BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G06280.1 Length=643 Score E Sequences producing significant alignments: (Bits) Value Ahg919343 jgi|Araly1|919343|scaffold_100624.1 920 0.0 > Ahg919343 jgi|Araly1|919343|scaffold_100624.1 Length=660 Score = 920 bits (498), Expect = 0.0 Identities = 587/629 (93%), Gaps = 9/629 (1%) Strand=Plus/Plus Query 3 ATGATGCAAAGGAACTCTAACAACACCAGCATCACCAGTAACATCTCCAATAACTCATCG 62 |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| Sbjct 23 ATGATGCAAAGGAACTCTAACAACACCACCACCACCACAAACATCTCCAATAACTCATCG 82 Query 63 TCGCATCAAGCTTGTGCTTCATGCAAACATCAAAGGAAGAAATGCAACAACGAATGTATC 122 ||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 83 TCGCATCAAGCTTGTGCATCATGTAAACATCAAAGGAAGAAATGTAACAATGAATGTATC 142 Query 123 TTATCGCCGTATTTCCCAGCCCGCAAGACTAAAGAGTTTCAGGCCGTGCACAAGGTCTTC 182 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 143 CTATCGCCGTATTTCCCAGCCCGCAAGACCAAAGAGTTTCAGGCCGTGCACAAGGTCTTC 202 Query 183 GGTGTCAGTAACGTACAAAAAATGGTACGGACGGTACGTGAAGAGGACCGTACCAAGCTC 242 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 203 GGTGTCAGTAACGTACAAAAAATGGTACGGACCGTACGTGAAGAGGACCGTACCAAGCTC 262 Query 243 TCTGATTCTTTAACATGGGAAGCTCTATGGAGACAGAAAGATCCGGTCCTTGGCTCCTAT 302 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 263 TCTGATTCTTTGACATGGGAAGCTCTCTGGAGACAGAAAGATCCGGTCCTTGGCTCCTAT 322 Query 303 GGAGAGTATAGGAGGATTTGTGAAGAGCTCAAGTTATACAAAAGCTTGGTTCATAACCAG 362 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 323 GGAGAGTATAGGAGGATTTGTGAAGAGCTCAAGTTATACAAAAGCTTGGTTCATAACCAA 382 Query 363 CCTCTCATTGGT--T-GGGATAATAATCAACGCGTATTTAACAATAATAGTAACAACAAG 419 ||||| || ||| | |||||||||||||||| || || | ||||||||||||||||||| Sbjct 383 CCTCTTATCGGTAATTGGGATAATAATCAACGAGTGTTCAGCAATAATAGTAACAACAAG 442 Query 420 AACGGATTAGCGATGACGAATTCGAGTGGATCAGGAGGGTTTAGTGTTAACAACAATGGT 479 ||||| ||||| |||| | ||||||||| || |||||||| |||||||||||||| ||| Sbjct 443 AACGGGTTAGCTATGA--A-TTCGAGTGGCTCGGGAGGGTTAAGTGTTAACAACAACGGT 499 Query 480 GTTGGTGTGAATCGGGAGATTGTCAACGGTGGATATGCATCAAGGAATGTGCAAGGTGGT 539 |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 500 GTTGGTGTGAATCGGGAGATTGTCAACGTTGGATATACATCAAGGAATGTGCAAGGTGGC 559 Query 540 TGGGAAAATCTAAAGCACGATCAAAGGCAACAATGTTATGCAGTGATTAATAATGGTTTC 599 ||||||||| | ||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 560 TGGGAAAATTTGAAGCAAGATCAAAGGCAACAATGTTATGCAGTGATTAAT---GGTTTC 616 Query 600 AAACAACACTATCTCCCACTCTAAGTAAC 628 |||||||||||| |||||||||||||||| Sbjct 617 AAACAACACTATGTCCCACTCTAAGTAAC 645 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23559962706 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5