BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06265.1 Length=2210 Score E Sequences producing significant alignments: (Bits) Value Ahg919340 jgi|Araly1|919340|scaffold_100621.1 736 0.0 Ahg470646 jgi|Araly1|470646|fgenesh2_kg.1__600__AT1G06265.2 560 1e-158 > Ahg919340 jgi|Araly1|919340|scaffold_100621.1 Length=1073 Score = 736 bits (398), Expect = 0.0 Identities = 414/422 (98%), Gaps = 0/422 (0%) Strand=Plus/Minus Query 602 CCGCATTTTCCTTGATTTCTGATAGGAGTCACAGCACCTTGAGTCCTCCAGTCCACAGCG 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 CCGCATTTTCCTTGATTTCTGATAGGAGTCACAGCACCTTGAGTCCTCCAGTCCACAGCG 407 Query 662 TCCGGGACATTGCCTGCTGGGTCACAAACTGGTCTCTGCTTCTTGTGTAACCTCAAGGAA 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 TCCGGGACATTGCCTGCTGGGTCACAAACTGGTCTCTGCTTCTTGTGTAACCTCAAGGAA 347 Query 722 GACGTGTTCAACCCGAGAAAATGGGCCTTAAACTCAGAATTGGTCATATCTGCAAATCTA 781 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 346 GACGTGTTCAACCCGAGAAAATGGGCCTTAAACTCAGAATTGGTCATGTCTGCAAATCTG 287 Query 782 TTATCCGTTAGCTTAAAGGGCAAGTGGAGGGAGTTGATGTAGTCAATCAACTGGACGTTA 841 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 286 TTATCCGTTAGCTTAAAGGGCAAGTGGAGGGAGTTGATGTAGTCAATCAATTGGACGTTA 227 Query 842 GACTGATATATCCCAAACCGTAGCATCCACTCATCCCTTCCTCCATATAATTTGCTGTGG 901 ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 226 GACTGGTATATCCCAAACCGTAGCATCCACTCATCCCTTCCTCCATATAGTTTGCTGTGG 167 Query 902 GTTTTAAGCCACTTCTCGAACCGCTGCTTCAGGGTTTTGTGTGGGTCATACACAGAGGAA 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 GTTTTAAGCCACTTCTCGAACCGCTGCTTCAGGGTTTTGTGTGGGTCATACACAGAGGAA 107 Query 962 TCGACGGAACATAGCTTTGAAGCTATCAAGACAAAGCAAATCAAAACGGCAAGGGTCAGG 1021 | |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 106 TTGACGGAACATAGCTTTGAAGCTATCAAGACAAAGCATATCAAAACGACAAGGGTCAGG 47 Query 1022 TT 1023 || Sbjct 46 TT 45 Score = 529 bits (286), Expect = 4e-149 Identities = 300/307 (98%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 57 GCTTATGGAGATTCATGGACTCACTGCAAGGGATAGCTTGCCATCATAGCAATACCACAT 116 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1072 GCTTGTGGAGATTCATGGACTCACTGCAAGGGATAGCTTGCCAGCATAGCAATACCACAT 1013 Query 117 TTACCCGTGTCTTCACTTACACCACGCTCCATCCGTATGTAGCCTTCTTCACCCCAGCCA 176 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1012 TTACCCGTGTCTTCGCTTATACCACGCTCCATCCGTATGTAGCCTTCTTCACCCCAGCCA 953 Query 177 GTTCCCCATGAATTCTTTACGATCCAGTACTTTTGATCGCCTTCTACTCCATATCCAACA 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 GTTCCCCATGAATTCTTTACGATCCAGTACTTTTGATCGCCTTCTACTCCATATCCAACA 893 Query 237 ACAGTCACTCCATGGTTGAGATTTGTTCCACAGTAATTTGTGAAAACACCGGAGGAGTAG 296 |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct 892 ACAGTCACTCCATGGTTGAGATTTGTTCCACAGTAACTTGTGAAAACACCAGAAGAGTAG 833 Query 297 AGCTGAAAGATAAACCCACCAGCATCGATTCCAACTGATACTGGCTGTTGAGCTGCAGCG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 AGCTGAAAGATAAACCCACCAGCATCGATTCCAACTGATACTGGCTGTTGAGCTGCAGCG 773 Query 357 ATTTGTA 363 ||||||| Sbjct 772 ATTTGTA 766 Score = 176 bits (95), Expect = 6e-43 Identities = 103/107 (96%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 361 GTACCCTCTATGCCTGTGTATGGGTAGTCGGTCTCCGTGGCGAGTCCACCATTGGTTTTG 420 ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| Sbjct 688 GTACCCTCTATGCCTGTGTATGGGTAGTCGGTCTCGGTGGTGAGTCCACCATTGCTTTTG 629 Query 421 ATGAATTCAAATGCTGTTTCCATTAATCCGCCACTACAGCCTTTGTT 467 ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 628 ATGAATTCAAAGGCTGTTTCCATTAATCCGCCACTACAGCCTTTGTT 582 Score = 58.4 bits (31), Expect = 2e-07 Identities = 34/35 (97%), Gaps = 1/35 (3%) Strand=Plus/Minus Query 468 CTGCTACTGCAGAGAATGCCCAGCAACCTCCTGCA 502 ||||||||||||||||||||||||||||||| ||| Sbjct 495 CTGCTACTGCAGAGAATGCCCAGCAACCTCC-GCA 462 > Ahg470646 jgi|Araly1|470646|fgenesh2_kg.1__600__AT1G06265.2 Length=1019 Score = 560 bits (303), Expect = 1e-158 Identities = 413/462 (89%), Gaps = 23/462 (5%) Strand=Plus/Plus Query 1645 TCAGATGATTCTGAAGCAGTGCCAGAAAGGTTTATCTACAGAGAGGAATGTCGGAAAATG 1704 |||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 580 TCAGATGATTCTTAAGCAGCACCAGACAGGTTCATCTACAGAGAGGAATGTCGGAAAATG 639 Query 1705 AAGACAATGGTCATAAGGGGTGGCTGATTCTGTTTGCAGGAAAGATCCAGATATTAGACA 1764 ||||||||||||||||||||||| |||||||||||| |||||||||| || |||||| || Sbjct 640 AAGACAATGGTCATAAGGGGTGGTTGATTCTGTTTGAAGGAAAGATCTAGGTATTAGGCA 699 Query 1765 ACATGCTCTGGCGA-GCGAACCAGTCTTACTTGATGGTGACAACTCTTTTTGAGAAATTT 1823 ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 700 ACATGCTCTGG-GAAGCGAACCAGTCTTACTTGATGGTGACAACTCTTTTTGAAAAATTT 758 Query 1824 AGTTTCAGGTTCCAAACCATTGATGAAAGATAATGGAATCTTCAAGAATGAGGCAGAGCA 1883 |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| Sbjct 759 AGTTTCAGGTTCCAAACCATTGGTGGGAGATAGTGGAATCTTCAAGAATGAGGCAGAGCA 818 Query 1884 GAGAACATGAATACATTGAAACTCACCGGTCAAGTACTCAATTGCACCTTAACAACGCTG 1943 ||||||||||||||| ||||||||||||||||||| |||||| |||||||||| Sbjct 819 GAGAACATGAATACAATGAAACTCACCGGTCAAGT--------GCACCTGAACAACGCTG 870 Query 1944 GTCGCTAAGTATAAGCCCCTGCTTCGGTTCTGGATAGATGTTTCCGGTTTGGTTTAGCCG 2003 |||||| |||| || |||||||||||||||| |||||||||||||||||||| ||| ||| Sbjct 871 GTCGCTGAGTACAATCCCCTGCTTCGGTTCTAGATAGATGTTTCCGGTTTGGCTTAACCG 930 Query 2004 AATAAAATTAGACAGGCTATAGAGGAAATAGTCTTTAATTAATTTAATTTCGATGTAACT 2063 || ||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 931 AA----------CAGGCTATAGAGGAAATGGTCTTTAATGAATTTAATTTCGATGTAACT 980 Query 2064 AACAATAGTACATGTTTTAAGCGTTGATTAACCGTTaaaaaa 2105 ||||||| |||||||||||||||||||||||||| ||||| Sbjct 981 AACAATA---CATGTTTTAAGCGTTGATTAACCGTTCAAAAA 1019 Score = 462 bits (250), Expect = 4e-129 Identities = 377/432 (87%), Gaps = 34/432 (8%) Strand=Plus/Plus Query 1087 AAACGTAAAGGTACTCGTTGTAAAACTGGTGCTGATTGGCTTTCTCTGAAGATTGTTGAT 1146 |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 89 AAAC-TAAACGTACTCGTTGTAAAACTGGTGCTGATTGGGTTTCTCTGAAGATTGTTGAT 147 Query 1147 CCTTCCATTGTAAACTTTGGTGTTGACAATTCTTGAGTCCTTCTTTCTTTGTCA-TT-TC 1204 |||||| | | || || || ||||||||||||||||||||||| || || Sbjct 148 CCTTCC-------A---T--TG-TG--AA--CTTGAGTCCTTCTTTCTTTGTCATTTCTC 190 Query 1205 TAAATAAA-TACAAATTTTTGACCCAAGAAGATTCAGTTTCTTGAGCTATGGAAAAACAT 1263 |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 191 TAAATAAAGTACAATTTTTTGACCCAAGAAGATTCAGTTTCTTGAGCTATGAAAAAACAT 250 Query 1264 GTG-CTGGAGAAATTTGAGGCTTCCAGG-A-TCAAGTTCATTACAGTCAGAAACCCTGTT 1320 ||| | | |||||||||||||||||||| | | || ||| ||| |||||| || |||| Sbjct 251 GTGAC-GCAGAAATTTGAGGCTTCCAGGTACTTAA-TTC-TTATT-TCAGAA-CC-TGTT 304 Query 1321 GAGAAACTTTGTTCAGATGTGGTTCAAGACTTGCTTGCTGAAGCCTCTTTCGTTTATGGA 1380 ||||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||| Sbjct 305 GAGAAACTTTGCTCAGATGCGGTTCAAGACTTGCTTGCTAAAGCCTCTTTCGGTTATGGA 364 Query 1381 AAACCATTGCCTCCCCTTCTAATTATTACATGAATATGCTTTGAA---AAGAAATCATGA 1437 |||||| |||||||||||| ||| ||||||||||||||||||| |||||||| ||| Sbjct 365 AAACCAGTGCCTCCCCTTCAAATG-TTACATGAATATGCTTTGATTTGAAGAAATCTTGA 423 Query 1438 ATATGGAAAGAAGCCATGGGTATTGTTCAGCTAGAAAACTGAACCAAGGATGATGCTTGC 1497 ||||||||||||||||| | ||||||||||| |||||| ||||||||||||||||||||| Sbjct 424 ATATGGAAAGAAGCCATAGATATTGTTCAGCAAGAAAAGTGAACCAAGGATGATGCTTGC 483 Query 1498 TTTGTCATGCGG 1509 |||||||||||| Sbjct 484 TTTGTCATGCGG 495 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83189095080 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5