BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06170.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333922 jgi|Araly1|333922|fgenesh1_pg.C_scaffold_1000487 1925 0.0
> Ahg333922 jgi|Araly1|333922|fgenesh1_pg.C_scaffold_1000487
Length=1266
Score = 1925 bits (1042), Expect = 0.0
Identities = 1192/1266 (94%), Gaps = 3/1266 (0%)
Strand=Plus/Plus
Query 130 ATGGGAGGAGGAGGCATGTTTGAAGAAATTGGGTGTTTTGATCCAAATGCTCCGGCAGAA 189
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGGAGGAGGCATGCTTGAAGAAATTGGGTGTTTTGATCCAAATGCTCCGGCAGAA 60
Query 190 ATGACTGCTGAGAGCAGTTTCTCTCCGTCCGAGCCACCACCGACGATCACGGTCATCGGT 249
||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 61 ATGACGGCTGAGAGCAGTTTCTCTCCGGCTGAGCCACCACCGACGATCACGGTGGTCGGT 120
Query 250 AGCAACAGTAACAGCAACTGCAGTCTAGAAGATCTCTCTGCATTCCACCTCAGCCCACAA 309
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 AGCAACAGCAACAGCAACTGCAGTCTAGAAGATCTCTCTGAATTCCACCTCAGCCCACAA 180
Query 310 GACTCTTCTCTACCTGCCTCAGCCTCAGCTTATGCTCATCAGCTTCACATTAATGCTACT 369
||||||||||||||| |||||||||||||||||| ||||||| ||||| | ||||||||
Sbjct 181 GACTCTTCTCTACCTACCTCAGCCTCAGCTTATGTTCATCAGTTTCACGTCAATGCTACG 240
Query 370 CCTAATTGTGATCATCAATTCCAGAGTTCAATGCACCAAACCCTCCAAGATCCATCGTAT 429
||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||
Sbjct 241 CCTAATTGTGATCATCAATTCCAGAGTTCGATGCACCAAACCCTTCAAGGTCCATCGTAT 300
Query 430 GCGCAACAGTCGAATCATTGGGACAATGGTTACCAAGATTTTGTGAATTTGGGTCCTAAT 489
| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 CCACAACAGTCGAATAATTGGGACAATGGTTACCAAGATTTTGCGAATTTGGGTCCTAAT 360
Query 490 CATACCACTCCTGACCTACTCAGTCTCTTGCAATTGCCAAGATCCTCACTTCCACCTTTC 549
||||| |||||||||||||| |||||||||||||| ||||||||||||||||| || |||
Sbjct 361 CATACAACTCCTGACCTACTTAGTCTCTTGCAATTACCAAGATCCTCACTTCCGCCATTC 420
Query 550 GCAAACCCTAGCATTCAAGACATTATCATGACAACATCTTCCTCTGTCGCCGCCTATGAC 609
|||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 421 GCAAACCCTAGCCTTCAAGATATTATCATGACAACATCTTCCTCTGTTGCCGCCTATGAC 480
Query 610 CCGCTCTTCCATCTGAATTTTCCTCTGCAGCCTCCTAATGGGAGTTTCATGGGAGTGGAT 669
||||||||||| |||||||| ||| |||||||||||||||||| |||||| ||||| |||
Sbjct 481 CCGCTCTTCCACCTGAATTTCCCTTTGCAGCCTCCTAATGGGACTTTCATAGGAGTTGAT 540
Query 670 CAAGATCAAACTGAG--A-CTAACCAAGGAGTGAACTTGATGTATGATGAAGAAAACAAC 726
||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 541 CAAGATCAAACTGAGATAGAAAACCAAGGAGTGAATTTGATGTATGATGAAGAAAACAAC 600
Query 727 AACCTCGACGATGGTCTTAACCGTAAAGGCAGAGGATCGAAAAAGCGTAAAATTTTCCCT 786
||||| ||| ||||||| ||||||||||| |||||||||| |||||| ||| ||||||||
Sbjct 601 AACCTAGACAATGGTCTAAACCGTAAAGGGAGAGGATCGAGAAAGCGGAAAGTTTTCCCT 660
Query 787 ACAGAACGCGAGAGAAGAGTTCACTTCAAAGACCGGTTTGGTGACTTAAAGAATCTAATT 846
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACTGAACGCGAGAGAAGAGTTCACTTCAAAGACCGGTTTGGTGACTTAAAGAATCTAATT 720
Query 847 CCAAATCCCACCAAGAATGATAGAGCATCAATCGTCGGAGAAGCGATAGATTACATCAAA 906
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCAAATCCTACCAAGAATGATAGAGCATCAATCGTCGGAGAAGCGATAGATTACATCAAA 780
Query 907 GAGTTGCTAAGGACGATCGATGAGTTCAAGCTGCTAGTGGAAAAGAAGAGAGTGAAACAG 966
|||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 781 GAGTTGTTAAGGACGATCGATGAGTTCAAGCTGCTAGTGGAAAAGAAAAGAACAAAACAG 840
Query 967 AGGAACAGAGAAGGAGATGATGTTGTTGATGAGAACTTCAAGGCTCAAAGCGAAGTAGTA 1026
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 841 CGGAACAGAGAAGGAGATGATGTTATTGATGAGAACTTCAAGGCTCAAAGCGAAGTAGTA 900
Query 1027 GAACAATGTTTGATCAATAAGAAGAACAATGCCTTGAGATGCTCATGGCTCAAGAGGAAA 1086
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 GAACAATGTTTGATCAATAAGAAGAACAATGCCTTGAGATGCTCATGGCTGAAGAGGAAA 960
Query 1087 TCGAAATTCACTGATGTCGATGTACGTATCATAGACGATGAAGTTACCATCAAGATCGTG 1146
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 961 TCGAAATTCACTGAGGTCGATGTACGTATCATAGACGATGACGTAACCATCAAGATCGTG 1020
Query 1147 CAGAAGAAGAAAATCAATTGTTTGTTGTTCGTATCCAAAGTCGTTGACCAACTTGAGCTT 1206
|||||||||||||||||||||||| | || |||||||||||||||||||| ||| |||||
Sbjct 1021 CAGAAGAAGAAAATCAATTGTTTGGTCTTTGTATCCAAAGTCGTTGACCAGCTTCAGCTT 1080
Query 1207 GATCTTCACCATGTAGCTGGTGCACAAATCGGAGAGCACCACAGTTTCTTGTTCAACGCC 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GATCTTCACCATGTAGCTGGTGCACAAATCGGAGAGCACCACAGTTTCTTGTTCAACGCC 1140
Query 1267 AAGATTAGTGAAGGATCTAGTGTTTATGCAAGTGCCATAGCAGATAGAGTAATGGAAGTG 1326
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAGATTTGTGAAGGATCTAGTGTTTATGCAAGTGCCATAGCAGATAGAGTAATGGAAGTG 1200
Query 1327 TTGAAGAAACAATACATGGAAGCTCTTTCGGCGAATAATGGTTATCACTGTTACTCTAGT 1386
||| |||||||||||||||||||||||||| | |||||||| |||||||| ||||| |||
Sbjct 1201 TTGGAGAAACAATACATGGAAGCTCTTTCGACCAATAATGGCTATCACTGCTACTCCAGT 1260
Query 1387 GATTAA 1392
||||||
Sbjct 1261 GATTAA 1266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5