BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06350.1
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470653 jgi|Araly1|470653|fgenesh2_kg.1__607__AT1G06350.1 1332 0.0
Ahg470654 jgi|Araly1|470654|fgenesh2_kg.1__608__AT1G06360.1 1014 0.0
Ahg470621 jgi|Araly1|470621|fgenesh2_kg.1__575__AT1G06090.1 593 7e-169
Ahg910293 jgi|Araly1|910293|Al_scaffold_0001_547 540 9e-153
> Ahg470653 jgi|Araly1|470653|fgenesh2_kg.1__607__AT1G06350.1
Length=959
Score = 1332 bits (721), Expect = 0.0
Identities = 884/961 (92%), Gaps = 17/961 (2%)
Strand=Plus/Plus
Query 1 TTATAACTCAAACAAATACAA-T--T---C-GT-CGATATGTGTGATCCCACTAGAGACG 52
||||||||||||| ||||||| | | | || ||||||||||||||||||||||||||
Sbjct 1 TTATAACTCAAACGAATACAATTCCTCAACGGTCCGATATGTGTGATCCCACTAGAGACG 60
Query 53 ATGGCTCCAGCCGAAGCAGAGTGGTGAGTACTATGCAAAAGAGGGCGTATTTTCAGAGAC 112
||| |||||||| |||||||| ||| |||| || | |||| ||||||||||||||||||
Sbjct 61 ATGTCTCCAGCCAAAGCAGAGCGGTCAGTA-TA-G-AAAAAAGGGCGTATTTTCAGAGAA 117
Query 113 AATGGCCGTTGGTCGATGTCGTAAGAGCGTCAGTCGTTGTGATTGTGCACTTTTTGTGTC 172
||||||| ||||||||||| ||||||||| | ||||||||| ||||||||||||||||
Sbjct 118 AATGGCCCTTGGTCGATGTTATAAGAGCGTTAACCGTTGTGATAGTGCACTTTTTGTGTC 177
Query 173 TCTTGGCGCCGTTTAACT-TCAAATGGGAAGCTTTACGGTTCGGTTTGGTGCTCTTCGCG 231
|||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| |
Sbjct 178 TCTTGGCGCCGTTTAACTAT-GAATGGGAAGCTTTTCGGTTCGGTTTGGTGCTCTTCGTG 236
Query 232 TTGACTACACTCAGCATCACATTCTCATTCCATAGGAACTTGTCTCACCGTAGCTTCAAG 291
| ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 237 ATAACTACACTCAGCATCACCTTCTCATACCATAGGAACTTGTCTCACCGGAGCTTCAAG 296
Query 292 ATACCAAAATGGCTCGAATATCCTTGGGCTTATTCTGCTGTTTTCGCTCTTCAGGGTGAT 351
|| || |||||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 297 ATCCCGAAATGGATCGAATATCCTTTTGCTTATTCTGCTGTTTTCGCTCTCCAGGGTGAT 356
Query 352 CCAATGGATTGGGTGAGCATACATAGGTTCCATCACCAGTTCACAGATTCGGACCGCGAC 411
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 357 CCAATGGATTGGGTGAGCATACATAGGTTCCATCACCAGTTCACGGATTCTGACCGTGAC 416
Query 412 CCACATAGCCCTAAAGAAGGATTATTGTTCAGCCATATCTTGTGGATATTTGACACCCAA 471
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 417 CCACATAGCCCTAAAGAAGGATTATGGTTCAGCCATATATTGTGGATATTTGACACCCAA 476
Query 472 TACATCAAATACAAGTGTGGAGGACGTGACAACGTATTGGACTTGAAGAAGCAATGGTTT 531
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 TACATCAAATACAAGTGTGGAGGACGTGACAACGTAATGGACTTGAAGAAGCAATGGTTC 536
Query 532 TATAAGTTTCTACGAAGGACTATTGCTGTTCACATCTTAATGTTTTGGACCATCCTCTAT 591
||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 537 TATAAGTTTCTACGAAGGACTATTGCTCTTCACATCGCAATGTTTTGGACCGTCCTCTAT 596
Query 592 CTCTATGGTGGTTTACCTTACCTTACATGCGGCGGGGGCGTTGGAATTTTTATCGGGTAT 651
||||| |||||||||||||||||||||||||||||||| |||||| | | || ||||||
Sbjct 597 CTCTACGGTGGTTTACCTTACCTTACATGCGGCGGGGGTGTTGGAGGTGTGATAGGGTAT 656
Query 652 CACGTGACATGGCTCGTAAACTCGGCATGCCATATTTGGGGTTCAAGGTCGTGGAATACT 711
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 657 CACGTGACCTTTCTCGTAAACTCGGCATGCCATATTTGGGGTTCAAGGTCGTGGAAGACT 716
Query 712 AAAGACACATCTCGTAACGTTTGGTGGTTAAGTTTGTTTACGATGGGAGAAAGTTGGCAC 771
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 717 AAAGACACATCTCGTAACGTTTGGTGGTTAAGTTTGTTTACGATGGGAGAGAGTTGGCAC 776
Query 772 AACAACCATCACGCGTTTGAGTCATCGGCGAGGCAAGGATTGGAGTGGTGGCAGATAGAC 831
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AACAACCACCACGCGTTTGAGTCATCGGCGAGGCAAGGATTGGAGTGGTGGCAGATAGAC 836
Query 832 ATAACTTGGTACCTCATTCGACTATTTGAGGTTCTCGGTAT-AGCCACTGATGTGAAATT 890
||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||
Sbjct 837 ATAACTTGGTACCTCATTCGACTATTTGAAGTTCTTGG-ATTAGCCACTGATGTGAAATT 895
Query 891 GCCCTCGGAACT-CCAGAAACAAAAGATGGCTCTCGTTCGTTAATGTTTATTCTGAAATC 949
|||||||| || |||||||||||||||||| |||||||||||| |||||| ||| |||
Sbjct 896 ACCCTCGGA-CTTCCAGAAACAAAAGATGGCGATCGTTCGTTAATATTTATTTTGAGATC 954
Query 950 T 950
|
Sbjct 955 T 955
> Ahg470654 jgi|Araly1|470654|fgenesh2_kg.1__608__AT1G06360.1
Length=984
Score = 1014 bits (549), Expect = 0.0
Identities = 816/943 (87%), Gaps = 26/943 (3%)
Strand=Plus/Plus
Query 3 ATAACTCAAACAAATACAA-T--TCGTCGAT--ATGTGTGATCCCACTAGAGACGATGGC 57
|||||||||||||| |||| | || || | ||||||||||||| |||||| ||||||
Sbjct 10 ATAACTCAAACAAAAACAAGTCCTCAACGGTCGATGTGTGATCCCATTAGAGAAGATGGC 69
Query 58 TCCAGCCGAAGCA-GAGTGGTGAGTACTATGCAAAAGAGGGCGTATTTTCAGAGACAATG 116
|| |||| ||| | | | |||||| | | |||| ||| ||||| |||| ||| ||||
Sbjct 70 TCTAGCCAAAG-AGGCGCCTTGAGTA--A-GGAAAAAAGGCCGTATATTCATAGAGAATG 125
Query 117 GCCGTTGGTC-GATGTCGTAAGAGCGTCAGTCGTTGTGATTGTGCACTTTTTGTGTCTCT 175
| || ||| | ||| | ||||||||| | |||| || |||||||||||||||||||||
Sbjct 126 GTCG-TGGGCTGATATAATAAGAGCGTTAACCGTTATGGTTGTGCACTTTTTGTGTCTCT 184
Query 176 TGGCGCCGTTTAACTTCAAATGGGAAGCTTTACGGTTCGGTTTGGTGCTCTTCGCGTTGA 235
|||| |||||||||| ||||||||||||| ||||||||||||| ||||||| ||| ||||
Sbjct 185 TGGCACCGTTTAACTACAAATGGGAAGCTCTACGGTTCGGTTTTGTGCTCTACGCATTGA 244
Query 236 CTACACTCAGCATCACATTCTCATTCCATAGGAACTTGTCTCACCGTAGCTTCAAGATAC 295
|| |||||||||| |||||||||| ||||||||||||| ||||||| ||||||||| | |
Sbjct 245 CTTCACTCAGCATTACATTCTCATACCATAGGAACTTGGCTCACCGGAGCTTCAAGCTTC 304
Query 296 CAAAATGGCTCGAATATCCTTGGGCTTATTCTGCTGTTTTCGCTCTTCAGGGTGATCCAA 355
| |||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 305 CGAAATGGCTTGAATATCCTTTAGCTTATTTTGCTGTTTTTGCTCTTCAGGGTGATCCGT 364
Query 356 TGGATTGGGTGAGCATACATAGGTTCCATCACCAGTTCACAGATTCGGACCGCGACCCAC 415
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 365 TGGATTGGGTGAGCATACATAGGTTCCATCACCAGTTCACTGATTCTGACCGTGACCCAC 424
Query 416 ATAGCCCTAAAGAAGGATTATT-GTTCAGCCATATCTTGTGGATATTTGACACCCAATAC 474
||||||||| |||||||| || |||||| ||| | | |||||||| |||||| | ||
Sbjct 425 ATAGCCCTATCGAAGGATT-TTGGTTCAGTCATGTGTGGTGGATATGTGACACTCGTTAT 483
Query 475 ATCAAATACAAGTGTGGAGGACGTGACAACGT-ATTGGACTTGAAG-AAGCAATGGTTTT 532
|||||||| ||||||||||||||| ||||||| | ||||||||||| || |||||||| |
Sbjct 484 ATCAAATATAAGTGTGGAGGACGTAACAACGTGA-TGGACTTGAAGCAA-CAATGGTTCT 541
Query 533 ATAAGTTTCTACGAAGGACTATTGCTGTT-CACATCTTAATGTTTTGGACCATCCTCTAT 591
| | ||||||||||| ||| |||| | || ||| |||||||||||||||| ||||||||
Sbjct 542 ACAGGTTTCTACGAATGACAATTGGT-TTCCACGTCTTAATGTTTTGGACTGTCCTCTAT 600
Query 592 CTCTATGGTGGTTTACCTTACCTTACATGCGGCGGGGGCGTTGGAATTTTTATCGGGTAT 651
||||||||||||||||||||||||||||||||||||||||||||| | | || |||||
Sbjct 601 CTCTATGGTGGTTTACCTTACCTTACATGCGGCGGGGGCGTTGGAGGTGTGATTGGGTAC 660
Query 652 CACGTGACATGGCTCGTAAACTCGGCATGCCATATTTGGGGTTCAAGGTCGTGGAATACT 711
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 661 CACGTGACATGGCTCGTAAACTCGGCATGCCATATTTGGGGTTCGAGGTCATGGAAGACT 720
Query 712 AAAGACACATCTCGTAACGTTTGGTGGTTAAGTTTGTTTACGATGGGAGAAAGTTGGCAC 771
||||||||||||||||||||||||||| |||| || ||||| |||||||| ||||||||
Sbjct 721 AAAGACACATCTCGTAACGTTTGGTGGCTAAGCTTATTTACAATGGGAGAGAGTTGGCAT 780
Query 772 AACAACCATCACGCGTTTGAGTCATCGGCGAGGCAAGGATTGGAGTGGTGGCAGATAGAC 831
|| || || ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 781 AATAATCACCACGCGTTTGAGTCATCAGCGAGGCAAGGATTGGAGTGGTGGCAAATAGAT 840
Query 832 ATAACTTGGTACCTCATTCGACTATTTGAGGTTCTCGGTAT-AGCCACTGATGTGAAATT 890
|| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 841 ATCACTTGGTATCTCATTCGACTATTTGAGGTTCTCGG-ATTAGCCACTGATGTGAAATT 899
Query 891 GCCCTCGGAACTCCAGAAACAAAAGAT-GGCTCTCG-TTCGTT 931
|||||||||| | ||||||| || || |||||| | ||||||
Sbjct 900 GCCCTCGGAATTTCAGAAACGGAA-ATTGGCTCT-GATTCGTT 940
> Ahg470621 jgi|Araly1|470621|fgenesh2_kg.1__575__AT1G06090.1
Length=941
Score = 593 bits (321), Expect = 7e-169
Identities = 722/909 (79%), Gaps = 53/909 (6%)
Strand=Plus/Plus
Query 49 GACGATGGCTCCAGCCGAAGCAGAGTGGTGA-GTACTATGCAAAAGAGGGCG-T-ATTTT 105
||||||||||| |||| ||||| || ||| | ||| | |||| || ||| | ||||
Sbjct 58 GACGATGGCTCTAGCCAAAGCAAAGCGGT-ACGTA--GGGGAAAA-AGAGCGTTCTTTTT 113
Query 106 CAGAGACAATGG--CCGTTGGTCGATGTCGTAAGAGCGTCAGTC-GTTGTGAT-TGTGCA 161
||| || ||||| ||| | ||||||| | ||||| || | | |||| | | ||||||
Sbjct 114 CAG-GA-AATGGACCCG--GATCGATGTAATGAGAGCTTC-GGCTGTTG-GGTCTGTGCA 167
Query 162 CT-TTTTGTGTCTCTTGGCGCCGTTTAACTTCAAATGGGAAGCTTTACGGTTCGGTTTGG 220
| | |||||||| ||||| |||||||||||||||||||||||||| ||||| ||| ||
Sbjct 168 -TCTATTGTGTCTATTGGCACCGTTTAACTTCAAATGGGAAGCTTTTCGGTTTGGTGTGA 226
Query 221 TGCTCTTCGC-GT--TGACTACACTCAGCATCACATTCTCATTCCATAGGAACTTGTCTC 277
| || |||| | |||||| |||||||| ||||| |||| ||||||||||||| |||
Sbjct 227 T--TC-TCGCTATAGTGACTAGTCTCAGCATTACATTTTCATACCATAGGAACTTGACTC 283
Query 278 ACCGTAGCTTCAAGATACCAAAATGGCTCGAATATCCT-TGGGCTTATTCTGCTGTTTTC 336
|||| ||||| ||| | || |||||||| |||||| || | ||||| |||| |||||
Sbjct 284 ACCGGAGCTTTAAGCTCCCTAAATGGCTTGAATAT-CTATTCGCTTACACTGCCCTTTTC 342
Query 337 GCTCTTCAGGGTGATCCAATGGATTGGGTGAGCATACATAGGTTCCATCACCAGTTCACA 396
|| ||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||
Sbjct 343 GCGCTTCAGGGTCATCCGATAGATTGGGTGAGCACGCATAGGTTCCATCACCAGTTCACA 402
Query 397 GATTCGGACCGCGACCCACATAGCCCTAAAGAAGGATTATTG-TTCAGCCATATCTTGTG 455
||||| ||||| ||||||||||| |||| ||||||||| ||| ||||| || |||||||
Sbjct 403 GATTCAGACCGTGACCCACATAGTCCTATAGAAGGATT-TTGGTTCAGTCACGTCTTGTG 461
Query 456 GATATTTGACACCCAAT-ACATCAAATACAAGTGTGGAGGACGTGACAACGT-ATTGGAC 513
|||||| |||||| | | | |||| | | ||||||||||||||||||||||| || ||||
Sbjct 462 GATATTCGACACC-AGTTATATCAGAGAAAAGTGTGGAGGACGTGACAACGTGAT-GGAC 519
Query 514 TTGAAGAAGCAATGGTTTTATAAGTTTCTACGAAGGACTATTG-CTGTTCACATCTTAAT 572
|||||||| |||||||| |||| |||||| |||| || |||| | | ||||||||| |
Sbjct 520 TTGAAGAAACAATGGTTCTATAGGTTTCTTCGAAACACAATTGGCC-TCCACATCTTA-T 577
Query 573 G-TTTTGGAC-CATCCTCTATCTCTATGG--TGGTTTACCTTACCTTACATGCGGCGGGG 628
|||||||| | || ||||| | ||||| |||| |||||||||| || ||||||| ||
Sbjct 578 CATTTTGGACTC-TCGTCTAT-T-TATGGGGTGGTCTACCTTACCTAACTTGCGGCGTGG 634
Query 629 GCGTTGGAATTTTTATCGGGTATCA-CGTGACATGGCTCGTAAACTCGGCATGCCATATT 687
| || ||| ||||| || || || ||| |||||| ||||||| ||||||||||||
Sbjct 635 GTGTGGGAGGAGCAATCGGTTA-CAACGGGACTTGGCTCATAAACTCAGCATGCCATATT 693
Query 688 TGGGGTTC--AAGGTCGTGGAATACTAAAGACACATCTCGTAACGTTTGGTGGTTAAGTT 745
||||| | ||| | |||||||| || ||||| |||||||||||||||||| || |
Sbjct 694 TGGGGCACGCAAG--CATGGAATACCAAGGACACTTCTCGTAACGTTTGGTGGCTAGGGC 751
Query 746 TGTTTACGATGGGAGAAAGTTGGCACAACAACCATCACGCGTTTGAGTCATCGGCGAGGC 805
|| ||||||||||| || |||||||||||||| || || |||||| | ||||| || |
Sbjct 752 CATTCACGATGGGAGAGAGCTGGCACAACAACCACCATGCCTTTGAGGCGTCGGCTAGAC 811
Query 806 AAGGATTGGAGTGGTGGCAGATAGACATAACTTGGTACCTCATTCGACTATTTGAGGTTC 865
| ||| |||| |||| ||| ||||| ||||||||||||||||| | | || ||| ||
Sbjct 812 ACGGACTGGAATGGTATCAGGTAGACTTAACTTGGTACCTCATTTGGTTCTTCCAGGCTC 871
Query 866 TCGGTATAGCCACTGATGTGAAATTGCCCT-CGGAA-CTCCAGAAACAAAAGATGGCTCT 923
||||| ||||||| ||||| |||||||| | | || ||| |||||| ||||||||| |
Sbjct 872 TCGGTTTAGCCACCGATGTCAAATTGCC-TACCGATGCTC-AGAAACGCAAGATGGCTTT 929
Query 924 CGTTCGTTA 932
|| ||||||
Sbjct 930 CGCTCGTTA 938
> Ahg910293 jgi|Araly1|910293|Al_scaffold_0001_547
Length=900
Score = 540 bits (292), Expect = 9e-153
Identities = 728/931 (78%), Gaps = 59/931 (6%)
Strand=Plus/Plus
Query 31 ATGTGTGATC-CCACT-AGAGACGATGGCTCCAGCCGAAGCAGAGT-GGTGAGTACTATG 87
||| |||| | ||||| || ||||||||||| |||| || || | | ||| ||| | |
Sbjct 1 ATGAGTGA-CACCACTAAG-GACGATGGCTCTAGCCAAAACA-AATCAGTGCGTA--AGG 55
Query 88 -CAAAAGAGGGCGTATTTTCAGAGACAATGG-CCGTTGGTCGATGTCGTAAGAGCGTCAG 145
||||||| || | |||| || || ||||| || | ||||||| | ||||| || |
Sbjct 56 AAAAAAGAGCGCCTTTTTTAAG-GA-AATGGACC-CAGTTCGATGTTGGGAGAGCTTC-G 111
Query 146 TC-GTTGTG-ATTGTGCACT-TTTTGTGTCTCTTGGCGCCGTTTAACTTCAAATGGGAAG 202
| |||| | || ||||| | | |||||||| ||||| || ||||||| |||||||||||
Sbjct 112 ACTGTTG-GAATCGTGCA-TCTGTTGTGTCTATTGGCTCCTTTTAACTACAAATGGGAAG 169
Query 203 CTTTACGGTTCGGTTTGGTGCTCTTCGCGT--TGACTACA-CTCAGCATCACATTCTCAT 259
| || ||||||||| | || | | | |||| | | |||||||| |||||||| |
Sbjct 170 CATTGCGGTTCGGTACAATTATC-AC-CATAGTGAC-AAACCTCAGCATTACATTCTCGT 226
Query 260 TCCATAGGAACTTGTCTCACCGTAGCTTCAAGA-TACCAAAATGGCTCGAATATCC-TTG 317
||||||||||||| ||||||| ||||| | | |||| |||||||| |||||||| ||
Sbjct 227 ACCATAGGAACTTGACTCACCGGAGCTT-TACACTACCTAAATGGCTTGAATATCCATT- 284
Query 318 GGCTTATTCTGCTGTTTTCGCTCTTCAGGGTGATCCAATGGATTGGGTGAGCATACATAG 377
|||||||||||| |||| || ||||||||||||||| |||||||||||||||| |||||
Sbjct 285 CGCTTATTCTGCTCTTTTTGCACTTCAGGGTGATCCATTGGATTGGGTGAGCATTCATAG 344
Query 378 GTTCCATCACCAGTTCACAGATTCGGACCGCGACCCACATAGCCCTAAAGAAGGATTATT 437
||||||||||||||||||||||| ||||| || ||||||||||||| |||||||| |
Sbjct 345 ATTCCATCACCAGTTCACAGATTCTGACCGTGATCCACATAGCCCTATCGAAGGATTCTG 404
Query 438 GTTCAGCCATATCTTGTGGATATTTGACACCCAATACATCAAATACAAGTGTGGAGGACG 497
|||||| ||| | ||||||||||||||| || |||| |||| | | ||||| ||| ||||
Sbjct 405 GTTCAGTCATGTTTTGTGGATATTTGACTCCGAATATATCAGAGAAAAGTGCGGAAGACG 464
Query 498 TGACAACGT-ATTGGACTTGAAG-AAGCAATGGTTTTATAAGTTTCTACGAAGGACTATT 555
| ||||||| | ||||||||||| || |||||||| || | ||||||| || ||| |||
Sbjct 465 TAACAACGTGA-TGGACTTGAAGCAA-CAATGGTTCTACAGGTTTCTAAAAAAGAC-ATT 521
Query 556 -GCTGTTCACATCTTAATGTTTTGGACCATCCTCTATCTCTAT--GGTGGTTTACCTTAC 612
| | | |||||||| | ||||||||| || |||| || ||| |||||| ||||||||
Sbjct 522 GGTTCTCCACATCTTTGTATTTTGGACCCTCATCTA-CT-TATGGGGTGGTCTACCTTAC 579
Query 613 CTTACATGCG-GCGGGGGCGT-TGGAATTTTTA-TCGGGTATCACGTGACATGGCTCGTA 669
|| || || | || ||| | ||| | | ||| || |||| ||| |||||||||
Sbjct 580 CTAACTTG-GACCGTGGG-TTCTGG-AGGAGCATTCGCTTACCACGGGACTTGGCTCGTA 636
Query 670 AACTCGGCATGCCATATTTGGGGTTC--AAGGTCGTGGAATACTAAAGACACATCTCGTA 727
|||||||||||||||||||| ||||| ||| | |||| | || || ||||| |||||||
Sbjct 637 AACTCGGCATGCCATATTTGTGGTTCGCAAG-T-GTGGCACACCAATGACACCTCTCGTA 694
Query 728 ACGTTTGGTGGTTAA-GTTTGTTTACGATGGGAGAAAGTTGGCACAACAACCATCACGCG 786
||||||||||| || | | || || |||||||| || |||||||||||||| || ||
Sbjct 695 ACGTTTGGTGGCTAGCGCTA-TTGACTATGGGAGAGAGCTGGCACAACAACCACCATGCC 753
Query 787 TTTGAGTCATCGGCGAGGCAAGGATTGGAGTGGTGGCAGATAGACATAACTTGGTACCTC 846
|||||| | ||||| ||||| ||| | || |||| ||| ||||||||||||||||||||
Sbjct 754 TTTGAGGCGTCGGCTAGGCATGGACTAGAATGGTATCAGTTAGACATAACTTGGTACCTC 813
Query 847 ATTCGACTATTTGAGGTTCTCGG-TATAGCCACTGATGTGAAATTGCCCT-CGGA--ACT 902
||||| | ||| ||| |||||| | ||||||| |||| |||||||| | | || | |
Sbjct 814 ATTCGGTTCTTTCAGGCTCTCGGCT-TAGCCACCAATGTCAAATTGCC-TACCGATGA-T 870
Query 903 CCAGAAACAAAAGATGGCTCTCGTTCGTTAA 933
| |||||| ||||||||| || |||||||
Sbjct 871 C-AGAAACGCAAGATGGCTATCCCTCGTTAA 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42888281625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5