BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06149.1
Length=2968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg311694 jgi|Araly1|311694|fgenesh1_pm.C_scaffold_1000474 3437 0.0
Ahg900935 jgi|Araly1|900935|Al_scaffold_0004_1585 1147 0.0
Ahg919325 jgi|Araly1|919325|scaffold_100606.1 233 5e-60
> Ahg311694 jgi|Araly1|311694|fgenesh1_pm.C_scaffold_1000474
Length=3990
Score = 3437 bits (1861), Expect = 0.0
Identities = 2093/2206 (95%), Gaps = 12/2206 (1%)
Strand=Plus/Plus
Query 525 ATGGGTTATACCTTGCAACAGATACTGAGGAGCATCTGCTCCAACACGGATTGGAACTAC 584
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGGTTCTACCTTGCAACAGATACTGAGGAGCCTCTGCTCCAACACGGATTGGAACTAT 60
Query 585 GCCGTGTTCTGGAAACTTAATCACCACTCGCCAATGGTTCTTACTTTGGAGGATGTGTAC 644
||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 61 GCCGTGTTCTGGAAACTCAATCACCACTCTCCTATGGTGCTTACTTTGGAGGATGTGTAC 120
Query 645 TGTGTTAATCATGAGCGCGGTTTGATGCCGGAAAGCTTGCATGGAGGGCGCCATGCTCAT 704
|||||||||||||||||||||||||||| | |||||||||| |||||| ||||||| |||
Sbjct 121 TGTGTTAATCATGAGCGCGGTTTGATGCAGAAAAGCTTGCAAGGAGGGTGCCATGCACAT 180
Query 705 GA-CCCTCTTGGGTTAGCTGTGGCTAAGATGTCATATCATGTACACTCTCTTGGGGAAGG 763
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATCCC-CTTGGGTTAGCTGTGGCTAAGATGTCATATCATGTACACTCTCTTGGGGAAGG 239
Query 764 GATTGTAGGACAAGTAGCAATCTCTGGACAACATCAATGGATCTTCTCTGAATATTTGAA 823
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GACTGTAGGACAAGTGGCAATCTCTGGACAACATCAATGGATCTTCTCTGAATATTTGAA 299
Query 824 TGACTCTCATTCGACACTTCAGGTTCACAACGGTTGGGAGAGTCAAATTTCTGCTGGAAT 883
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 TGACTCTCCTTCGACACTTCAGGTTCACAACGGCTGGGAGAGTCAAATTTCTGCTGGAAT 359
Query 884 TAAGACAATTCTTATAGTAGCTGTTGGTTCTTGCGGAGTTGTGCAGCTTGGCTCTTTGTG 943
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TAAGACTATTCTTATAGTAGCTGTTGGTTCTTGTGGAGTTGTGCAGCTTGGCTCTTTGTG 419
Query 944 TAAAGTTGAAGAAGACCCGGCTTTGGTGACTCATATCAGGCATTTATTTTTGGCACTTAC 1003
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 TAAAGTTGAAGAAGACCCGGCTTTGGTGACTCATATCAGGCATTTGTTTTTGGCACTTAA 479
Query 1004 GGATCCACTAGCAGACCATGCATCAAATTTAATGCAATGTGATATTAACAGTCCATCGGA 1063
||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 480 GGATCCACTGGCAGACCATGCATCAAATTCAGTGCGATGTGATATTAACAGTCCATCGGA 539
Query 1064 TCGGCCAAAAATACCTTCCAAATGCTTACATGAGGCATCCCCTGATTTCTCAGGAGAATT 1123
|| ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 540 TCTGCCAACTATACCTTCCAAATGCTTACACGAGGCATTCCCTGATTTCTCAGGAGAATT 599
Query 1124 TGACAAAGCTATGGATATGGAAGGGTTAAATATTGTATCTCAAAACACAAGTAATAGAAG 1183
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGACAAAGCTATGGATATGGGAGGGTTAAATATTGTATCTCAAAACACAAGTAATAGAAG 659
Query 1184 TAACGACCTTCCATACAATTTCACTCCAACATATTTTCACATGGAGAGGACTGCTCAAGT 1243
| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 660 TGACGACCTTCCATACAATTTCACTCCAACATATGTTCATATGGAGAGGACTGCTCAAGT 719
Query 1244 AATTGGTGGGCTTGAAGCAGTCCAACCTTCCATGTTTGGAAGCAATGATTGTGTTACAAG 1303
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 720 AATTGGTGGGCTTGAAGCAGTCCAACCTTCCATGTTTGGAAGCAATTATTGTGTTACAAG 779
Query 1304 TGGTTTTTCAGTTGGTGTGGTTGATACTAAACACAAGAATCAAGTGGATATAAGTGATAT 1363
|||||||||||||| |||||||||| |||||||| |||||||||||| ||||| ||||||
Sbjct 780 TGGTTTTTCAGTTGATGTGGTTGATGCTAAACACGAGAATCAAGTGGGTATAAATGATAT 839
Query 1364 GAGTAAGGTGATTTATGATGAGGAAACAGGTGGATACCGATACTCAAGAGAATTAGATCC 1423
||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 840 GAGTAAGGTAATTTATGATGAGGAAACTGGTGGATACCGATACTCAAGAGAATCAGATCC 899
Query 1424 CAATTTCCAACACTACTCGAGGAATCATGTGCGTAATAGTGGAGGCACATCTGCTTTAGC 1483
||||||||||| |||||||| |||||| |||||||||||| |||| |||||||||||||
Sbjct 900 TAATTTCCAACAGTACTCGAGAAATCATCTGCGTAATAGTGCAGGCTCATCTGCTTTAGC 959
Query 1484 TATGGAGAGTGATAGGCTAAAAGCAGGTTCATCATATCCACAACTTGATTCAACTGTACT 1543
||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |||| ||
Sbjct 960 AATGAAGACTGATAGGCTAAAAGCAGGTCCATCATATCCACAACTTGATTCACCTGTTCT 1019
Query 1544 TACTGCGTTGAA-AACAGATAAAGATTATTCTCGTCGAAATGAGGTTTTCCAACCATCTG 1602
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 AACTGCGTT-AATAACAGATAAAGATTATTCTCATCGAAATGAGGTTTTCCAACCATCTG 1078
Query 1603 AGAGCCAAGGAAGTATATTTGTGAAAGATACAGAACATAGGCAGGAGGAAAAAAGTGAGT 1662
|||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1079 AGAGCCAAGGAAGTATGTATGTGAAAGATACAGAACATAGGCAGGAGAAAAAAAGTGAGT 1138
Query 1663 CAAGTCAGTTGGATGCTTTAACTGCATCTTTGTGTTCTTTTTCTGGCAGTGAGCTGTTAG 1722
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1139 CAAGTCGGTTGGATGCTTTAACTGCATCTTTGTCTTCTTTTTCTGGCAGTGAGCTGCTAG 1198
Query 1723 AGGCATTAGGGCCAGCGTTCAGTAAAACAAGCACTGATTATGGGGAGCTAGCAAAGTTTG 1782
|||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||
Sbjct 1199 AGGCATTAGGGCCAGCTTTCAGTAAAACGAGCACTGGTTATGAAGAGCTAGCAAAGTTTG 1258
Query 1783 AATCTGCTGCAGCTATAAGACGAACAAATGATATGAGCCATAGTCACCTGACATTTGAAT 1842
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1259 AATCTGCTGCAGCTATAAGACGAACAAATGATATGAGCCATAGTCACCTGACATTTGACT 1318
Query 1843 CCAGCTCCGAGAATCTTCTAGATGCCGTTGTTGCTAGTATGAGTAATGGTGATGGTAATG 1902
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CCAGCCCCGAGAATCTTCTAGATGCCGTTGTTGCTAGTATGAGTAATGGTGATGGTAATG 1378
Query 1903 TCAGGCGTGAAATATCTTCAAGCAGGTCAACACAGTCATTGCTTACAACTGCTGAAATGG 1962
|||||||||||||||| ||||| |||||||| |||||||| |||||||||||| ||||||
Sbjct 1379 TCAGGCGTGAAATATCGTCAAGTAGGTCAACTCAGTCATTACTTACAACTGCTCAAATGG 1438
Query 1963 CACAGGCAGAACCTTTTGGTCATAATAAGCAAAATATTGTTAGCACAGTTGATAGTGTGA 2022
|| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1439 CAGAGGCAGAACCTTTTGGTCATAATAAGCAAAGTCTTGTTAGCACAGTTGATAGTGTGA 1498
Query 2023 TTAGCCAGCCGCC-TCTAGCAGATGGGCTTATCCAACAGAATCCATCAAATATCTGCGGA 2081
||||||||||||| || |||||| |||| ||||| ||||||||||||||||||||| |||
Sbjct 1499 TTAGCCAGCCGCCTTC-AGCAGAGGGGCGTATCCTACAGAATCCATCAAATATCTGTGGA 1557
Query 2082 GCATTTTCTTCCATTGGGTTTTCATCAACATGTCTCAGTTCATCCAGCGACCAGTTTCCG 2141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GCATTTTCTTCCATTGGGTTTTCATCAACATGTCTCAGTTCATCCAGCGACCAGTTTCCG 1617
Query 2142 ACGTCCCTGGAAATTCCCAAGAAGAACAAAAAGAGAGCTAAACCTGGTGAAAGTTCTCGG 2201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 ACGTCCCTGGAAATTCCCAAGAAGAACAAAAAGAGAGCTAAACCTGGTGAAAGTTCTCGG 1677
Query 2202 CCTCGTCCAAGGGACAGGCAACTTATTCAGGATCGTATCAAAGAACTAAGGGAGCTTGTG 2261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 CCTCGTCCAAGGGACAGGCAACTTATTCAGGATCGTATCAAAGAACTAAGGGAGCTTGTG 1737
Query 2262 CCTAATGGATCTAAGTGCAGTATTGATTCCTTGCTAGAGTGCACGATCAAGCACATGCTC 2321
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1738 CCTAATGGATCTAAGTGCAGTATTGATTCTTTGCTAGAGTGCACGATCAAGCACATGCTC 1797
Query 2322 TTCCTGCAGAGTGTCTCTCAGCATGCTGACAAGCTCACTAAAAGTGCAAGTTCAAAGATG 2381
|| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1798 TTTCTGCAGAATGTCTCTAAGCATGCCGACAAGCTCACTAAAAGTGCAAGTTCAAAGATG 1857
Query 2382 CAACACAAGGATACCGGCACCCTAGGA--ATAT--CA--AGCACTGAACAAGGTTCGAGC 2435
|| |||||||||| |||||||||||| || | || |||||||||||||||||||||
Sbjct 1858 CAGCACAAGGATAATGGCACCCTAGGATCATCTAGCACTAGCACTGAACAAGGTTCGAGC 1917
Query 2436 TGGGCAGTGGAGATTGGAGGCCATCTGCAAGTGTGCTCAATCATGGTGGAGAATCTGGAC 2495
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1918 TGGGCAGTGGAGATTGGAGGCCATCTTCAAGTGTGTTCAATCATGGTGGAGAATCTGGAC 1977
Query 2496 AAAGAAGGAGTGATGCTTATTGAGATGCTATGCGAAGAATGTAGCCACTTTCTCGAGATA 2555
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1978 AAAGAAGGAGTGATGCTTATCGAGATGTTATGCGAAGAATGTAGCCACTTTCTCGAGATA 2037
Query 2556 GCGAACGTGATAAGGAGCTTGGAACTCATCATCCTCAGAGGCACCACTGAGAAACAAGGC 2615
|| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 2038 GCAAACGTGATAAGGAGCTTGGAACTTATCATCCTCAGAGGCATCACTGAGAAACAAGGC 2097
Query 2616 GAGAAAACATGGATATGTTTTGTAGTGGAGGGACAAAACAACAAAGTAATGCACAGGATG 2675
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 GAGAAAACATGGATATGCTTTGTAGTGGAGGGACAAAACAACAAAGTAATGCACAGGATG 2157
Query 2676 GACATCCTGTGGTCTCTTGTGCAAATATTTCAACCCAAGGCTACAA 2721
||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 2158 GACATCCTGTGGTCTCTGGTGCAGATATTTCAACCCAAGGCCACAA 2203
> Ahg900935 jgi|Araly1|900935|Al_scaffold_0004_1585
Length=2163
Score = 1147 bits (621), Expect = 0.0
Identities = 1732/2248 (77%), Gaps = 157/2248 (7%)
Strand=Plus/Plus
Query 525 ATGGGTTATACCTT-GCAACAGATACTGAGGAGCATCTGCTCCAACACGGATTGGAACTA 583
||||||| || ||| ||| |||||||||||||| | ||||| |||||||| ||||||||
Sbjct 1 ATGGGTTCTA-CTTCTCAAGAGATACTGAGGAGCTTTTGCTCTAACACGGACTGGAACTA 59
Query 584 CGCCGTGTTCTGGAAACTTAATCACC-A--CTCGCCAATGGTTCTTACTTTGGAGGATG- 639
|| ||||||||| ||||||| |||| | || | |||||| ||||| ||||||||||
Sbjct 60 TGCTGTGTTCTGGCAACTTAAACACCAAGGATCTCGAATGGTACTTACCTTGGAGGATGC 119
Query 640 TGTACTGTGTTAATCATGAGCGCGGTTTGATGCCGGAAAGCTTGCATGGAGGGCGCCATG 699
| |||| || | ||| | || || | | || || |||||| | ||
Sbjct 120 T-TACTATG---ACCAT---CATGG---GA---C-G-AATATT-CATGGA----G-CA-- 156
Query 700 CTCATGACCCTCTTGGGTTAGCTGTGGCTAAGATGTCATATCATGTAC-ACTCTCTTGGG 758
|||||||| ||||||||||||||||| |||||||| |||||||| | | ||||| |||
Sbjct 157 --CATGACCCCCTTGGGTTAGCTGTGGCAAAGATGTCTTATCATGT-CTATTCTCTAGGG 213
Query 759 GAAGGGATTGTAGGACAAGTAGCAATCTCTGGACAACATCAATGGATCTTCTCTGAATAT 818
|||||||||||||||||||| ||| | |||||| |||| |||||| | ||| | ||| ||
Sbjct 214 GAAGGGATTGTAGGACAAGTCGCAGTTTCTGGAGAACACCAATGGGTATTCCCCGAAAAT 273
Query 819 T-TGAATGACTCTCATTCGA-CACTTCAGGTTCACAACGGTTGGGAGAGTCAAATTTCTG 876
| || | ||| ||| || | || || || |||| |||| ||||||||||||||||||||
Sbjct 274 TATG-ACAACTGTCACTC-AGCATTTGAGTTTCATAACGTTTGGGAGAGTCAAATTTCTG 331
Query 877 CTGGAATTAAGACAATTCTTATAGTAGCTGTTGGTTCT-TGCGGAGTTGTGCAGCTTGGC 935
||||||||||||| |||||| |||||||||||||| | | ||||| |||||||| |||
Sbjct 332 CTGGAATTAAGACCATTCTTGTAGTAGCTGTTGGT-CGATATGGAGTAGTGCAGCTAGGC 390
Query 936 TCTTTGTGTAAAGTTGAA-GAAGACCCGGCTTTGGTGACTCATAT-CAGGCATTTATTTT 993
||||||||||||||| || ||||| | |||||||| |||||| | | |||||||||
Sbjct 391 TCTTTGTGTAAAGTT-AATGAAGATGTGAATTTGGTGAATCATATGC-GACATTTATTTC 448
Query 994 TGGCACTTACGGATCCACTAGCAGACCATGCATCAAATTTAATGCAATGTGATATTAACA 1053
||||||||| ||||||| | ||||| |||||| ||||||||||||||||| |||| ||||
Sbjct 449 TGGCACTTAGGGATCCATTGGCAGATCATGCAGCAAATTTAATGCAATGTAATATGAACA 508
Query 1054 GTCCATCG-GATCGGCCAAAAATACCTTCCAAATGCTTACATG---AGGCATCCCCTGAT 1109
| | | | | || |||||| || ||||| || ||||||||| |||| | |||||||
Sbjct 509 ATTCGTTGTG-TCTGCCAAATATGCCTTCTGAAGGCTTACATGCCGAGGCTTTCCCTGAT 567
Query 1110 TTCTCAGGAGAATTTGACAAAGCTATGGATATGGAAGGGTTAAATATTGTATCTCAAAAC 1169
| ||| |||||| ||||||||||||||||| |||||| | |||||| || ||||| ||
Sbjct 568 TGCTCTGGAGAAGTTGACAAAGCTATGGATGTGGAAGAATCCAATATTTTAACTCAATAC 627
Query 1170 ACAAGTA-ATAGAAGTAACGACCTT-CCATACAATT-TCACTCCAACATATTTTCACATG 1226
| || || | |||||| | | | | || |||||| || || | ||| | || ||||
Sbjct 628 AAAACTAGA-AGAAGTGAT-AGCATGCCTTACAATACTC-CTTCGTCATGTCTTGTCATG 684
Query 1227 GAGAGGACTGCTCAAGTAATTGGTGGGCTTGAAGCAGTCCAACCTTCCATGTTTGGAAGC 1286
|||| ||| |||||||| ||||||| | ||||| || ||| || | || ||| |||
Sbjct 685 GAGAAGACAGCTCAAGTTGTTGGTGGTCGTGAAGTGGTGCAAGGATCTACGTGTGGGAGC 744
Query 1287 AATGATTG-TGTTACAAGTGGTTTTTCAGTTGG-TGTGGTTGATACTAAACACAAGAATC 1344
|| | | ||||||| |||| ||| |||||| | |||||| | | ||||| ||||||
Sbjct 745 TAT-AGCGGTGTTACATGTGGCTTTCCAGTTGACT-TGGTTGGTGCCAAACATGAGAATC 802
Query 1345 AAGT-GGATATAAGTGATA-TGAGTAAGGTGATTT-ATGATGAGGAA--AC-AGGTGGAT 1398
|||| || || || | ||| | ||| | | | | ||| || |||| || || ||| |
Sbjct 803 AAGTAGG-TACAAAT-ATAATCAGTGATGC-ACCTCATG-TG-GGAATGACTAG-TGGCT 856
Query 1399 ACCGATACTC-AAGAGAATTAGATCCCAATTTCCA-ACACTAC-TCGAGGAATCATGTGC 1455
| | | || ||||| ||||||||| ||||| || | | || | || |||||||||||
Sbjct 857 GCAAAGA-TCCAAGAGGATTAGATCCTAATTTTCATA-AGTATAT-GAAGAATCATGTGC 913
Query 1456 GT-AATAGTGGAGGCACATCTGCTTTAGCTATGGAGAG-TGATAGGCTAA-AAGCAGGTT 1512
| |||| | | || ||||||||||||| || ||| | ||| || | | || ||||
Sbjct 914 -TCAATAATACAAGCTCATCTGCTTTAGCAATTGAG-GCTGAAAGATTGATAA-CAGGC- 969
Query 1513 CA-TCATATCCACAACTTGATTCAACTGTACTTACTGCGTTGAAAACAGATAAAGATTA- 1570
|| ||||||||| || || |||||| | | || || || |||||||||||| |
Sbjct 970 CAATCATATCCAGGCCTGGACTCAACTCTTCAGGCTATGTCGAGAACAGATAAAGAA-AG 1028
Query 1571 TTCTCGTCGAAATGAGGTTTTCCAACCATCTGAGAGCCAAGGAAGTATATTTGTGAAAGA 1630
|||| || ||| || || ||||||| ||| |||| ||| |||| || | | |||||
Sbjct 1029 TTCTTATCAAAACGAAGTATTCCAACTATCGGAGAACCACGGAAATAAAGACATAAAAGA 1088
Query 1631 TACAGAACATAGGCAGGAGGAAAAAA-GTGAGTCAAGTC-AGTTGGATGCTTTAACTG-C 1687
|| || | || || || ||| || | ||||| |||| | ||| ||||||| | || |
Sbjct 1089 GACTGACCGTATGCTGG-GGAGGAACTGCGAGTCTAGTCGATTTG-ATGCTTTGA-TGTC 1145
Query 1688 ATCTTTGTGT-T-CTTTTTCTGGCAGTGAGCTGTTAGAGGCATTAGGGC-CAGCGTTCA- 1743
|||| || | | ||||| |||||| ||||| ||||||| ||||| | | || ||||
Sbjct 1146 ATCTG-GT-TATACTTTTGGTGGCAGCGAGCTACTAGAGGCGTTAGG-CTCTGCTTTCAA 1202
Query 1744 GTAAAACAAGCACTGATTATGG-GGAGCTAGCA-AAGTTTGAATC-TGCTGCAGCTATAA 1800
| || | ||||||| | | || ||||||| | |||| |||| | || | || | || |
Sbjct 1203 GCAAG-CGAGCACTGGTCA-GGAGGAGCTA-CTGAAGTCTGAA-CATGGTTCAACAATGA 1258
Query 1801 GACGAACAAATGATATGAGCCATAGTCACCTGACATTTGAATCCAGCTCC-GAGAATCTT 1859
||| |||| |||||||||| ||||| || ||||||||||| || || || |||||||||
Sbjct 1259 GACCAACAGATGATATGAGTCATAGCCAGCTGACATTTGACTCTGGC-CCTGAGAATCTT 1317
Query 1860 CTAGATGCCGTTGTTGCTAGTATGAGT-AATGGTGATGGTAATGTC-AGGCG-TGAAATA 1916
|||||||| || ||||||| | || || || | ||||||||| || ||| | ||| ||
Sbjct 1318 CTAGATGCTGTGGTTGCTAATGTGTGTCAAAGC-GATGGTAAT-TCCAGG-GATGATATG 1374
Query 1917 TCT-TCAAGCAGGTCAACACAGTCATTGCTTACAACTGCTGAAATGGCACAGGCAGAACC 1975
| | || ||||| || ||| ||||||||||| | || | ||| || ||||||||
Sbjct 1375 T-TGTCGAGCAGATCGGTACAATCATTGCTTACCA--GC--A--TGGAACTTGCAGAACC 1427
Query 1976 TTTTGGTCATAATAAGCAAAATATTGTT-AGCACAGTTGATAGTG-TGATTAGCCAGCCG 2033
| ||||| || ||||| ||||||||| | | || ||||||||| | || | ||||
Sbjct 1428 CTCAGGTCAAAAGAAGCATAATATTGTTTACC-CAATTGATAGTGCT-ATGAATCAGCTA 1485
Query 2034 CCTCTAGCAGATG-GGCTTATCCAACAGAATCCATCAAATATCTGCGGAGCATTTTCTTC 2092
|| || ||||| | || | |||||||| ||| ||||| ||||||| ||||||||||||||
Sbjct 1486 CCACTTGCAGAGGTGGAT-ATCCAACAAAATTCATCAGATATCTGTGGAGCATTTTCTTC 1544
Query 2093 CATTGGGTTTTCATCAACATGTCTCAGTTCATCCAGCGACCAGTTTCCGACGTCCCTGGA 2152
|||||||| ||||| || | || ||| || || || || ||||||| ||| ||||||||
Sbjct 1545 GATTGGGTTCTCATCTACGTATCCCAGCTCCTCTAGTGATCAGTTTCAGACATCCCTGGA 1604
Query 2153 AATTCCCAAGAAGAACAAAAAGAGAGCTAAACCTGGTGAAAGTTCTCGGCCTCGTCCAAG 2212
|| |||||||||||||||||||| || || ||||||||||||||||| ||||| |||||
Sbjct 1605 CATGCCCAAGAAGAACAAAAAGAGGGCCAAGCCTGGTGAAAGTTCTCGACCTCGCCCAAG 1664
Query 2213 GGACAGGCAACTTATTCAGGATCGTATCAAAGAACTAAGGGAGCTTGTGCCTAATGGATC 2272
||||| ||||| ||||||||||| ||||| ||||| || || ||||| ||||||||| |
Sbjct 1665 AGACAGACAACTCATTCAGGATCGAATCAAGGAACTTAGAGAACTTGTACCTAATGGAGC 1724
Query 2273 TAAGTGCAGTATTGATTCCTTGCTAGAGTGCACGATCAAGCACATGCTCTTCCTGCAGAG 2332
|||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||
Sbjct 1725 TAAGTGCAGTATTGATTCTTTGCTCGAACGCACGATCAAGCACATGCTCTTTTTGCAGAA 1784
Query 2333 TGTCT-CTCAGCATGCTGACAAGCTCACTAAAAGTGC-AAGTTCAAAGATGCAACACAAG 2390
||| | || |||||||||||||||||| ||||||||| || | ||||||||||||| |||
Sbjct 1785 TGT-TACTAAGCATGCTGACAAGCTCAGTAAAAGTGCTAA-TGCAAAGATGCAACAAAAG 1842
Query 2391 GATACCGGCACCCTAGGAATATCAAGCACTGAACAAGGTTCGAGCTGGGCAGTGGAGATT 2450
|| | || | || ||| ||| | ||||| ||||| ||||||||| ||
Sbjct 1843 GA-A-----AC--T-GG--TAT---GCA---A----GGTTCAAGCTGCGCAGTGGAGGTT 1881
Query 2451 GGAGGCCATCTGCAAGTGTGCTCAATCATGGTGGAGAATCTGGACAAAGAAGGAG-TGAT 2509
||||||||||| ||||| ||||| ||||| |||||||||||| |||| | ||| | || |
Sbjct 1882 GGAGGCCATCTTCAAGTATGCTCGATCATCGTGGAGAATCTGAACAA-GCAGGGGATGGT 1940
Query 2510 GCTTATTGAGATGCTATGCGAAGAATGTAGCCACTTTCTCGAGATAGCGAACGTGATAAG 2569
||| || |||||| |||| |||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 1941 GCTCATCGAGATGTTATGTGAAGAATGTAGCCATTTTCTTGAGATAGCAAACGTGATTAG 2000
Query 2570 GAGCTTGGAACTCATCATCCTCAGAGGCACCACTGAGAAACAAGGCGAGAAAACATGGAT 2629
|||||| || ||||||||| | ||||| | ||| |||| || |||||||||||||||||
Sbjct 2001 GAGCTTAGACCTCATCATCTTAAGAGGAATCACCGAGACTCAGGGCGAGAAAACATGGAT 2060
Query 2630 ATGTTTTGTAG-TGGAGGGACAAAACAACAAAGTAATGCACAGGATGGACATCCTGTGGT 2688
||| |||||| || || | ||||||| |||||||||||| ||||||||||| ||||||
Sbjct 2061 ATGCTTTGTAACTG-AGAGCCAAAACAGCAAAGTAATGCAGAGGATGGACATTTTGTGGT 2119
Query 2689 CTCTTGTGCAAATATTTCAACCCAAGGC 2716
|||| ||||||||||||||||| |||||
Sbjct 2120 CTCTGGTGCAAATATTTCAACCAAAGGC 2147
> Ahg919325 jgi|Araly1|919325|scaffold_100606.1
Length=206
Score = 233 bits (126), Expect = 5e-60
Identities = 128/129 (99%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 248 GAAAGGAATGGGCACTAGGCAGTATTCACTGGGAGAAGTAGGGCCACCAATAAATCCGAG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 GAAAGGAATGGGCACTAGGCAGTATTCACTGGGAGAAGTAGGGCCACCAATAAATCCGAG 133
Query 308 AGCTGGATTGCGAAGGGAACAAGCTGGTAGAGGTTCATACAGAGGTAGTTAGTAGATTCG 367
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 AGCTGGATTGCGAAGAGAACAAGCTGGTAGAGGTTCATACAGAGGTAGTTAGTAGATTCG 193
Query 368 TAGCTCATC 376
|||||||||
Sbjct 194 TAGCTCATC 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112061500790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5