BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06265.1
Length=2210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919340 jgi|Araly1|919340|scaffold_100621.1 736 0.0
Ahg470646 jgi|Araly1|470646|fgenesh2_kg.1__600__AT1G06265.2 560 1e-158
> Ahg919340 jgi|Araly1|919340|scaffold_100621.1
Length=1073
Score = 736 bits (398), Expect = 0.0
Identities = 414/422 (98%), Gaps = 0/422 (0%)
Strand=Plus/Minus
Query 602 CCGCATTTTCCTTGATTTCTGATAGGAGTCACAGCACCTTGAGTCCTCCAGTCCACAGCG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CCGCATTTTCCTTGATTTCTGATAGGAGTCACAGCACCTTGAGTCCTCCAGTCCACAGCG 407
Query 662 TCCGGGACATTGCCTGCTGGGTCACAAACTGGTCTCTGCTTCTTGTGTAACCTCAAGGAA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TCCGGGACATTGCCTGCTGGGTCACAAACTGGTCTCTGCTTCTTGTGTAACCTCAAGGAA 347
Query 722 GACGTGTTCAACCCGAGAAAATGGGCCTTAAACTCAGAATTGGTCATATCTGCAAATCTA 781
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 346 GACGTGTTCAACCCGAGAAAATGGGCCTTAAACTCAGAATTGGTCATGTCTGCAAATCTG 287
Query 782 TTATCCGTTAGCTTAAAGGGCAAGTGGAGGGAGTTGATGTAGTCAATCAACTGGACGTTA 841
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 286 TTATCCGTTAGCTTAAAGGGCAAGTGGAGGGAGTTGATGTAGTCAATCAATTGGACGTTA 227
Query 842 GACTGATATATCCCAAACCGTAGCATCCACTCATCCCTTCCTCCATATAATTTGCTGTGG 901
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 226 GACTGGTATATCCCAAACCGTAGCATCCACTCATCCCTTCCTCCATATAGTTTGCTGTGG 167
Query 902 GTTTTAAGCCACTTCTCGAACCGCTGCTTCAGGGTTTTGTGTGGGTCATACACAGAGGAA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 GTTTTAAGCCACTTCTCGAACCGCTGCTTCAGGGTTTTGTGTGGGTCATACACAGAGGAA 107
Query 962 TCGACGGAACATAGCTTTGAAGCTATCAAGACAAAGCAAATCAAAACGGCAAGGGTCAGG 1021
| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 106 TTGACGGAACATAGCTTTGAAGCTATCAAGACAAAGCATATCAAAACGACAAGGGTCAGG 47
Query 1022 TT 1023
||
Sbjct 46 TT 45
Score = 529 bits (286), Expect = 4e-149
Identities = 300/307 (98%), Gaps = 0/307 (0%)
Strand=Plus/Minus
Query 57 GCTTATGGAGATTCATGGACTCACTGCAAGGGATAGCTTGCCATCATAGCAATACCACAT 116
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1072 GCTTGTGGAGATTCATGGACTCACTGCAAGGGATAGCTTGCCAGCATAGCAATACCACAT 1013
Query 117 TTACCCGTGTCTTCACTTACACCACGCTCCATCCGTATGTAGCCTTCTTCACCCCAGCCA 176
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TTACCCGTGTCTTCGCTTATACCACGCTCCATCCGTATGTAGCCTTCTTCACCCCAGCCA 953
Query 177 GTTCCCCATGAATTCTTTACGATCCAGTACTTTTGATCGCCTTCTACTCCATATCCAACA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GTTCCCCATGAATTCTTTACGATCCAGTACTTTTGATCGCCTTCTACTCCATATCCAACA 893
Query 237 ACAGTCACTCCATGGTTGAGATTTGTTCCACAGTAATTTGTGAAAACACCGGAGGAGTAG 296
|||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 892 ACAGTCACTCCATGGTTGAGATTTGTTCCACAGTAACTTGTGAAAACACCAGAAGAGTAG 833
Query 297 AGCTGAAAGATAAACCCACCAGCATCGATTCCAACTGATACTGGCTGTTGAGCTGCAGCG 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGCTGAAAGATAAACCCACCAGCATCGATTCCAACTGATACTGGCTGTTGAGCTGCAGCG 773
Query 357 ATTTGTA 363
|||||||
Sbjct 772 ATTTGTA 766
Score = 176 bits (95), Expect = 6e-43
Identities = 103/107 (96%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 361 GTACCCTCTATGCCTGTGTATGGGTAGTCGGTCTCCGTGGCGAGTCCACCATTGGTTTTG 420
||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||
Sbjct 688 GTACCCTCTATGCCTGTGTATGGGTAGTCGGTCTCGGTGGTGAGTCCACCATTGCTTTTG 629
Query 421 ATGAATTCAAATGCTGTTTCCATTAATCCGCCACTACAGCCTTTGTT 467
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 628 ATGAATTCAAAGGCTGTTTCCATTAATCCGCCACTACAGCCTTTGTT 582
Score = 58.4 bits (31), Expect = 2e-07
Identities = 34/35 (97%), Gaps = 1/35 (3%)
Strand=Plus/Minus
Query 468 CTGCTACTGCAGAGAATGCCCAGCAACCTCCTGCA 502
||||||||||||||||||||||||||||||| |||
Sbjct 495 CTGCTACTGCAGAGAATGCCCAGCAACCTCC-GCA 462
> Ahg470646 jgi|Araly1|470646|fgenesh2_kg.1__600__AT1G06265.2
Length=1019
Score = 560 bits (303), Expect = 1e-158
Identities = 413/462 (89%), Gaps = 23/462 (5%)
Strand=Plus/Plus
Query 1645 TCAGATGATTCTGAAGCAGTGCCAGAAAGGTTTATCTACAGAGAGGAATGTCGGAAAATG 1704
|||||||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 580 TCAGATGATTCTTAAGCAGCACCAGACAGGTTCATCTACAGAGAGGAATGTCGGAAAATG 639
Query 1705 AAGACAATGGTCATAAGGGGTGGCTGATTCTGTTTGCAGGAAAGATCCAGATATTAGACA 1764
||||||||||||||||||||||| |||||||||||| |||||||||| || |||||| ||
Sbjct 640 AAGACAATGGTCATAAGGGGTGGTTGATTCTGTTTGAAGGAAAGATCTAGGTATTAGGCA 699
Query 1765 ACATGCTCTGGCGA-GCGAACCAGTCTTACTTGATGGTGACAACTCTTTTTGAGAAATTT 1823
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 700 ACATGCTCTGG-GAAGCGAACCAGTCTTACTTGATGGTGACAACTCTTTTTGAAAAATTT 758
Query 1824 AGTTTCAGGTTCCAAACCATTGATGAAAGATAATGGAATCTTCAAGAATGAGGCAGAGCA 1883
|||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 759 AGTTTCAGGTTCCAAACCATTGGTGGGAGATAGTGGAATCTTCAAGAATGAGGCAGAGCA 818
Query 1884 GAGAACATGAATACATTGAAACTCACCGGTCAAGTACTCAATTGCACCTTAACAACGCTG 1943
||||||||||||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 819 GAGAACATGAATACAATGAAACTCACCGGTCAAGT--------GCACCTGAACAACGCTG 870
Query 1944 GTCGCTAAGTATAAGCCCCTGCTTCGGTTCTGGATAGATGTTTCCGGTTTGGTTTAGCCG 2003
|||||| |||| || |||||||||||||||| |||||||||||||||||||| ||| |||
Sbjct 871 GTCGCTGAGTACAATCCCCTGCTTCGGTTCTAGATAGATGTTTCCGGTTTGGCTTAACCG 930
Query 2004 AATAAAATTAGACAGGCTATAGAGGAAATAGTCTTTAATTAATTTAATTTCGATGTAACT 2063
|| ||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 931 AA----------CAGGCTATAGAGGAAATGGTCTTTAATGAATTTAATTTCGATGTAACT 980
Query 2064 AACAATAGTACATGTTTTAAGCGTTGATTAACCGTTaaaaaa 2105
||||||| |||||||||||||||||||||||||| |||||
Sbjct 981 AACAATA---CATGTTTTAAGCGTTGATTAACCGTTCAAAAA 1019
Score = 462 bits (250), Expect = 4e-129
Identities = 377/432 (87%), Gaps = 34/432 (8%)
Strand=Plus/Plus
Query 1087 AAACGTAAAGGTACTCGTTGTAAAACTGGTGCTGATTGGCTTTCTCTGAAGATTGTTGAT 1146
|||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 89 AAAC-TAAACGTACTCGTTGTAAAACTGGTGCTGATTGGGTTTCTCTGAAGATTGTTGAT 147
Query 1147 CCTTCCATTGTAAACTTTGGTGTTGACAATTCTTGAGTCCTTCTTTCTTTGTCA-TT-TC 1204
|||||| | | || || || ||||||||||||||||||||||| || ||
Sbjct 148 CCTTCC-------A---T--TG-TG--AA--CTTGAGTCCTTCTTTCTTTGTCATTTCTC 190
Query 1205 TAAATAAA-TACAAATTTTTGACCCAAGAAGATTCAGTTTCTTGAGCTATGGAAAAACAT 1263
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 191 TAAATAAAGTACAATTTTTTGACCCAAGAAGATTCAGTTTCTTGAGCTATGAAAAAACAT 250
Query 1264 GTG-CTGGAGAAATTTGAGGCTTCCAGG-A-TCAAGTTCATTACAGTCAGAAACCCTGTT 1320
||| | | |||||||||||||||||||| | | || ||| ||| |||||| || ||||
Sbjct 251 GTGAC-GCAGAAATTTGAGGCTTCCAGGTACTTAA-TTC-TTATT-TCAGAA-CC-TGTT 304
Query 1321 GAGAAACTTTGTTCAGATGTGGTTCAAGACTTGCTTGCTGAAGCCTCTTTCGTTTATGGA 1380
||||||||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 305 GAGAAACTTTGCTCAGATGCGGTTCAAGACTTGCTTGCTAAAGCCTCTTTCGGTTATGGA 364
Query 1381 AAACCATTGCCTCCCCTTCTAATTATTACATGAATATGCTTTGAA---AAGAAATCATGA 1437
|||||| |||||||||||| ||| ||||||||||||||||||| |||||||| |||
Sbjct 365 AAACCAGTGCCTCCCCTTCAAATG-TTACATGAATATGCTTTGATTTGAAGAAATCTTGA 423
Query 1438 ATATGGAAAGAAGCCATGGGTATTGTTCAGCTAGAAAACTGAACCAAGGATGATGCTTGC 1497
||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||||
Sbjct 424 ATATGGAAAGAAGCCATAGATATTGTTCAGCAAGAAAAGTGAACCAAGGATGATGCTTGC 483
Query 1498 TTTGTCATGCGG 1509
||||||||||||
Sbjct 484 TTTGTCATGCGG 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83189095080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5