BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06320.1
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg910318 jgi|Araly1|910318|Al_scaffold_0001_572 682 0.0
> Ahg910318 jgi|Araly1|910318|Al_scaffold_0001_572
Length=603
Score = 682 bits (369), Expect = 0.0
Identities = 531/607 (87%), Gaps = 20/607 (3%)
Strand=Plus/Plus
Query 75 gaagaatgaagaatggaggagagaagaagataacagtggaagaaTACGTTGAGTTCTGCA 134
||| ||||| | ||||||||||||||||||||| ||||||||||||||||| |||| ||
Sbjct 3 GAA-AATGACGTTTGGAGGAGAGAAGAAGATAACTGTGGAAGAATACGTTGATTTCTTCA 61
Query 135 ACTCTGGGAATTCCATCCATTTCACCATCGCTTACCTCAATCAGATCCTTCATTTGCATG 194
||||||||||||| | | ||||||||| |||||||||||||||||||||| ||||||
Sbjct 62 CCTCTGGGAATTCCCGCAACTTCACCATCTCTTACCTCAATCAGATCCTTCACATGCATG 121
Query 195 GTTTCCGAAAGCTTCACAAATTACAGAAGAAAATTGTAGAAGAAGCCGTGGACT-CACTG 253
|||||||||||||||||||||| |||||||||||||| | |||||||| || | |||||
Sbjct 122 GTTTCCGAAAGCTTCACAAATTGCAGAAGAAAATTGTTGGCGAAGCCGTTGA-TACACTG 180
Query 254 GATCTTCTAGATCTCTCTCGCTCAACTCTGAAACAAGTCACTGACTCCTCGCCGTCATCG 313
||||||||||||||||||||||||||||||||| ||| ||| | ||| ||||||||||||
Sbjct 181 GATCTTCTAGATCTCTCTCGCTCAACTCTGAAAGAAGCCACAGTCTCGTCGCCGTCATCG 240
Query 314 TCAT-CCCTAACTCTCGACGAAGTGATAAGCGACATCGAAGCTCTGAAATGGCAGGAATG 372
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TC-TCCCCTAACTCTCGACGAAGTGATAAGCGACATCGAAGCTCTGAAATGGCAGGAATG 299
Query 373 CTGCTTTACCTCACTCCAGATCATCAATTCCCAGGAAACTACTCCATCAGAAATCTCCAA 432
|||||| ||||| ||||||||||||||||||||||||| |||| ||||| | ||||
Sbjct 300 CTGCTTAACCTCGCTCCAGATCATCAATTCCCAGGAAATTACTGGATCAGTG--C-CCAA 356
Query 433 ACCGAAACAGAA-A--TCGAACAAGAGAAAGAAAGCTACTATGAAGAAATCTCTCAACAC 489
||| |||||||| | || |||||||||||||||||||||||||||||||| |||||| |
Sbjct 357 ACCCAAACAGAAGAAATCCAACAAGAGAAAGAAAGCTACTATGAAGAAATCGCTCAACGC 416
Query 490 TAATTTCGGTGATGAGAATGACAACACAATGATGATGATGCT---CCCA---A--C-GAA 540
||||||||| |||||||| || |||||||||||||||||| | |||| | | ||
Sbjct 417 TAATTTCGGAGATGAGAACGAAAACACAATGATGATGATGATGATCCCAGCTATACCGAG 476
Query 541 AAAGATGAGAAACAAAAAGACGACGAAGAACCTCAAAAGCATCTCCACATTTGTCAAAGA 600
||||||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||| ||
Sbjct 477 AAAGATGAGAAACAAAAAGGCGAAGAAGAACCTCAAAAGCATCACCACATTAGTCAATGA 536
Query 601 CGCTTCATCAGCATCCAAACCACTCTCTGCCAACAATTTATCATCAAGGTTTTCTTCTTT 660
|||| |||||||| | ||||||||||||| | |||||| || ||||||||| ||||| |
Sbjct 537 CGCTGCATCAGCAACGAAACCACTCTCTGACTGCAATTTCTCTTCAAGGTTTACTTCTAT 596
Query 661 TCCATAA 667
||| |||
Sbjct 597 TCCTTAA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24474912714
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5