbjct 822 GGAGTGGTGGCAAATAGATATCACTTGGTATCTCATTCGACTATTTGAGGTTCTCGGATT 881
Query 840 AGCCACCAATGTCAAATTACC-TACCGA-TGCTCAGAAACGCAAGAT-GGCT 888
|||||| |||| ||||| || | | || | ||||||||| || || ||||
Sbjct 882 AGCCACTGATGTGAAATTGCCCT-CGGAATT-TCAGAAACGGAA-ATTGGCT 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5