BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06200.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919333 jgi|Araly1|919333|scaffold_100614.1 1027 0.0
Ahg482042 jgi|Araly1|482042|fgenesh2_kg.4__1102__AT2G31140.1 470 1e-131
> Ahg919333 jgi|Araly1|919333|scaffold_100614.1
Length=659
Score = 1027 bits (556), Expect = 0.0
Identities = 626/660 (95%), Gaps = 4/660 (1%)
Strand=Plus/Plus
Query 63 AAAAGTCGCA-AGCATTCAACGATGGCTTCCATCACGAATTATGTCCGATACATGGCTCA 121
|||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAAAGTCG-ATAGCACTCAACGATGGCATCCATCACGAATTATGTCCGATACATGGCTCA 59
Query 122 CAAGCTCGAGTACTCTCTCACTCTCAGCCTTAAGAAACATACTAGAGAGAAGCTCAGTGA 181
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 CAAGCTCGAGTACTCTCTCACTCTCAGCCTCAAGAAACATACTAGAGAGAAGCTCAGTGA 119
Query 182 CCGGGAACTCTTTGGTG-TAGTCATGAAGAATCTATTCTATGGAAGAATAAGCTACTTAC 240
|||||||||| |||| | |||||||||||||||||||||||||||| |||| ||||||||
Sbjct 120 CCGGGAACTCCTTGG-GATAGTCATGAAGAATCTATTCTATGGAAGGATAACCTACTTAC 178
Query 241 ACTCGGACAAAGGAAAAGAGATGGCCCCAACCATGGGAACAAATGAAAGCACGCTACTTG 300
||||||| |||||| |||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 179 ACTCGGATAAAGGACAAGAGATGGCCCCAACTATGGGAACAAATGAAAACACGCTACTTG 238
Query 301 TCCGTAAGCTACCAGTTGTTGATACAAGGTACATTTTCGTAGGGGATGCTGTTGTCTTGA 360
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 239 TCCGTAAGCTGCCAGTTGTTGACACAAGGTACATTTTCGTTGGGGATGCTGTTGTCTTCA 298
Query 361 AGGACCCGAATGAAACAAATAAGTATATAGTCAGAAGACTAGCAGCTTTAGAGGGATCTG 420
||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 299 AGGACCCGAATGAAAAAAAGAAGTATATAGTCAGAAGATTAGCAGCTTTAGAGGGATCTG 358
Query 421 AAATGGTATCAAGTGATGAGAAAGATGAGCCTTTTGTTCTCGAAAAGGATCAGTGCTGGG 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAATGGTATCAAGTGATGGGAAAGATGAGCCTTTTGTTCTCGAAAAGGATCAGTGCTGGG 418
Query 481 TCGTTGCTGAGAATCAAGAGATGAAATCTAAAGAAGCATATGATAGTCGAACATTTGGTC 540
|||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 TCGTAGCTGAGAACCAAGAGATGAAATCTAAGGAAGCATATGATAGTCGAACATTTGGTC 478
Query 541 CAATTTCAATGGCGGACATAGTGGGAAGAGCTATATATTGTCTGAGGACAGCAGTGGATC 600
| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 479 CGATTTCCATGGCGGACATAGTAGGAAGAGCTATATATTGTCTGAGGACAGCGGTGGATC 538
Query 601 ATGGTCCAGTAAGCAACAGTGAATTTGCCATGGACGAGGATTCCCCAATCCTGGCGGTAG 660
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 539 ATGGTCCAGTAAGCAACAGTGAATTTGCCATGGAAGAGGATTCTCCAATCCTGGCGGTAG 598
Query 661 AACTTGACGTGGATGAATTGGCTAAAGGCCACAAGGCGTCATAATGAAGAACCTTTCTTG 720
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 599 AACTTGACGTGGATGAATTGGCTAAAGACCACAAGGCGTAATAACGAAGAACCTTTCTTG 658
> Ahg482042 jgi|Araly1|482042|fgenesh2_kg.4__1102__AT2G31140.1
Length=857
Score = 470 bits (254), Expect = 1e-131
Identities = 503/623 (81%), Gaps = 18/623 (3%)
Strand=Plus/Plus
Query 84 ATGGCTTCCATCACGAATTATG-TCCGATACATGGCTCACAAGCTCGAGTACTCTCTCAC 142
|||||||| ||| ||| || | |||||||||||||||||||||||||||| || |||||
Sbjct 116 ATGGCTTCAATCTCGACTT-GGTTCCGATACATGGCTCACAAGCTCGAGTATTCCCTCAC 174
Query 143 TCTCAGCCTTAAGAAACATACTAG-AGAGAAGCTCAGTGACCGGGAACTCT-TTGGTGTA 200
|||||| || |||| |||| || | |||| || |||||||||||||| | || ||
Sbjct 175 TCTCAGTCTCAAGAGTCATAGGAGTA-AGAAACTGAGTGACCGGGAACT-TATTCAAATA 232
Query 201 GTCATG-AAGAATCTATTCTAT-GGAAGAATAAGCTACTTACACTCGGACAAAGGAAAAG 258
| || ||||||||||||||| |||| ||||| |||||||||||| || |||||| ||
Sbjct 233 AT-TTGCAAGAATCTATTCTATGGGAA-AATAACCTACTTACACTCAGATAAAGGACCAG 290
Query 259 AGATGGCCCCAACCATGGGAACAAATGAAAGCACGCTACTTGTCCGTAAGCTACCAGTTG 318
| ||| | ||||||||| | ||||||||| ||| || ||| |||||||| ||||| |||
Sbjct 291 AAATGTCACCAACCATGACAGCAAATGAAAACACACTTCTTATCCGTAAGATACCAATTG 350
Query 319 TTGATACAAGGTACATTTTCGTAGGGGATGCTGTTGTCTTGAAGGACCCGAATGAAACAA 378
| |||| |||| | ||| | || ||||| || ||||| |||||||| ||||| ||
Sbjct 351 CTAATACCAGGTTTGTATTCATTGGAGATGCCGTCGTCTTAAAGGACCCAAATGATTCAG 410
Query 379 ATAAGTATATAGTCAGAAGACTAGCAGCTTTAGAGGGATCTGAAATGGTATCAAGTGATG 438
|||||||| | || |||||| |||||||| |||| |||| |||||||||||| ||||||
Sbjct 411 ATAAGTATCTGGTAAGAAGATTAGCAGCTGTAGAAGGATTTGAAATGGTATCGGGTGATG 470
Query 439 AGAAAGATGAGCCTTTTGTTCTCGAAAAGGATCAGTGCTGGGTCGTTGCTGAGAATCAAG 498
| ||||| ||||||||||||||||||||||||||||| ||||| ||||| || || |
Sbjct 471 AAAAAGAGGAGCCTTTTGTTCTCGAAAAGGATCAGTGTTGGGTAACAGCTGAAAACCAGG 530
Query 499 AGATGAAATCTAAAGAAGCATATGATAGTCGAACATTTGGTCCAATTTCAATGGCGGACA 558
|| | ||| |||| ||||||||||||||| |||||||||||||| |||||| || || |
Sbjct 531 AGCTCAAAGCTAAGGAAGCATATGATAGTAGAACATTTGGTCCAGTTTCAACAGCAGATA 590
Query 559 TAGTGGGAAGAGCTATATATTGTCTGAGGACAGCAGTGGATCATGGTCCAGTAAGCAACA 618
| || ||||||||||||||||||||||| ||||| || ||||| ||||| || | ||||
Sbjct 591 TTGTTGGAAGAGCTATATATTGTCTGAGAACAGCCGTCGATCACGGTCCTGTTCGAAACA 650
Query 619 GTGA-ATTTGCCATGG-ACGAGGATTCCCCAATCCTGGCGGTAGAACTTG-ACGTGGATG 675
|| | | | || |||| || || |||| ||||||||||| |||||| ||| ||||||| |
Sbjct 651 GTCACACT-GCAATGGGACAAG-ATTCTCCAATCCTGGCCGTAGAA-TTGGACGTGGACG 707
Query 676 A-ATTGGCTAAAGGCCACAAGGC 697
| || ||||||| |||||||||
Sbjct 708 AGAT-GGCTAAAAACCACAAGGC 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5