BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06190.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919332 jgi|Araly1|919332|scaffold_100613.1 1770 0.0
> Ahg919332 jgi|Araly1|919332|scaffold_100613.1
Length=1246
Score = 1770 bits (958), Expect = 0.0
Identities = 1149/1237 (93%), Gaps = 30/1237 (2%)
Strand=Plus/Plus
Query 53 TGCTCCTGAAGTCTGTTCATGGCGATGTCGGGAACTTTCCATTTGACTTCTGACTATGTC 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TGCTCCTGAAGTCTGTTCATGGCGATGTCGGGAACTTTCCATTTGACTTCTGACTATGTC 62
Query 113 CCTGGTTACACACTTTCAGACAGCCGTTGCTTCTTTAACTCTGCTGTTTCAAGAAGAACA 172
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||
Sbjct 63 CCTGGTTACACACTTTCAGACAGCCGTTCCTTCTCTACCTCTGCTGTTTCAAGAAGAGCA 122
Query 173 CTTGCCATATTACCTTGCTCTTCCTGTCTCGATCACAAGAATGGGCGTCTGAAATCTGTC 232
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 123 CTTGCCATCTTACCTTGCTCTTCCTGTCTGGATCACAAGAATGGGCGTCTGAAATCTGTC 182
Query 233 CCCAATA-GAAGTTCTTTTGTGTGCCGAGCAAGTTCTGGCGGCTATAGGAGAAATCCTGA 291
|| ||| ||| | ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 183 TCCGATAAGAA-TGCTTTTCTATGCCGAGCAAGTTCTGGCGGCTATAGGAGAAATCCTGA 241
Query 292 TTTCTCAAGACTTAATAAGCATGGTTACCGGGGAAACAACAGGCAAAGCGGAGGGAGAGA 351
|||||||||||||||||||||||||| |||||| |||||||||||||| | |||||||||
Sbjct 242 TTTCTCAAGACTTAATAAGCATGGTTTCCGGGGGAACAACAGGCAAAGTGAAGGGAGAGA 301
Query 352 AGATTTTGATATCGAAAACTCTGATATGTTGTCTTCAAGAAATGGGCCTTTATTCAAC-C 410
||| | ||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 302 CGATCTCGATATCGAAAACTCTGATATGTTGTCTTCGAGAAATGGGCCTTTATTCT-CTC 360
Query 411 TGTCTAGTTCCCCCAAATTCCAAGCTACCTCATCCCCTGGACCTAGAGAGAAAGAGATCG 470
||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 361 TGTCTAGCTCCCCCAAATTCCAAGCTATATCATCCCCTGGACCAAGAGAGAAAGAGATAG 420
Query 471 TGGAGCTTTTCAGAAAGGTTCAAGCTCAGCTCCGAGCTCGTGCTGCAGCaaagaaagaag 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGAGCTTTTCAGAAAGGTTCAAGCTCAGCTCCGAGCTCGTGCTGCAGCAAAGAAAGAAG 480
Query 531 aaaaaaagattgaagaagcttctaaagggcagggaaaagaaagtgaaaCTGTTGACTCTC 590
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 AAAAAAAGATTGAAGAATCTTCTAAAGGGCAGGGAAAAGAAAGTGAAACTGTTGACTCCC 540
Query 591 TTCTTAAGTTACTAAGGAAGCACTCGGGAGAGCAAAGCAAGAGGCAAGTTAGCAAATTTA 650
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 541 TTCTTAAGTTACTAAGGAAACACTCGGGAGAGCAAAGCAAGAAGCAAGTTAGCAAATTTA 600
Query 651 GCAGCCAGGGAGAAGTACAAGGAGATACTGTTGACAAACAAGATCGCACCGGAAATCTTG 710
||||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||
Sbjct 601 GCAGCCAGGGAGAAGTACAAGAAGATACTGTCGACAAACAAAATCGCAATGGAAATCTTG 660
Query 711 TCACTTCAGGGAACAAAGATAATAATGCATCATCCTTTACCAGACCAACATCAAGCTTCA 770
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCAATTCAGGGAACAAAGATAATAATGCATCATCCTTTACCAGACCAACATCAAGCTTCA 720
Query 771 GAAGAAAGTCGCCAGTACCAAGATCTCAATCACCGCCAGCTTATTCTAGCGAGGCAACTT 830
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 GAAGAAAGTCGCCAGTACCAAGATCTAAATCACCGCCAGCTTATTCTAGCGAGGCAACTT 780
Query 831 TTGATCAATCATCAAGTTACAGTGTAACCTGGACCCAGAAGAAGGATACAGTAGAGTTGC 890
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 TTGATCAATCATCGAGTTACAGCGTAACCTGGACCCAGAAGAAGGATACAGTAGAGTTGC 840
Query 891 ATGATGAGCCTGAACATGAGCCTGCGTATGAGCATGAGC---A-T--GAGC-C-----TG 938
| |||||||||||||||||||||| | |||||||||||| | | |||| | ||
Sbjct 841 AGGATGAGCCTGAACATGAGCCTGAGAATGAGCATGAGCCTGAGTACGAGCACGAACCTG 900
Query 939 AAAATGAGTCAGAACCTGGGCCTGTGACAACTATGCTTGAACCAGATTCAGAGCTGAAAC 998
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 901 AAAATGAGTCAGAACCTGGGCCTGTGACAACTATGCTTGAAACAGAGTCAGAGCTGAAGC 960
Query 999 CAGAGTCATCATCATT-TTATCAAGAGGAGGAGGATGATGATGTTACTTTTGATGTGTTA 1057
|||| ||||||||||| || ||||||||||||||||||||| || ||||| | | |
Sbjct 961 CAGATTCATCATCATTGTT-TCAAGAGGAGGAGGATGATGAAGTGACTTT--A-G----A 1012
Query 1058 TCACAGGATGATGGTATTTTAGATGTGTTATCAGATGATGATGAGTCTCTCGATGATGCT 1117
| | |||| ||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1013 T----G-ATGACGGTATTTTAGATGTGTTTTCAGATGATGATGAGTCTCACGATGATGCT 1067
Query 1118 GATGAAGATAGTGATGAAGCTGAGGAAGAAGCCGTGAAAGACTTGAGTGAATTGAAGCTG 1177
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1068 GATGAAGATAGTGATGAAGCTGAGGAAGAAGCCGTGAAAGACTTGAGTAAACTGAAGCTG 1127
Query 1178 GTCGAACTTAGAGGCATAGCAAAGTCACGGGGACTAAAAGGGTTGTCAAAGATGAAGAAA 1237
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1128 ATGGAACTTAGAGGCATAGCAAAGTCACGGGGACTAAAAGGGTTTTCAAAGATGAAGAAA 1187
Query 1238 GCCGAATTAGTGGAGTTGCTTGGTAGTGATTCCAGCT 1274
|||||| |||||||||||||||||||| |||| ||||
Sbjct 1188 GCCGAACTAGTGGAGTTGCTTGGTAGTAATTCTAGCT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5