BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06180.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470636 jgi|Araly1|470636|fgenesh2_kg.1__590__AT1G06180.1 1190 0.0
> Ahg470636 jgi|Araly1|470636|fgenesh2_kg.1__590__AT1G06180.1
Length=861
Score = 1190 bits (644), Expect = 0.0
Identities = 762/816 (93%), Gaps = 19/816 (2%)
Strand=Plus/Plus
Query 103 ATGGGGAGAAGACCATGCTGTGAGAAGATAGGATTGAAGAAAGGGCCATGGAGTGCTGAA 162
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 59 ATGGGAAGAAGACCATGCTGTGAGAAAATAGGATTGAAGAAAGGGCCATGGAGTGCTGAA 118
Query 163 GAAGATCGAATCTTGATCAATTATATTAGTCTCCATGGCCATCCCAATTGGAGAGCTCTC 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GAAGATCGAATCTTGATCAATTATATTAGTCTCCATGGCCATCCCAATTGGAGAGCTCTC 178
Query 223 CCTAAACTAGCCGGGCTACTTCGGTGCGGAAAAAGTTGCAGGCTTCGTTGGATTAATTAT 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CCTAAACTAGCCGGGCTACTTCGGTGCGGAAAAAGTTGCAGGCTTCGTTGGATTAATTAT 238
Query 283 TTGAGACCAGACATCAAACGTGGCAATTTCACTCCTCATGAAGAAGATACTATCATCAGC 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 TTGAGACCAGACATCAAACGTGGCAATTTCACTCCTCATGAAGAAGATACTATCATCAAC 298
Query 343 TTACATCAACTCTTAGGCAACAGATGGTCTGCGATAGCTGCAAAATTGCCTGGACGAACA 402
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 299 TTACATCAAATCTTAGGCAACAGATGGTCTGCGATAGCTGCAAAATTGCCAGGACGAACA 358
Query 403 GACAACGAAATTAAAAATGTTTGGCACACTCATTTAAAGAAAAGACTCCACCACAGTCAA 462
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 359 GACAACGAAATTAAAAATGTTTGGCACACTCATTTAAAGAAAAGACTCCACCATAATCAA 418
Query 463 GATCAAAACAACAAGGAAGATTTCGTCTCTACTACAGCTGCGGAGATGCCAACCTCTCCG 522
|||||||| ||||||||| ||||||||||||||||||||||||||| || | |
Sbjct 419 GATCAAAATAACAAGGAAAATTTCGTCTCTACTACAGCTGCGGAGAGGC-----T----G 469
Query 523 CAACAACAATCTAGTAGTAGTGCCGACATTTCAGCAATTACAACATTGGGAAACAACAAT 582
|||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||| ||
Sbjct 470 CAACAACAATCTAGCAGTAGCGCCGACATTTCAGAAATTACAACATCGGGAAACAATAAC 529
Query 583 GACATCTCCAATAGCAACAAAGACTCCGCGACGTCATCCGAAGATGTTCTTGCAATTATA 642
||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 530 GACATCTCCAATAACAACAAAGACTCTGCGACGTCATCCGAAGATGTTCTTGCAGTTATA 589
Query 643 GATGAGAGCTTTTGGTCAGAAGTGGTATTGATGGACTGTGACATTTCAGGAAATG---AG 699
||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||
Sbjct 590 GATGAGAGCTTTTGGTCAGAAGTCGTATTGATGGACTGTAACATTTCAGGAGATGGTGAG 649
Query 700 AAGAATGAGAAAAAGATAGAGAATTGGGAGGGCTCACTAGATAGAAACGATAAGGGATAT 759
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 650 AAGAATGAGAAAAAGATAGAGAATTGGGAGGGCTCATTAGATAAAAATGATAAGGGATAT 709
Query 760 AACCATGACATGGAGTTTTGGTTTGACCATCTCACTAGTAGTAGTTGTATAATTGGAGAA 819
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 710 AACCATGACATGGAGTTTTGGTTTGACCATCTCACTAGTAGTCGT---ATAGTTGGAGAA 766
Query 820 ATGTCCGACATTTCTGAGTTTTGATTTGTTTTAGTTAAAGACTTATATAT-C-TTCC-TT 876
|| | ||||||||||||||||||||||||||||||||| ||||||||| | | || ||
Sbjct 767 ATTTGCGACATTTCTGAGTTTTGATTTGTTTTAGTTAA-GACTTATATCTTCCTTTAATT 825
Query 877 TGTGACCCACATGAATAAAAGTCGTTTACGTTTCCT 912
||| ||||||||||||||| |||||||||| |||||
Sbjct 826 TGTAACCCACATGAATAAATGTCGTTTACGCTTCCT 861
Score = 60.2 bits (32), Expect = 3e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 44 CTTCTTCCATTTCTTCTTTCTCTCCTCGTTTAAAT 78
|||| ||||||||||||||||||||||||||||||
Sbjct 26 CTTCCTCCATTTCTTCTTTCTCTCCTCGTTTAAAT 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5