BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06225.1
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919336 jgi|Araly1|919336|scaffold_100617.1 366 3e-101
> Ahg919336 jgi|Araly1|919336|scaffold_100617.1
Length=292
Score = 366 bits (198), Expect = 3e-101
Identities = 235/253 (93%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAGTCTCAAGTTATGGGTTTGTTTGGTCCTGCTTCTAGTACTCGAATTGACATCG 60
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||
Sbjct 21 ATGGCAAGTCTCAAGTTATGGGTTTGTTTGGTCTTGCTTCTAGTACTCAAATTGACCTCG 80
Query 61 GTGCACGAATGTCGACCATTGGTTGCCGAAGAGAGATTTTCTGGTTCAAGTCGTTTGAAA 120
||| |||||||| |||| |||||||| |||||||| |||||||||||||| |||||||||
Sbjct 81 GTGAACGAATGTAGACCTTTGGTTGCGGAAGAGAGCTTTTCTGGTTCAAGCCGTTTGAAA 140
Query 121 AAGATAAGACGTGAACTTTTTGAGAGGTTAAAAGAGATGAAGGGGAGATCAGAAGGCGAA 180
||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 141 AAGATTAGACGTGAACTTTTTGAGAGGTTAAAAGAGCTTAAGGTGAGATCAGAAGGCGAA 200
Query 181 GA-GACGATCCTTGGAAATACTCTTGACTCAAAGCGGCTTAGTCCCGGTGGTCCTGACCC 239
| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 201 -ATGACGATCCTTGGAGATACTCTTGACTCTAAGCGGCTTAGTCCCGGTGGTCCTGACCC 259
Query 240 GAGGCATCACTGA 252
||||||||||||
Sbjct 260 AAGGCATCACTGA 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8745111769
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5