BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06240.1
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470644 jgi|Araly1|470644|fgenesh2_kg.1__598__AT1G06240.1 1611 0.0
> Ahg470644 jgi|Araly1|470644|fgenesh2_kg.1__598__AT1G06240.1
Length=1183
Score = 1611 bits (872), Expect = 0.0
Identities = 1078/1168 (92%), Gaps = 52/1168 (4%)
Strand=Plus/Plus
Query 125 TTCTTCGACGAAGCAACAACACAAGCTTTGGTCTGGTCTCGAAAACTGGAGAAAGAGTCC 184
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 66 TTCCTCGACGAAGCAACAACACAAGCTTTGGTCTGGTCTCGACAACTGGAGAAAGAGTCC 125
Query 185 TGTCAACGACCTCCGTCTCTGGGGTCCTACTGGTCCTCTCCTTCCTTCTTCTTCTGACTC 244
|||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 126 TGTCAATGACCTCCGTCTCTGGGGTCCTACTGGTCCTCTCCTT-C--CTTCTTCTGACTC 182
Query 245 CATCTCCGCC-GACTTCTACGGTCTCGTCTCAGCTGCATCTTCTCTCGCTGATCTCGGAG 303
||||||| || | |||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 183 CATCTCC-CCAGGCTTCTACGGTCTCGTCTCGGCGGCGTCTTCTCTCGCTGATCTCGGAG 241
Query 304 CACTCGTTCTCTCAACCTCCGATCCTCTCTCCAAATCTCATATCTCCCATTTAGCTTTCT 363
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 242 CTCTCGTGCTCTCAACCTCCGATCCTCTCTCCAAATCTCATATCTCCCATTTGGCTTTCT 301
Query 364 CTCGTTGGCGCCGTGAGAATCTCCCTGTTGGCTCAATCTCTCATCTTCCTTCTTCTCCAG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CTCGTTGGCGCCGTGAGAATCTCCCTGTTGGCTCAATCTCTCATCTTCCTTCTTCTCCAG 361
Query 424 CTCGTCCTCCCAAACCTCTCCTCGTTGCGACCAACCAAGTCCCAAATCCGAAAGACTCAA 483
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 362 CTCGTCCTCCCAAACCTCTCCTCGTTGCGACCAACGAAGTTCCAAATCCGAAAGACTCAA 421
Query 484 ACCTTCCTCTCAATGCTCATATGCTTCATAATCTAGCTCATGTTGAGCTTAATGCTATTG 543
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 422 ACCTTCCTCTCAATGCTCATATGCTTCATAATCTAGCTCATGTCGAGCTCAATGCTATTG 481
Query 544 ATTTGGCTTGGGATACTGTTGCTCGTTTCTCTCCTTTCTTCGACCTTTTGGGTCACAACT 603
||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 482 ATTTGGCTTGGGACACTGTTGCTCGTTTCTCTCCCTTCTTCGACGTTTTGGGTCGCAACT 541
Query 604 TCTTTGATGACTTTGCTCATGTTGCTGATGATGAGAGTCGCCATTTCTTGTGGTGTTCCC 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TCTTTGATGACTTTGCTCATGTTGCTGATGATGAGAGTCGCCATTTCTTGTGGTGTTCCC 601
Query 664 AGAGACTCGCTGAGCTTGGTTTCAAGTATGGAGATATACCGGCTAATAATTTGCTCATGA 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AGAGACTCGCTGAGCTTGGTTTCAAGTATGGAGATATACCGGCTAATAATTTGCTCATGA 661
Query 724 GGGAATGCGAGAAAACTTCCAACAATGTCGCTGCTCGCTTGGCTTGT-ATCCCTCTTGTT 782
||||||||||||| || ||||||||||||||||||||||||||| || ||||||||||||
Sbjct 662 GGGAATGCGAGAAGACATCCAACAATGTCGCTGCTCGCTTGGCT-GTTATCCCTCTTGTT 720
Query 783 CAGGAGGCTAGAGGACTTGATGCTGGACCTAGGTTGGTCAAACGGCTGACAGGATTTGGA 842
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 721 CAGGAGGCTAGAGGACTTGATGCTGGACCTAGGTTGGTCAAACGGCTGACGGGATTCGGA 780
Query 843 GATAACAGGACTTCGAAAATCGTGGCGAAGATCGCTGAGGAGGAAGTTGCACATGTAGCT 902
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 GATAATAGGACTTCTAAAATCGTGGCTAAGATCGCTGAGGAGGAAGTTGCACATGTAGCT 840
Query 903 GTTGGTGTAGACTGGTTTCTCTCTGTGTGTCAAAAGATGAACCGTGCTCCTTCCCCTACA 962
||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 GTTGGTGTAGACTGGTTTCTCTCTGTGTGTCAAAAGATGAACC--------------A-- 884
Query 963 TTTAAAGATCTGATCAAAGAGTATGGTGTCGAGTTAAGGGGCCCTTTCAACCACTCAGCT 1022
||| |||| | || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 885 TTT---GATC--A--AA-GAGTATGGTGTCGAGTTAAGGGGCCCTTTTAACCACTCAGCT 936
Query 1023 CGGGAGGTAGCTGGCATTCCGCGAGATTGGTATGATCCATCATGTGGCACGGAAGTGGAT 1082
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 937 CGGGAGGTAGCTGGCATTCCACGAGATTGGTATGATCCATCATGTGGCACAGAAGTAGAT 996
Query 1083 AAAGGCGATAACGAACAGGGTGACAAGGAGCAACTCTCTGCAGTTTACGATAGGCTCACT 1142
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 997 AAAGGCGATAACAAACAGGGTGACAAGGAGCAACTTTCTGCAGTTTATGATAGGCTCACT 1056
Query 1143 CACATTATCTCAATGGAGAGTGAGAATTCAAGTCTTGAAAAGCCTGCCAAATGAAATGAT 1202
|||||||| || ||||||||||||||||||||||| | || ||| |||||||||||||||
Sbjct 1057 CACATTATTTCGATGGAGAGTGAGAATTCAAGTCTCGGAAGGCCAGCCAAATGAAATGAT 1116
Query 1203 GCAGTCAGAGTCTTGATTTGATGGCGTTATAACTGATGAATGAGTGTCAGGCGTAATTTC 1262
| | | | | || || | | ||||||||||||||||||||||||||||
Sbjct 1117 ----T--G-G-C--G-TT--AT------A-A-CTGATGAATGAGTGTCAGGCGTAATTTC 1155
Query 1263 TTGGGCTCTGGAAGTACAAATTAATGTT 1290
||||||||||||||||||||||||||||
Sbjct 1156 TTGGGCTCTGGAAGTACAAATTAATGTT 1183
Score = 82.4 bits (44), Expect = 9e-15
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 46 TGTTGATTCATCATCTTCGTCCTTTTTCAACTG-CTTCTCTGTCTCCTCGTTCTCTCACC 104
|||||||||||||||| ||| | ||| |||| | ||| ||||||||||||||||||||||
Sbjct 5 TGTTGATTCATCATCTGCGTGCGTTTCCAAC-GACTTGTCTGTCTCCTCGTTCTCTCACC 63
Query 105 ATTTCC 110
||||||
Sbjct 64 ATTTCC 69
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57135367500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5