BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06250.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910311 jgi|Araly1|910311|Al_scaffold_0001_565 1718 0.0
Ahg320861 jgi|Araly1|320861|fgenesh1_pm.C_scaffold_4000918 296 3e-79
> Ahg910311 jgi|Araly1|910311|Al_scaffold_0001_565
Length=1053
Score = 1718 bits (930), Expect = 0.0
Identities = 999/1033 (97%), Gaps = 2/1033 (0%)
Strand=Plus/Plus
Query 46 ATGGTGGAGGGCATACCAAAGAGATGGAAGGTGCTAAGTGGCCAAAACAAATGGAAAGGC 105
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGTGGAGGGCATACCAAAGAGATGGAAGGTGCTAAGTGGCCAAAACAAATGGCAAGGC 60
Query 106 CTGCTTGATCCACTTGACCCGGATCTTCGCCGCTACATCATTCACTACGGCGAGATGTCT 165
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 CTGCTTGATCCACTTGACCCGGATCTTCGCCGCTACATCATTCACTATGGTGAGATGTCT 120
Query 166 CAGGTTGGTTACGATGCCTTTAACTGGGACCGTAAGTCCAGATACGCCGGTGATTGTTAT 225
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CAGGTTGGTTATGATGCCTTTAACTGGGACCGTAAGTCCAAATACGCCGGTGATTGTTAT 180
Query 226 TACTCCAAGAACCGACTGTTAGCTCGAACCGGCTTCCTTAAAGCCAACCCTTTCAGGTAC 285
||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TACTCAAAGAACCAACTGTTTGCTCGAACCGGCTTCCTTAAAGCCAACCCTTTCAGGTAC 240
Query 286 AAAGTGACTAAGTACATCTACGCAACAGCTTCCATAAAGTTACCAATCTCTTTCATCGTA 345
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AATGTGACTAAGTACATCTACGCAACAGCTTCCATAAAGTTACCAATCTGTTTCATCGTC 300
Query 346 AAGTCTTTGTCAAAGGATGCATCTCGCGTGCAGACTAACTGGATGGGTTACATTGCGGTT 405
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 AAGTCTTTGTCAAAGGATGCATCTCGCGTGCAGACTAACTGGATGGGTTACATTGCAGTT 360
Query 406 GCTACAGACCAGGGAAAAGCGATGTTAGGGAGGAGAGACATTGTTGTTGCATGGAGAGGA 465
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GCTACAGACCAGGGTAAAGCGATGTTAGGAAGGAGAGACATTGTTGTTGCATGGAGAGGA 420
Query 466 ACTCTACAGCCATATGAATGGGCTAATGATTTCGATTTTCCGCTTGAGCCAGCTATCTCG 525
|| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 421 ACACTTCAGCCATATGAATGGGCTAATGATTTTGATTTTCCGCTTGAGTCAGCTATCTCG 480
Query 526 GTTTTCCCAGTAACTGACCCCAAAGATAACCCTCGTATTGGAAGTGGCTGGCTCGACATC 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTTTCCCAGTAACTGACCCCAAAGATAACCCTCGTATTGGAAGTGGCTGGCTCGACATC 540
Query 586 TATACCGCTTCTGATTCTCGCTCACCTTATGACACGACTAGTGCACAAGAACAGGTACAA 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TATACCGCTTCTGATTCTCGCTCACCTTATGACACGACTAGTGCACAAGAACAGGTACAA 600
Query 646 GGAGAGCTCAAGAGGTTGCTAGAACTTTACAAGGATGAAGAAATAAGCATCACCTTCACA 705
|| ||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 601 GGTGAGCTGAAGAGGTTGCTAGAACTTTACAAGAATGAGGAAATAAGCATCACTTTCACA 660
Query 706 GGCCATAGCTTGGGCGCAGTTATGTCAGTTCTATCAGCTGCAGATCTTGTCTATGGCAAA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGCCATAGCTTGGGCGCAGTTATGTCAGTTCTATCAGCTGCAGATCTTGTCTATGGCAAA 720
Query 766 AAGAATAATATCAATATAAATCTTCaaaaaaaGCAAGTTCCTATCACAGTTTTTGCTTTC 825
||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGAACAAGGTCAATATAAGTCTTCAAAAAAAGCAAGTTCCTATCACAGTTTTTGCTTTC 780
Query 826 GGGAGTCCTCGGATTGGAGACCATAACTTCAAAAACGTAGTCGACTCACTCCAACCACTA 885
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 781 GGGAGTCCTCGGATTGGAGACCATAACTTCAAAAACATCGTCGACTCACTCCAACCACTA 840
Query 886 AACATTCTAAGAATAGTAAATGTTCCAGATGTCGCACCACATTATCCACTCTTACTGTAC 945
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AACATCCTAAGAATAGTAAATGTTCCAGATGTCGCACCACATTATCCACTCTTACTGTA- 899
Query 946 T-CAGAAATTGGCGAGGTGTTAGAGATCAATACTTTGAACTCAACATACCTGAAACGGTC 1004
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGCAGAAATTGGCGAGGTGTTAGAGATCAATACTTTGAACTCAACATACCTGAAACGGTC 959
Query 1005 TCTGAACTTCAGGAACTACCATAACCTGGAGATATACCTGCACGGCATGGCAGGGATGCA 1064
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 960 TCTGAACTTCAGGAACTACCATAACCTGGAGATATACCTGCACGGCATAGCAGGGATGCA 1019
Query 1065 AGATACAGACGGG 1077
|||||||| ||||
Sbjct 1020 AGATACAGCCGGG 1032
> Ahg320861 jgi|Araly1|320861|fgenesh1_pm.C_scaffold_4000918
Length=1065
Score = 296 bits (160), Expect = 3e-79
Identities = 609/819 (74%), Gaps = 58/819 (7%)
Strand=Plus/Plus
Query 428 TGTTAGGGAGGAGAGACATTGTTGTTGCATGGAGAGGAACTC-TACAGCCATATGAATGG 486
||||||||||||| |||||||||||||||||| ||||||| | | |||| || || |||
Sbjct 206 TGTTAGGGAGGAGGGACATTGTTGTTGCATGGCGAGGAAC-CATTCAGCTGTACGAGTGG 264
Query 487 GCTAATGATTTCGATTTTCCGCTTGAGCCAGCTATCT-CGGTTTTCCC-AGTAACTGACC 544
||||| || |||||||| || ||||| ||||| | | | |||||||| | | || |||
Sbjct 265 GCTAACGACTTCGATTTCCCACTTGAATCAGCTGT-TACTGTTTTCCCTCG-AGCTAACC 322
Query 545 CCAAAGATAACCCTCGTATTG-GAAGTGGCTGGCTCGACATC--TATACCGCTTCTGATT 601
| || || | ||||| || | || ||| ||||| | | || ||||| | |||||
Sbjct 323 CGAATGACGAGCCTCGCATAGCCAA-TGGTTGGCT-GTC-TCTTTATACATCCACTGATC 379
Query 602 CTCGCTCACCTTATGACACGACTAGTGCACAAGAACAGGTACAAGGAGAGCTCAAGAGGT 661
| || || | || ||||| ||| ||||||||||| ||||| ||||||||||| || ||||
Sbjct 380 CGCGATCGCGTTTTGACAAGACCAGTGCACAAGAGCAGGTTCAAGGAGAGCTTAAAAGGT 439
Query 662 TGCTAGAACTT-TACAAGGATGAAGAAATAAGCATCACCTTCACAGGCCATAGCTTGGGC 720
| |||||| || ||||| | ||||| || | ||||||||| ||||||||||||||||||
Sbjct 440 TACTAGAA-TTGTACAAAAACGAAGACATTACCATCACCTTAACAGGCCATAGCTTGGGC 498
Query 721 GCAGTTATGTC-AGTTCTATCAGCTGCAGATCTTGTCT--ATGGCAAAAAGAATAATATC 777
||||||||||| | ||||||| || ||||| ||| ||| || | || | ||| |||
Sbjct 499 GCAGTTATGTCGA-TTCTATCCGCCGCAGA-CTT-TCTCCATAACGAATGGCCTAAGATC 555
Query 778 AATATAAA-TCTTCaaaaaaaGCAAGTTCCTAT--CACAGTTTTTGCTTTCGGGAGTCCT 834
| | || ||| ||| | | || | | ||| | ||||||||| ||||| || |||||
Sbjct 556 AC-ACCAAGTCTACAACACAGGCTA-T-CCTGTGTCACAGTTTTCGCTTTTGGTAGTCCC 612
Query 835 CGGATTGGAGACCATAACTTCAAAA-ACGTAGTCGACTCACTCCAACCAC-TAAACATTC 892
|| || || |||| | |||||||| || | || || || ||| ||| || | |||| |
Sbjct 613 CGCATCGGTGACCGCAGCTTCAAAAGAC-TCGTAGAGTCTCTCGAAC-ACCTCCACAT-C 669
Query 893 T-AAGAATAGTAAATGTTCCAGATGTCGCACCACATTATCCACTCTTACTG-TACTCAGA 950
| |||| || |||||| |||||| || || | ||| || | || | | | | ||||
Sbjct 670 TTAAGAGTAACAAATGTCCCAGATCTCATTCCGCGTTACCCGGTATT-CAGGTTCACAGA 728
Query 951 AATTGGCGAGGTG-TT-AGAGATCAATACTTTGAACTCA-ACATACCTGAAACGGTCTCT 1007
| ||||||| | || | | ||||| || |||| ||| | ||||||||||| |||||
Sbjct 729 TGTAGGCGAGGAGCTTCA-A-ATCAACACACTGAAATCAGAG-TACCTGAAACGATCTCT 785
Query 1008 GAACTTCAGGA-ACTACCATAACCTGGAGA-TATACCTGCACGGCATGGCAGGGATGCAA 1065
||| | ||| | | ||||||||||||| | ||| | |||||| ||||||||| |||
Sbjct 786 AAACCTG-GGACATTTCCATAACCTGGAGGCT-TACTTACACGGCGTGGCAGGGACACAA 843
Query 1066 GATA--CAGACGGGGTATTCAAGCTGGAGATTGGCCGGGATATTTCGTTGGTCAATAAAG 1123
| | || | || | |||||| || ||||| ||| |||||| || |||| || ||||
Sbjct 844 CACAATCA-A-GGAGAATTCAAACTAGAGATAAACCGCGATATTGCGCTGGTGAACAAAG 901
Query 1124 GATTGGATGCTCTA-AAGGACGAGTACTTAGTGCCAAGTACCT-GGAGGTGT-CTGGCA- 1179
| || |||||||| ||| | |||||||||| ||| | || | || || || || | |
Sbjct 902 GTTTAGATGCTCTTGAAG-ATAAGTACTTAGTACCAGG-ACATTGGTGG-GTTCTTG-AG 957
Query 1180 AACAAAGGGATGCTTCAAA-TGGATGATGGGACATGGAA 1217
|||||||| ||| |||||| || ||||||||||||||||
Sbjct 958 AACAAAGGAATGGTTCAAAGTG-ATGATGGGACATGGAA 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5