BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06160.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470633 jgi|Araly1|470633|fgenesh2_kg.1__587__AT1G06160.1 1206 0.0
> Ahg470633 jgi|Araly1|470633|fgenesh2_kg.1__587__AT1G06160.1
Length=851
Score = 1206 bits (653), Expect = 0.0
Identities = 810/879 (92%), Gaps = 37/879 (4%)
Strand=Plus/Plus
Query 1 AATAAGAAAACCGTTAACAAG-AAGaaaaaaaaaaGATCGAAAATGGAATATCAAACTAA 59
||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||| ||
Sbjct 1 AATAAGAAAACCGTTAAGAAGAAAGAAAAAAAGAAGATTGAAAATGGAATATCAAAATAC 60
Query 60 CTTCTTAAGTGGAGAGTTTTCCCCGGAGAACTCTTCTTCAAGCTCATGGAGCTCACAAGA 119
|||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCTTAAGTAAAGAGTTCTCCGGGGAGAACTCTTCTTCAAGCTCATGGAGCTCACAAGA 120
Query 120 ATCATTCTTGTGGGAAGAGAGTTTCTTACATCAATCATTTGACCAATCCTTCCTTTTATC 179
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 ATCATTCTTGTGGGAAGATAGTTTCTTACATCAATCATTTGATCAATCCTTCCTTTTATC 180
Query 180 TAGCCCTACTGATAACTACTGTGATGACTTCTTTGCATTTGAATCATCAATCATAAAAGA 239
|| ||||||| | |||||| |||||||||||||||||||||| || ||||||| |||||
Sbjct 181 TACCCCTACT--T-ACTACTCTGATGACTTCTTTGCATTTGAACCACCAATCATCAAAGA 237
Query 240 AGAAGGAAAAGAAGCCACCGTGGCGGCCGAGGAGGAGGAGAAGTCATACAGAGGAGTGAG 299
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGAA-G--AAGAAGCCACCGTGGCGGCCGAGGAGGAGGAGAAGTCATACAGAGGAGTGAG 294
Query 300 GAAACGGCCGTGGGGGAAAT-TCGCGGCCGAGATAAGAGACTCAACGAGGAAAGGGATAA 358
|||||||||||||||||| | | ||||||||||||||||| |||||||||||||||||||
Sbjct 295 GAAACGGCCGTGGGGGAAGTAT-GCGGCCGAGATAAGAGATTCAACGAGGAAAGGGATAA 353
Query 359 GAGTGTGGCTTGGGACATTCGACACCGCGGAGGCGGCGGCTCTCGCTTATGATCAGGCGG 418
|||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 354 GAGTGTGGCTAGGGACATTCGACACCGCGGAGGAGGCGGCTCTCGCTTATGACCAGGCGG 413
Query 419 CTTTCGCTTTGAAAGGCAGCCTCGCAGTACTCAATTTCCCCGCGGATGTCGTTGAAGAAT 478
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 414 CTTTCGCTTTGAAAGGCAGCCTCGCAGTACTCAATTTCCCCGTGGATGTCGTTGAAGAGT 473
Query 479 CTCTCCGGAAGATGGAGAATGTGAATCTCAATGATGGAGAGTCTCCGGTGATAGCCTTGA 538
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 474 CTCTCCGGAAGATGGAGAATGTGAATCTCAACGATGGAGAGTCTCCGGTGATTGCCTTGA 533
Query 539 AGAGAAAACACTCCATGAGAAACCGTCCTAGAGGAAAGAAGAAAtcttcttcttcttcga 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGAGAAAACACTCCATGAGAAACCGTCCTAGAGGAAAGAAGAAATCTTCTTCTTCTTCGA 593
Query 599 cgttgacatcttctccttcttcctcctcctcctattcatcttcttcgtcttcttcttctt 658
||||||||||||||||||||||||||| | | || || | |||||||||| |
Sbjct 594 CGTTGACATCTTCTCCTTCTTCCTCCT------A--C-TCGTC--C-TCTTCTTCTT-T- 639
Query 659 TGTCGTCAAGAAGTAGAAAACAGAGTGTTGTTATGACGCAAGAAAGTAATACAACACTTG 718
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 -GTCGTCAAGAGGTAGAAAACAGAGTGTTGTTATGACGCAAGAAAGTAATACAACACTTG 698
Query 719 TGGTTCTTGAGGATTTAGGTGCTGAATACTTAGAAGAGCTTATGAGATCATGTTCTTGAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 699 TGGTTCTTGAGGATTTAGGTGCTGAATACTTAGAAGAGCTTATGAGATCATGTTCATGAT 758
Query 779 AATCTCTGCTTCTACAATTTTTATGTAATTT-----GAGTGAGCTCTG-ttt-ttttAAG 831
|||||| ||||||||||||||||||||||| |||||||||||| ||| |||| |
Sbjct 759 CATCTCTACTTCTACAATTTTTATGTAATTTAATTTGAGTGAGCTCTGGTTTGTTTTTA- 817
Query 832 AAAAAATCCGTTGAAAAGTTTTGGAAGAGATGTGATGGC 870
| |||||||||||||||||||||||||||||||||
Sbjct 818 A-----TCCGTTGAAAAGTTTTGGAAGAGATGTGATGGC 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5