BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G06330.1

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg311711 jgi|Araly1|311711|fgenesh1_pm.C_scaffold_1000491           721    0.0  


> Ahg311711 jgi|Araly1|311711|fgenesh1_pm.C_scaffold_1000491
Length=438

 Score =  721 bits (390),  Expect = 0.0
 Identities = 423/439 (96%), Gaps = 2/439 (0%)
 Strand=Plus/Plus

Query  43   ATGAGAGTTCACATGGATTGTGTGGGATGCGAAAGCAGAGTTAAAAATGCGCTTCAAAAG  102
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  1    ATGAGAGTTCACATGGATTGTGTGGGGTGCGAAAGCAGAGTTAAAAATGCCCTTCAAAAG  60

Query  103  ATGAGAGGAGTGGATGCA-GTTGAAATCGACATGGTGCAGCAGAAAGTGACGGTGACTGG  161
            |||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGAGAGGAGTGGATG-AGGTAGAAATCGACATGGTGCAGCAGAAAGTGACGGTGACTGG  119

Query  162  CTATGCCGATCAGAAGAAGGTTCTGAAGAAAGTGAGAAAAACCGGCAGGCGAGCTGAGCT  221
            ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  120  CTACGCCGATCAGAAGAAGGTTCTGAAGAAAGTGAGAAAAACCGGCCGGCGAGCTGAGCT  179

Query  222  ATGGCAGCTTCCTTATAACCCTGACCACATGGGCGGAAGCAGCAGCAACGGCGGCTACTT  281
            |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct  180  ATGGCAGCTTCCTTATAACCCTGAGCACATGGGCGGAAGCAGCAGCAACGGGGGCTACTT  239

Query  282  CTACAACCCTCAGGGCTGCAACGGCCCAATCAACCACGCCGCACCAGTCCCGACTTCGTC  341
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  240  CTACAACCCTCATGGCTGCAACGGCCCAATCAACCACGCCGCACCAGTCCCGACTTCATC  299

Query  342  TTACAATTATTACAAGCATGGCTACGATAGCAATGACTATTCGTCTTACCGCCACCACCC  401
            |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  300  TTACAACTATTACAAGCATGGATACGACAGCAATGACTATTCGTCTTACCGCCACCACCC  359

Query  402  TGTTCATGCCTCTATCTTCAGCCACCAAACTGGTTCTAAGTTTAGTGATGAGAATCCTAA  461
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  360  TGTTCATGCCTCTATCTTCAGCCACCAAACTGGTTCTAAGTTTAGTGACGAGAATCCTAA  419

Query  462  CGCTTGTTCTATCATGTGA  480
            |||||||||||| ||||||
Sbjct  420  CGCTTGTTCTATAATGTGA  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17398948584


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5