BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06190.1 Length=1470 Score E Sequences producing significant alignments: (Bits) Value Ahg919332 jgi|Araly1|919332|scaffold_100613.1 1770 0.0 > Ahg919332 jgi|Araly1|919332|scaffold_100613.1 Length=1246 Score = 1770 bits (958), Expect = 0.0 Identities = 1149/1237 (93%), Gaps = 30/1237 (2%) Strand=Plus/Plus Query 53 TGCTCCTGAAGTCTGTTCATGGCGATGTCGGGAACTTTCCATTTGACTTCTGACTATGTC 112 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 TGCTCCTGAAGTCTGTTCATGGCGATGTCGGGAACTTTCCATTTGACTTCTGACTATGTC 62 Query 113 CCTGGTTACACACTTTCAGACAGCCGTTGCTTCTTTAACTCTGCTGTTTCAAGAAGAACA 172 |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| || Sbjct 63 CCTGGTTACACACTTTCAGACAGCCGTTCCTTCTCTACCTCTGCTGTTTCAAGAAGAGCA 122 Query 173 CTTGCCATATTACCTTGCTCTTCCTGTCTCGATCACAAGAATGGGCGTCTGAAATCTGTC 232 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 123 CTTGCCATCTTACCTTGCTCTTCCTGTCTGGATCACAAGAATGGGCGTCTGAAATCTGTC 182 Query 233 CCCAATA-GAAGTTCTTTTGTGTGCCGAGCAAGTTCTGGCGGCTATAGGAGAAATCCTGA 291 || ||| ||| | ||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 183 TCCGATAAGAA-TGCTTTTCTATGCCGAGCAAGTTCTGGCGGCTATAGGAGAAATCCTGA 241 Query 292 TTTCTCAAGACTTAATAAGCATGGTTACCGGGGAAACAACAGGCAAAGCGGAGGGAGAGA 351 |||||||||||||||||||||||||| |||||| |||||||||||||| | ||||||||| Sbjct 242 TTTCTCAAGACTTAATAAGCATGGTTTCCGGGGGAACAACAGGCAAAGTGAAGGGAGAGA 301 Query 352 AGATTTTGATATCGAAAACTCTGATATGTTGTCTTCAAGAAATGGGCCTTTATTCAAC-C 410 ||| | ||||||||||||||||||||||||||||| |||||||||||||||||| | | Sbjct 302 CGATCTCGATATCGAAAACTCTGATATGTTGTCTTCGAGAAATGGGCCTTTATTCT-CTC 360 Query 411 TGTCTAGTTCCCCCAAATTCCAAGCTACCTCATCCCCTGGACCTAGAGAGAAAGAGATCG 470 ||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| | Sbjct 361 TGTCTAGCTCCCCCAAATTCCAAGCTATATCATCCCCTGGACCAAGAGAGAAAGAGATAG 420 Query 471 TGGAGCTTTTCAGAAAGGTTCAAGCTCAGCTCCGAGCTCGTGCTGCAGCaaagaaagaag 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 TGGAGCTTTTCAGAAAGGTTCAAGCTCAGCTCCGAGCTCGTGCTGCAGCAAAGAAAGAAG 480 Query 531 aaaaaaagattgaagaagcttctaaagggcagggaaaagaaagtgaaaCTGTTGACTCTC 590 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 481 AAAAAAAGATTGAAGAATCTTCTAAAGGGCAGGGAAAAGAAAGTGAAACTGTTGACTCCC 540 Query 591 TTCTTAAGTTACTAAGGAAGCACTCGGGAGAGCAAAGCAAGAGGCAAGTTAGCAAATTTA 650 ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 541 TTCTTAAGTTACTAAGGAAACACTCGGGAGAGCAAAGCAAGAAGCAAGTTAGCAAATTTA 600 Query 651 GCAGCCAGGGAGAAGTACAAGGAGATACTGTTGACAAACAAGATCGCACCGGAAATCTTG 710 ||||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||| Sbjct 601 GCAGCCAGGGAGAAGTACAAGAAGATACTGTCGACAAACAAAATCGCAATGGAAATCTTG 660 Query 711 TCACTTCAGGGAACAAAGATAATAATGCATCATCCTTTACCAGACCAACATCAAGCTTCA 770 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TCAATTCAGGGAACAAAGATAATAATGCATCATCCTTTACCAGACCAACATCAAGCTTCA 720 Query 771 GAAGAAAGTCGCCAGTACCAAGATCTCAATCACCGCCAGCTTATTCTAGCGAGGCAACTT 830 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 721 GAAGAAAGTCGCCAGTACCAAGATCTAAATCACCGCCAGCTTATTCTAGCGAGGCAACTT 780 Query 831 TTGATCAATCATCAAGTTACAGTGTAACCTGGACCCAGAAGAAGGATACAGTAGAGTTGC 890 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 781 TTGATCAATCATCGAGTTACAGCGTAACCTGGACCCAGAAGAAGGATACAGTAGAGTTGC 840 Query 891 ATGATGAGCCTGAACATGAGCCTGCGTATGAGCATGAGC---A-T--GAGC-C-----TG 938 | |||||||||||||||||||||| | |||||||||||| | | |||| | || Sbjct 841 AGGATGAGCCTGAACATGAGCCTGAGAATGAGCATGAGCCTGAGTACGAGCACGAACCTG 900 Query 939 AAAATGAGTCAGAACCTGGGCCTGTGACAACTATGCTTGAACCAGATTCAGAGCTGAAAC 998 ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | Sbjct 901 AAAATGAGTCAGAACCTGGGCCTGTGACAACTATGCTTGAAACAGAGTCAGAGCTGAAGC 960 Query 999 CAGAGTCATCATCATT-TTATCAAGAGGAGGAGGATGATGATGTTACTTTTGATGTGTTA 1057 |||| ||||||||||| || ||||||||||||||||||||| || ||||| | | | Sbjct 961 CAGATTCATCATCATTGTT-TCAAGAGGAGGAGGATGATGAAGTGACTTT--A-G----A 1012 Query 1058 TCACAGGATGATGGTATTTTAGATGTGTTATCAGATGATGATGAGTCTCTCGATGATGCT 1117 | | |||| ||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 1013 T----G-ATGACGGTATTTTAGATGTGTTTTCAGATGATGATGAGTCTCACGATGATGCT 1067 Query 1118 GATGAAGATAGTGATGAAGCTGAGGAAGAAGCCGTGAAAGACTTGAGTGAATTGAAGCTG 1177 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1068 GATGAAGATAGTGATGAAGCTGAGGAAGAAGCCGTGAAAGACTTGAGTAAACTGAAGCTG 1127 Query 1178 GTCGAACTTAGAGGCATAGCAAAGTCACGGGGACTAAAAGGGTTGTCAAAGATGAAGAAA 1237 | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1128 ATGGAACTTAGAGGCATAGCAAAGTCACGGGGACTAAAAGGGTTTTCAAAGATGAAGAAA 1187 Query 1238 GCCGAATTAGTGGAGTTGCTTGGTAGTGATTCCAGCT 1274 |||||| |||||||||||||||||||| |||| |||| Sbjct 1188 GCCGAACTAGTGGAGTTGCTTGGTAGTAATTCTAGCT 1224 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55002313780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5