BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G06340.1

Length=731
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919349 jgi|Araly1|919349|scaffold_100630.1                        595    1e-169


> Ahg919349 jgi|Araly1|919349|scaffold_100630.1
Length=467

 Score =  595 bits (322),  Expect = 1e-169
 Identities = 389/422 (92%), Gaps = 1/422 (0%)
 Strand=Plus/Plus

Query  1    GTTTGAATCATACTAAAATCCTTAACAATGGAGTTCGTGAAAGGAGATCAAGTTGAAGTC  60
            ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GTTTG-ATCATACTTAAATCCTTAACAATGGAGTTCGTGAAAGGAGATCAAGTTGAAGTC  59

Query  61   TGCAGCAAAGAAGACGGTTTCTTAGGGTCTTACTTCGGTGCCACGGTTGTATCAAAGACT  120
            ||||||||||||||||| ||||| |||||||||||||||||||||||  | || ||||||
Sbjct  60   TGCAGCAAAGAAGACGGCTTCTTGGGGTCTTACTTCGGTGCCACGGTACTGTCGAAGACT  119

Query  121  CCCGAGGGATCTTACTACAAGATTAAGTACAAGAATCTTGTGTCGGACACGGATCAATCT  180
            || |||||||| ||||||||| ||||||||||||||||||||||||| | ||||||||||
Sbjct  120  CCGGAGGGATCATACTACAAGGTTAAGTACAAGAATCTTGTGTCGGAGAAGGATCAATCT  179

Query  181  AAACGGTTAGTCGAAGTCATCTCAGCCGACGAACTACGTCCGATGCCTCCCAAATCTCTC  240
            |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  180  AAACCGTTAATCGAAGTCATCTCAGCCGACGAACTCCGTCCGATGCCTCCCAAATCTCTC  239

Query  241  CACGTATTGATTCGCTGCGGAGATAAGGTCGATGCTTTCGACAAAGACGGGTGGTGGGTC  300
            | |||| || ||||||||  ||| |||||||||||||| |||||||||||||||||||||
Sbjct  240  CCCGTAATGTTTCGCTGCCAAGACAAGGTCGATGCTTTAGACAAAGACGGGTGGTGGGTC  299

Query  301  GGAGAGGTCACCGCTGTGAGAAGAAACATCTACTCTGTTTACTTTTCGACGACCGACGAG  360
            ||||||||||||||||||||| | ||||| |||||||||||||||| |||||||| ||||
Sbjct  300  GGAGAGGTCACCGCTGTGAGAGGCAACATGTACTCTGTTTACTTTTTGACGACCGGCGAG  359

Query  361  GAGCTCGAGTACCCGCTTTACTCTCTGAGAAAGCATCACGAATGGGTTAACGGATCCTGG  420
            |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||  ||||
Sbjct  360  GAGCTCCAGTACCCGCTTTACTCTCTGAGAAGGCATCTCGAATGGGTTAACGGAGACTGG  419

Query  421  GT  422
            ||
Sbjct  420  GT  421



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26914779402


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5