BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06130.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311691 jgi|Araly1|311691|fgenesh1_pm.C_scaffold_1000471 1537 0.0
Ahg320885 jgi|Araly1|320885|fgenesh1_pm.C_scaffold_4000942 1011 0.0
> Ahg311691 jgi|Araly1|311691|fgenesh1_pm.C_scaffold_1000471
Length=1458
Score = 1537 bits (832), Expect = 0.0
Identities = 906/943 (96%), Gaps = 0/943 (0%)
Strand=Plus/Plus
Query 144 GAAGCTAGTTAGTCAGCCATGTGTGAGGCCTTGCGTGAGACAGCTTCACGTCAGAAAGGG 203
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 516 GAAGCTAGCTAGTCAGCCATGTGTGAGGCCTTGCGTGAGACAGCTTCACCTCAGAAAGGG 575
Query 204 TCTTGTCTCTGGTGTCATGAAGCTGTTCTCTTCACCTCTTAGGACTTTGCGTGATGCTGG 263
|||||||||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct 576 TCTTGTCTCTGGTGCCATGAAGCTTTTCTCTTCCCCTCTTAGGACTTTGCGTGGTGCTGG 635
Query 264 TAAATCCGTTCGCATTTCAAGATTCTGCAGTGTCTCCAATGTCTCTTCCTCATTGCAAAT 323
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 636 TAAATCCGTTCGCTTTTCAAGGTTCTGCAGTGTCTCCAATGTCTCTTCCTCATTGCAAAT 695
Query 324 TGAACTGGTGCCATGTCTTACGGACAACTATGCTTATATCTTACATGATGAGGATACCGG 383
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 696 TGAACTGGTGCCATGTCTTACGGACAACTATGCTTATATTTTACATGACGAGGATACTGG 755
Query 384 TACAGTTGGTGTGGTTGACCCTTCTGAAGCTGTACCTGTTATGGATGCCCTCCAGAAGAA 443
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 756 TACAGTTGGTGTCGTTGACCCTTCTGAAGCTGTACCTGTTATGGATGCCCTGCAGAAGAA 815
Query 444 TAGTCGAAATCTAACTTATATATTAAATACACATCACCATTATGATCACACTGGTGGCAA 503
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 816 TAGTCGAAATCTAACTTACATATTAAATACACATCACCATTATGATCACACTGGTGGCAA 875
Query 504 TTTGGAATTAAAAGACAGGTATGGTGCAAAGGTGATCGGCTCAGCTGCAGATAGGGACCG 563
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 876 TTTGGAATTAAAAGACAGGTATGGTGCAAAGGTGATCGGCTCAGCTGTAGATAGGGACCG 935
Query 564 GATTCCTGGAATTGATGTAGCCTTGAAAGATGCTGACAAATGGATGTTTGCTGGCCATGA 623
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 936 CATACCTGGAATTGATGTAGCCTTGAAAGATGGTGACAAATGGATGTTTGCTGGCCATGA 995
Query 624 AGTCCATATTATGGAAACTCCTGGCCACACCAGAGGCCATATTAGTTTCTACTTTCCAGG 683
||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 996 AGTACATGTTATGGAAACTCCTGGCCATACTAGAGGCCATATTAGTTTCTACTTTCCAGG 1055
Query 684 GGCACGAGCAATTTTCACCGGGGACACCTTGTTTAGCTTATCATGTGGTAAACTCTTCGA 743
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1056 GGCACGAGCAATTTTCACCGGGGACACCTTATTTAGCTTATCATGTGGTAAGCTCTTCGA 1115
Query 744 AGGTACTCCAGAGCAGATGCTAGCTTCTCTACAGAGGATAATTGCGTTGCCAGATGACAC 803
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 1116 AGGTACTCCAGAGCAGATGCTAGCTTCTCTCCAGAGGATAATTGCTTTGCCAGATGATAC 1175
Query 804 AAGCGTATACTGTGGCCATGAATATACACTGAGTAATTCCAAGTTTGCATTGTCTATAGA 863
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1176 AAGCGTATACTGTGGCCATGAATACACACTGAGTAATTCCAAATTTGCGTTGTCTATAGA 1235
Query 864 ACCAACAAACGAAGTGCTCCAGTCTTATGCAGCCTACGTTGCAGAACTCCGTGACAAGAA 923
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1236 ACCAACAAACGAAGTACTCCAGTCTTATGCAGCCTACGTTGCAGAACTCCGTGAGAAGAA 1295
Query 924 ATTACCAACGATTCCAACGACGATGAAGATGGAGAAAGCTTGTAACCCGTTTCTCCGCAC 983
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1296 ACTACCAACGATTCCAACAACGATGAAGATGGAGAAAGCCTGTAACCCGTTTCTCCGCAC 1355
Query 984 TGAGAACACAGATATCCGTCGAGCTTTAGGTATTCCAGAGACAGCAGATGAAGCAGAAGC 1043
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1356 TGGGAACACAGATATCCGTCGAGCTTTAGGTATTCCAGAAACAGCAGATGAAGCAGAAGC 1415
Query 1044 TCTGGGTATTATAAGAAGAGCAAAGGACAATTTCAAAGCTTAG 1086
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 TCTGGGTATTATAAGAAGAGCAAAGGACAATTTCAAAGCTTAG 1458
> Ahg320885 jgi|Araly1|320885|fgenesh1_pm.C_scaffold_4000942
Length=975
Score = 1011 bits (547), Expect = 0.0
Identities = 854/998 (86%), Gaps = 37/998 (4%)
Strand=Plus/Plus
Query 91 ATGCAAGCCATCTCCAAAGTTTCTTCTGC-AGCATCATTCTTTAGATGTTCTAGGAAGCT 149
|||||| ||||||| |||| ||||||||| | | || |||||| ||||||||||||||||
Sbjct 1 ATGCAAACCATCTCAAAAGCTTCTTCTGCTATC-TCCTTCTTTCGATGTTCTAGGAAGCT 59
Query 150 AGTTAGTCAGCCATGTGTGAGGCCTTGCGTGAGACAGCTTCACGTCAGAAAGGGTCTTGT 209
| | | |||| | ||| || |||||||||||| || ||||||||||||||||
Sbjct 60 A-TCA---AGCC-------A-GCCATGTGTGAGACAGCTTAACATCAGAAAGGGTCTTGT 107
Query 210 CT-CTGGTGTCATGAAGCTGTTCTCTTCACCTCTTAGGACTTTGCGTGATGCTGGTAAAT 268
| | | || ||||||||| ||||||| |||||| |||||||||||| |||||||||||
Sbjct 108 GTGC-AGAGTGATGAAGCTGGTCTCTTCCCCTCTTCGGACTTTGCGTGGTGCTGGTAAAT 166
Query 269 CCGTTCGCA-TTTCAAGATTCTGCAGTGTCTCCAATGTCTCTTCCTCATTGCAAATTGAA 327
| |||| | | |||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 167 CTATTCG-AGTGTCAAAATTCTGCAGTGTCTCCAATGTCTC-T--TCATTGCAAATTGAA 222
Query 328 CTGGTGCCATGTCTTACGGACAACTATGCTTATATCTTACATGATGAGGATACCGGTACA 387
|||||||| || |||| ||| ||||||||||||||||| ||||| |||||||| ||||||
Sbjct 223 CTGGTGCCTTGCCTTAAGGATAACTATGCTTATATCTTGCATGACGAGGATACTGGTACA 282
Query 388 GTTGGTGTGGTTGACCCTTCTGAAGCTGTACCTGTTATGGATGCCCTCCAGAAGAATAGT 447
||||| |||||||||||||||||||||| ||||||||| ||| | | | | || | ||
Sbjct 283 GTTGGGGTGGTTGACCCTTCTGAAGCTGAACCTGTTATCGATTCGTTGAATAGGAGTGGT 342
Query 448 CGAAATCTAACTTATATATTAAATACACATCACCATTATGATCACACTGGTGGCAATTTG 507
||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 343 CGAAATCTAACATATATATTGAATACACATCATCATTATGATCACACTGGTGGGAATTTG 402
Query 508 GAATTAAAAGACAGGTATGGTGCAAAGGTGATCGGCTCAGCTGCAGATAGGGACCGGATT 567
||||||||||||||||| || ||||||||||| ||||||||| |||| |||||||||
Sbjct 403 GAATTAAAAGACAGGTACGGGGCAAAGGTGATTGGCTCAGCTATGGATAAAGACCGGATT 462
Query 568 CCTGGAATTGATGTAGCCTTGAAAGATGCTGACAAATGGATGTTTGCTGGCCATGAAGTC 627
|||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 463 CCTGGAATTGATATAGCATTGAAGGATGGTGACAAATGGATGTTTGCTGGCCATGAAGTC 522
Query 628 CATATTATGGAAACTCCTGGCCACACCAGAGGCCATATTAGTTTCTACTTTCCAGGGGCA 687
||| ||||||| |||||||||||||| | ||| ||||| || || ||||||||| | ||
Sbjct 523 CATGTTATGGATACTCCTGGCCACACAAAAGGGCATATCAGCTTATACTTTCCACGATCA 582
Query 688 CGAGCAATTTTCACCGGGGACACCTTGTTTAGCTTATCATGTGGTAAACTCTTCGAAGGT 747
||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 583 CGAGCGATCTTCACCGGGGACACGTTGTTTAGCTTATCATGTGGTAAACTCTTCGAAGGC 642
Query 748 ACTCC-AGAGCAGATGCTAGCTTCTCTACAGAGGATAAT-TGCGTTGCCAGATGACACAA 805
||||| | |||||||||| |||||||| || | ||| || | | || |||||||||||||
Sbjct 643 ACTCCTA-AGCAGATGCTTGCTTCTCTCCAAAAGATCATAT-CTTTACCAGATGACACAA 700
Query 806 GCGTATACTGTGGCCATGAATATACACTGAGTAATTCCAAGTTTGCATTGTCTATAGAAC 865
|| |||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct 701 GCATATACTGTGGTCATGAATATACACTGAGTAATTCCAAGTTTGCGTTGTCTCTAGAGC 760
Query 866 CAA-CAAACGAAGTGCTCCAGTCTTATGCAGC-CTACGTTGCAGAACTCCGT-GACAAGA 922
||| ||| |||||| ||||||||||||||||| | | |||||||| |||||| | |||||
Sbjct 761 CAAACAA-CGAAGTACTCCAGTCTTATGCAGCTC-ATGTTGCAGAGCTCCGTAG-CAAGA 817
Query 923 AATTACCAACGATTCCAACGACGA-TGAAGATGGAGAAAGCTTGTAACCCGTTTCTCCGC 981
||||||| |||||||| || || | ||||||||||||||||||||||||| || ||||||
Sbjct 818 AATTACCTACGATTCCGACAAC-ACTGAAGATGGAGAAAGCTTGTAACCCCTTCCTCCGC 876
Query 982 ACTG-AGAACACAGATATCCGTCGAGCTTTAGGTATTCCAGAGACAGCAGATGAAGCAGA 1040
| | | || |||||||| ||||| |||||| | ||||||||||| ||||||||||||||
Sbjct 877 AGTTCA-AATACAGATATTCGTCGGGCTTTACGCATTCCAGAGACCGCAGATGAAGCAGA 935
Query 1041 AGCTCT-GGGTATTATAAGAAGAGCAAAGGACAATTTC 1077
|||| | ||| ||||| ||| ||||||||| |||||
Sbjct 936 AGCTTTAGGG-ATTATCCGAAAAGCAAAGGATGATTTC 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5