BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06270.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919342 jgi|Araly1|919342|scaffold_100623.1 1749 0.0
> Ahg919342 jgi|Araly1|919342|scaffold_100623.1
Length=1073
Score = 1749 bits (947), Expect = 0.0
Identities = 1032/1074 (96%), Gaps = 2/1074 (0%)
Strand=Plus/Plus
Query 314 TCAGGTCTCTGAGAATAGGAAATGGCAATTCGCTTGACGCATCTGCGAAAACCTCTTGCT 373
||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1 TCAGGTCTCGGAGAATAGGAAATGGCATTTCGCTTGACAAATCTGCGAAAACCTCTTGCT 60
Query 374 TATTCTCGGTCCTTTGATGTCTGCATTCCGTTTTTCCGGTCAATCTCGTCCTTTGAAGCG 433
||| |||||||||| ||| |||| |||||||||| ||||||||||| ||||||||||||
Sbjct 61 TATGCTCGGTCCTTCAATGCCTGCTTTCCGTTTTTTCGGTCAATCTCTTCCTTTGAAGCG 120
Query 434 GTTGAAAAGGCGATAAAATGTGCTGTTGAAACAAAGGAGTATCTTAGAATCCCCGAACTT 493
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 121 GTTGAAAAGGCGATAAAATGTGCTGTTGAGACAAAGGAGTATCTTAGAATCCCTGAACTT 180
Query 494 GTTGTTTCACTCAAAGAGCCTTACCAAAACTCAACGTTGTTTTCTTTTCTCTCTGCTTTC 553
|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 181 GTTGTTTCACTCAAAGAGCCTTACCAAAACTCAATGTTATTCTCTTTTCTCTCTGCTTTC 240
Query 554 CAACGTCATCATAGAATCAGAGTCATTGACGAAATCCTCCAAAGTTTTGTTCCTGTGAGA 613
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAACATCATCATAGAATCCGAGTCATTGACGAAATCCTCCAAAGTTTTGTTCCTGTGAGG 300
Query 614 CCTCGTTCACTGCCCAAGATTGTCTACTCCAGTCTTCTTACTTATTGCCTTCAGAGTTCC 673
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 CCTCGTTCTCTGCCCAAGATTGTCTACTCCAGTCTTCTTACTTACTGCCTTCAGAGTTCC 360
Query 674 GATCCTCTTCCTTTGTCTTTCGCAATCCTCCAACGCACTCTTCGTTCTGGCTGTCTACCT 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GATCCTCTTCCTTTGTCTTTCGCAATCCTCCAACGCACTCTTCGTTCTGGCTGTCTTCCT 420
Query 734 AACCCTCAGACTCATCTCCTTCTCTCTGATGCTTGGCTTGAACGGCGACGAGGATCCCAG 793
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 AACCCTCAGACTCAACTCCTTCTGTCTGATGCTTGGCTTGAACGGCGACGAGGATCCCAG 480
Query 794 TCTGTTGCAGATATTATTAATGAGATGAAATTGATTGGATACAGTCCTGATACTGGAACC 853
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTGTTGCTGATATTATTAATGAGATGAAATTGATTGGATACAGTCCTGATACTGGAACC 540
Query 854 TGCAATTACTTAGTGTCCTCTCTCTGTGCTGTTGATAAGTTGGATGAGGCGATTAAAGTT 913
|||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 541 TGCAATTATTTAGTGTCCTCTCTGTGTGCTGTTGATAAGTTGGATGAGGCCATTAAAGTA 600
Query 914 GTTGAGGAAATGAGTGCAGCTGGCTGTATTCCTGATGTGGAAAGTTATGGGGCGGTGATT 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTGAGGAAATGAGTGCAGCTGGCTGTATTCCTGATGTGGAAAGTTATGGGGCGGTGATT 660
Query 974 AATTCATTGTGTTTGGCTAGAAAGACT-ACTGATGTGGTGAAGATTGTCAAAGAGATGGT 1032
|| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 661 AACTCATTGTGTTTGGCTAGAAAGACTAAC-GATGTGGTGAAGATTGTCAAAGAGATGGT 719
Query 1033 GAGCAAAGCTGGGATCTCTCCACGGAAAGGGATGCTGACAAAAGTAGCAGCAGCTCTCAG 1092
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 GAGCAAAGCTGGAATTTCTCCACGGAAAGGGATGCTGACAAAAGTAGCAGCAGCTCTGAG 779
Query 1093 AGCCAACAGGGAAATTTGGAAAGCCATTGAGATGATCGAGTTTGTAGAAAGTCGGGATTA 1152
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 AGCCAACAGGGAAATTTGGAAAGCCATTGAGATGATGGAGTTTGTAGAAAGTCGGGATTA 839
Query 1153 CCCTGTGGAGTTTGAGAGTTATGAGGTAGTAGTCGAGGGTTGCCTGGAGGTTAGGGAATA 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CCCTGTGGAGTTTGAGAGTTATGAGGTAGTAGTCGAGGGTTGCCTGGAGGTTAGGGAATA 899
Query 1213 CATTTTGGCAGGGAAGGTGGTGATGAGAATGACTGATAGAGGGTTCATACCGTATATCAA 1272
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 900 CATTTTGGCAGGGAAGATGGTGATGAGAATGACTGATAGAGGGTTCATACCATATATCAA 959
Query 1273 GGTTAGGCAAAAAGTGGTTGAGCGTCTGATTAACATCGGTGAATGGAAGCTTGCTTGTAC 1332
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 GGTTAGGCAAAAAGTGGTGGAGCGTCTGATTAGCATCGGTGAATGGAAGCTTGCTTGTAC 1019
Query 1333 TGTTAGACAAAGGGTTTCTGAACTGAGGTCTTAGGTATTTCTCAGATAAGTGTT 1386
||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 TGTTAGACAAAGGCTTTCGGAACTGAGGTCTTAGGTATTTCTCAGATAAGTGTT 1073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5