BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06280.1
Length=643
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919343 jgi|Araly1|919343|scaffold_100624.1 920 0.0
> Ahg919343 jgi|Araly1|919343|scaffold_100624.1
Length=660
Score = 920 bits (498), Expect = 0.0
Identities = 587/629 (93%), Gaps = 9/629 (1%)
Strand=Plus/Plus
Query 3 ATGATGCAAAGGAACTCTAACAACACCAGCATCACCAGTAACATCTCCAATAACTCATCG 62
|||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 23 ATGATGCAAAGGAACTCTAACAACACCACCACCACCACAAACATCTCCAATAACTCATCG 82
Query 63 TCGCATCAAGCTTGTGCTTCATGCAAACATCAAAGGAAGAAATGCAACAACGAATGTATC 122
||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 83 TCGCATCAAGCTTGTGCATCATGTAAACATCAAAGGAAGAAATGTAACAATGAATGTATC 142
Query 123 TTATCGCCGTATTTCCCAGCCCGCAAGACTAAAGAGTTTCAGGCCGTGCACAAGGTCTTC 182
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 143 CTATCGCCGTATTTCCCAGCCCGCAAGACCAAAGAGTTTCAGGCCGTGCACAAGGTCTTC 202
Query 183 GGTGTCAGTAACGTACAAAAAATGGTACGGACGGTACGTGAAGAGGACCGTACCAAGCTC 242
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 203 GGTGTCAGTAACGTACAAAAAATGGTACGGACCGTACGTGAAGAGGACCGTACCAAGCTC 262
Query 243 TCTGATTCTTTAACATGGGAAGCTCTATGGAGACAGAAAGATCCGGTCCTTGGCTCCTAT 302
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 263 TCTGATTCTTTGACATGGGAAGCTCTCTGGAGACAGAAAGATCCGGTCCTTGGCTCCTAT 322
Query 303 GGAGAGTATAGGAGGATTTGTGAAGAGCTCAAGTTATACAAAAGCTTGGTTCATAACCAG 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 GGAGAGTATAGGAGGATTTGTGAAGAGCTCAAGTTATACAAAAGCTTGGTTCATAACCAA 382
Query 363 CCTCTCATTGGT--T-GGGATAATAATCAACGCGTATTTAACAATAATAGTAACAACAAG 419
||||| || ||| | |||||||||||||||| || || | |||||||||||||||||||
Sbjct 383 CCTCTTATCGGTAATTGGGATAATAATCAACGAGTGTTCAGCAATAATAGTAACAACAAG 442
Query 420 AACGGATTAGCGATGACGAATTCGAGTGGATCAGGAGGGTTTAGTGTTAACAACAATGGT 479
||||| ||||| |||| | ||||||||| || |||||||| |||||||||||||| |||
Sbjct 443 AACGGGTTAGCTATGA--A-TTCGAGTGGCTCGGGAGGGTTAAGTGTTAACAACAACGGT 499
Query 480 GTTGGTGTGAATCGGGAGATTGTCAACGGTGGATATGCATCAAGGAATGTGCAAGGTGGT 539
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 500 GTTGGTGTGAATCGGGAGATTGTCAACGTTGGATATACATCAAGGAATGTGCAAGGTGGC 559
Query 540 TGGGAAAATCTAAAGCACGATCAAAGGCAACAATGTTATGCAGTGATTAATAATGGTTTC 599
||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 560 TGGGAAAATTTGAAGCAAGATCAAAGGCAACAATGTTATGCAGTGATTAAT---GGTTTC 616
Query 600 AAACAACACTATCTCCCACTCTAAGTAAC 628
|||||||||||| ||||||||||||||||
Sbjct 617 AAACAACACTATGTCCCACTCTAAGTAAC 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23559962706
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5