BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06360.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470654 jgi|Araly1|470654|fgenesh2_kg.1__608__AT1G06360.1 1565 0.0
Ahg470653 jgi|Araly1|470653|fgenesh2_kg.1__607__AT1G06350.1 1038 0.0
Ahg910293 jgi|Araly1|910293|Al_scaffold_0001_547 641 0.0
Ahg470621 jgi|Araly1|470621|fgenesh2_kg.1__575__AT1G06090.1 627 7e-179
> Ahg470654 jgi|Araly1|470654|fgenesh2_kg.1__608__AT1G06360.1
Length=984
Score = 1565 bits (847), Expect = 0.0
Identities = 940/985 (95%), Gaps = 6/985 (1%)
Strand=Plus/Plus
Query 1 ATACAAATCATAACTCAAAGAAAAACAACCCCTCAACGGTCGATGTGTGATCCCATTAGA 60
|||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATACAACTCATAACTCAAACAAAAACAAGTCCTCAACGGTCGATGTGTGATCCCATTAGA 60
Query 61 GAAGATGGCTCTAACAAAAGAGGCGCCGTGAGTAAGGAAAAAAGGCCGTATATTCATAGA 120
||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GAAGATGGCTCTAGCCAAAGAGGCGCCTTGAGTAAGGAAAAAAGGCCGTATATTCATAGA 120
Query 121 GAATGGTCGTGGGCCGATATAATACGAGCGTTAACCGTTATCAATGTGCACTTTTTGTGT 180
|||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 121 GAATGGTCGTGGGCTGATATAATAAGAGCGTTAACCGTTATGGTTGTGCACTTTTTGTGT 180
Query 181 CTCTTGGCACCATTTAACTACAAATGGGAAGCAT-TACGGTTCGGTTTCGTGCTCTACGC 239
||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 181 CTCTTGGCACCGTTTAACTACAAATGGGAAGC-TCTACGGTTCGGTTTTGTGCTCTACGC 239
Query 240 ATTGACTTCACTCAGCATCACATTCTCATACCATAGGAACTTGGCTCACCGGAGCTTTAA 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 ATTGACTTCACTCAGCATTACATTCTCATACCATAGGAACTTGGCTCACCGGAGCTTCAA 299
Query 300 GCTTCCGAAATGGCTTGAATATCCTTTAGCTTATTTTGCTGTTTTTGCTCTTCAGGGTGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCTTCCGAAATGGCTTGAATATCCTTTAGCTTATTTTGCTGTTTTTGCTCTTCAGGGTGA 359
Query 360 TCCGTTGGATTGGGTGAGCATACATAGGTTCCATCACCAGTTCACAGATTCTGACCGTGA 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TCCGTTGGATTGGGTGAGCATACATAGGTTCCATCACCAGTTCACTGATTCTGACCGTGA 419
Query 420 CCCACATAGCCCTATCGAAGGATTTTGGTTCAGTCATGTGTGGTGGATATGTGACACTCG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCCACATAGCCCTATCGAAGGATTTTGGTTCAGTCATGTGTGGTGGATATGTGACACTCG 479
Query 480 TTATATCAAATATAAGTGTGGAGGACGTAACAACGTGATGGACTTGAAGCAGCAATGGTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 TTATATCAAATATAAGTGTGGAGGACGTAACAACGTGATGGACTTGAAGCAACAATGGTT 539
Query 540 CTATTGGTTTCTACGAATGACAATTGGTTTCCACGTCTTAATGTTTTGGACTGTCCTCTA 599
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTACAGGTTTCTACGAATGACAATTGGTTTCCACGTCTTAATGTTTTGGACTGTCCTCTA 599
Query 600 TCTCTATGGTGGTTTACCTTACCTTACATGCGGCGGGGGCGTTGGAGGTGTGATTGGGTA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTCTATGGTGGTTTACCTTACCTTACATGCGGCGGGGGCGTTGGAGGTGTGATTGGGTA 659
Query 660 CCACGTGACATGGCTCGTGAACTCGGCATGCCATATTTGGGGTTCGAGATCATGGAAGAC 719
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 CCACGTGACATGGCTCGTAAACTCGGCATGCCATATTTGGGGTTCGAGGTCATGGAAGAC 719
Query 720 TAAAGACACATCTCGTAACGTTTGGTGGCTAAGCTTATTTACAATGGGAGAGAGTTGGCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TAAAGACACATCTCGTAACGTTTGGTGGCTAAGCTTATTTACAATGGGAGAGAGTTGGCA 779
Query 780 CAATAATCACCACGCCTTTGAGTCATCGGCGAGGCAAGGATTGGAGTGGTGGCAGATAGA 839
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 780 TAATAATCACCACGCGTTTGAGTCATCAGCGAGGCAAGGATTGGAGTGGTGGCAAATAGA 839
Query 840 CATAACTTGGTATCTTATTCGACTATTTGAGGTTCTCGGGTTAGCCACTGACGTGAAATT 899
|| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 840 TATCACTTGGTATCTCATTCGACTATTTGAGGTTCTCGGATTAGCCACTGATGTGAAATT 899
Query 900 GCCCTCGGAAATCCAGAAACAGAAACTGGCTCTGACTCGTTGAT----CATCTGCATGAG 955
|||||||||| | ||||||| |||| ||||||||| |||||||| ||||||||||||
Sbjct 900 GCCCTCGGAATTTCAGAAACGGAAATTGGCTCTGATTCGTTGATATATCATCTGCATGAG 959
Query 956 AGATTTATCAGAATTTTATATTTTT 980
||||||||||| |||||| | ||||
Sbjct 960 AGATTTATCAGTATTTTACAGTTTT 984
> Ahg470653 jgi|Araly1|470653|fgenesh2_kg.1__607__AT1G06350.1
Length=959
Score = 1038 bits (562), Expect = 0.0
Identities = 806/924 (87%), Gaps = 16/924 (2%)
Strand=Plus/Plus
Query 10 ATAACTCAAA-GAAAAACAACCCCTCAACGGT-CG--ATGTGTGATCCCATTAGAGAAGA 65
|||||||||| | || |||| |||||||||| || ||||||||||||| |||||| ||
Sbjct 3 ATAACTCAAACG-AATACAATTCCTCAACGGTCCGATATGTGTGATCCCACTAGAGACGA 61
Query 66 TGGCTCTAACAAAAG-AGGCGCCGTGAGTA-AGGAAAAAAGGCCGTATATTCATAGAGAA 123
|| ||| | | |||| | | || || |||| | ||||||||| ||||| |||| ||| ||
Sbjct 62 TGTCTCCAGCCAAAGCA-GAGCGGTCAGTATA-GAAAAAAGGGCGTATTTTCAGAGAAAA 119
Query 124 TGGTCGTGGGCCGATATAATACGAGCGTTAACCGTTATCAAT-GTGCACTTTTTGTGTCT 182
||| | | || |||| | ||| |||||||||||||| | || |||||||||||||||||
Sbjct 120 TGGCCCTTGGTCGATGTTATAAGAGCGTTAACCGTTGT-GATAGTGCACTTTTTGTGTCT 178
Query 183 CTTGGCACCATTTAACTACAAATGGGAAGCATTACGGTTCGGTTTCGTGCTCTACG-CAT 241
|||||| || |||||||| |||||||||| || ||||||||||| ||||||| || |
Sbjct 179 CTTGGCGCCGTTTAACTATGAATGGGAAGCTTTTCGGTTCGGTTTGGTGCTCTTCGTGA- 237
Query 242 TGACTTCACTCAGCATCACATTCTCATACCATAGGAACTTGGCTCACCGGAGCTTTAAGC 301
| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 238 TAACTACACTCAGCATCACCTTCTCATACCATAGGAACTTGTCTCACCGGAGCTTCAAGA 297
Query 302 TTCCGAAATGGCTTGAATATCCTTTAGCTTATTTTGCTGTTTTTGCTCTTCAGGGTGATC 361
| ||||||||| | ||||||||||| ||||||| ||||||||| ||||| ||||||||||
Sbjct 298 TCCCGAAATGGATCGAATATCCTTTTGCTTATTCTGCTGTTTTCGCTCTCCAGGGTGATC 357
Query 362 CGTTGGATTGGGTGAGCATACATAGGTTCCATCACCAGTTCACAGATTCTGACCGTGACC 421
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 CAATGGATTGGGTGAGCATACATAGGTTCCATCACCAGTTCACGGATTCTGACCGTGACC 417
Query 422 CACATAGCCCTATCGAAGGATTTTGGTTCAGTCATGTGTGGTGGATATGTGACACTCGTT 481
|||||||||||| |||||||| |||||||| ||| | | |||||||| |||||| | |
Sbjct 418 CACATAGCCCTAAAGAAGGATTATGGTTCAGCCATATATTGTGGATATTTGACACCCAAT 477
Query 482 ATATCAAATATAAGTGTGGAGGACGTAACAACGTGATGGACTTGAAGCAGCAATGGTTCT 541
| |||||||| ||||||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct 478 ACATCAAATACAAGTGTGGAGGACGTGACAACGTAATGGACTTGAAGAAGCAATGGTTCT 537
Query 542 ATTGGTTTCTACGAATGACAATTGGT-TTCCACGTCTTAATGTTTTGGACTGTCCTCTAT 600
|| ||||||||||| ||| |||| | || ||| || |||||||||||| |||||||||
Sbjct 538 ATAAGTTTCTACGAAGGACTATTGCTCTT-CACATCGCAATGTTTTGGACCGTCCTCTAT 596
Query 601 CTCTATGGTGGTTTACCTTACCTTACATGCGGCGGGGGCGTTGGAGGTGTGATTGGGTAC 660
||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 597 CTCTACGGTGGTTTACCTTACCTTACATGCGGCGGGGGTGTTGGAGGTGTGATAGGGTAT 656
Query 661 CACGTGACATGGCTCGTGAACTCGGCATGCCATATTTGGGGTTCGAGATCATGGAAGACT 720
|||||||| | ||||| |||||||||||||||||||||||||| || || |||||||||
Sbjct 657 CACGTGACCTTTCTCGTAAACTCGGCATGCCATATTTGGGGTTCAAGGTCGTGGAAGACT 716
Query 721 AAAGACACATCTCGTAACGTTTGGTGGCTAAGCTTATTTACAATGGGAGAGAGTTGGCAC 780
||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||
Sbjct 717 AAAGACACATCTCGTAACGTTTGGTGGTTAAGTTTGTTTACGATGGGAGAGAGTTGGCAC 776
Query 781 AATAATCACCACGCCTTTGAGTCATCGGCGAGGCAAGGATTGGAGTGGTGGCAGATAGAC 840
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 AACAACCACCACGCGTTTGAGTCATCGGCGAGGCAAGGATTGGAGTGGTGGCAGATAGAC 836
Query 841 ATAACTTGGTATCTTATTCGACTATTTGAGGTTCTCGGGTTAGCCACTGACGTGAAATTG 900
||||||||||| || |||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 837 ATAACTTGGTACCTCATTCGACTATTTGAAGTTCTTGGATTAGCCACTGATGTGAAATTA 896
Query 901 CCCTCGGAAATCCAGAAACAGAAA 924
|||||||| |||||||||| |||
Sbjct 897 CCCTCGGACTTCCAGAAACA-AAA 919
> Ahg910293 jgi|Araly1|910293|Al_scaffold_0001_547
Length=900
Score = 641 bits (347), Expect = 0.0
Identities = 626/757 (83%), Gaps = 33/757 (4%)
Strand=Plus/Plus
Query 163 AAT-GTGCACT-TTTTGTGTCTCTTGGCACCATTTAACTACAAATGGGAAGCATTACGGT 220
||| ||||| | | |||||||| ||||| || ||||||||||||||||||||||| ||||
Sbjct 120 AATCGTGCA-TCTGTTGTGTCTATTGGCTCCTTTTAACTACAAATGGGAAGCATTGCGGT 178
Query 221 TCGGTTTC-GTGCTCTACGCAT--TGACTTCA-CTCAGCATCACATTCTCATACCATAGG 276
|||| | | | || || ||| |||| | |||||||| |||||||| |||||||||
Sbjct 179 TCGG-TACAATTATC-AC-CATAGTGAC-AAACCTCAGCATTACATTCTCGTACCATAGG 234
Query 277 AACTTGGCTCACCGGAGCTTTA-AGCTTCCGAAATGGCTTGAATATCCTTTAGCTTATTT 335
|||||| ||||||||||||||| | || || ||||||||||||||||| || |||||||
Sbjct 235 AACTTGACTCACCGGAGCTTTACA-CTACCTAAATGGCTTGAATATCCATTCGCTTATTC 293
Query 336 TGCTGTTTTTGCTCTTCAGGGTGATCCGTTGGATTGGGTGAGCATACATAGGTTCCATCA 395
|||| ||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 294 TGCTCTTTTTGCACTTCAGGGTGATCCATTGGATTGGGTGAGCATTCATAGATTCCATCA 353
Query 396 CCAGTTCACAGATTCTGACCGTGACCCACATAGCCCTATCGAAGGATTTTGGTTCAGTCA 455
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 354 CCAGTTCACAGATTCTGACCGTGATCCACATAGCCCTATCGAAGGATTCTGGTTCAGTCA 413
Query 456 TGTGTGGTGGATATGTGACACTCGT-TATATCAAATATAAGTGTGGAGGACGTAACAACG 514
||| | |||||||| |||| | || ||||||| | | ||||| ||| ||||||||||||
Sbjct 414 TGTTTTGTGGATATTTGACTC-CGAATATATCAGAGAAAAGTGCGGAAGACGTAACAACG 472
Query 515 TGATGGACTTGAAGCAGCAATGGTTCTATTGGTTTCTACGAATGACAATTGGTT-TCCAC 573
|||||||||||||||| ||||||||||| |||||||| || |||| |||||| |||||
Sbjct 473 TGATGGACTTGAAGCAACAATGGTTCTACAGGTTTCTAAAAAAGACA-TTGGTTCTCCAC 531
Query 574 GTCTTAATGTTTTGGACTGTCCTCTATCTCTATGG--TGGTTTACCTTACCTTACATGCG 631
|||| | |||||||| || |||| || ||||| |||| |||||||||| || || |
Sbjct 532 ATCTTTGTATTTTGGACCCTCATCTA-CT-TATGGGGTGGTCTACCTTACCTAACTTG-G 588
Query 632 GCGGGGGCGTT--GGAGGTGTGATTGGGT-ACCACGTGACATGGCTCGTGAACTCGGCAT 688
| | || ||| ||||| | ||| | | |||||| ||| |||||||| ||||||||||
Sbjct 589 ACCGTGG-GTTCTGGAGGAGC-ATTCGCTTACCACGGGACTTGGCTCGTAAACTCGGCAT 646
Query 689 GCCATATTTGGGGTTCG-A-GATCATGGAAGACTAAAGACACATCTCGTAACGTTTGGTG 746
|||||||||| |||||| | | | ||| | || || ||||| |||||||||||||||||
Sbjct 647 GCCATATTTGTGGTTCGCAAG-TG-TGGCACACCAATGACACCTCTCGTAACGTTTGGTG 704
Query 747 GCTAA-GCTTATTTACAATGGGAGAGAGTTGGCACAATAATCACCACGCCTTTGAGTCAT 805
|||| ||| ||| || ||||||||||| |||||||| || ||||| ||||||||| | |
Sbjct 705 GCTAGCGCT-ATTGACTATGGGAGAGAGCTGGCACAACAACCACCATGCCTTTGAGGCGT 763
Query 806 CGGCGAGGCAAGGATTGGAGTGGTGGCAGATAGACATAACTTGGTATCTTATTCGACTAT 865
|||| ||||| ||| | || |||| ||| |||||||||||||||| || ||||| | |
Sbjct 764 CGGCTAGGCATGGACTAGAATGGTATCAGTTAGACATAACTTGGTACCTCATTCGGTTCT 823
Query 866 TTGAGGTTCTCGGGTTAGCCACTGACGTGAAATTGCC 902
|| ||| |||||| |||||||| | || ||||||||
Sbjct 824 TTCAGGCTCTCGGCTTAGCCACCAATGTCAAATTGCC 860
> Ahg470621 jgi|Araly1|470621|fgenesh2_kg.1__575__AT1G06090.1
Length=941
Score = 627 bits (339), Expect = 7e-179
Identities = 618/751 (82%), Gaps = 26/751 (3%)
Strand=Plus/Plus
Query 165 TGTGCACT-TTTTGTGTCTCTTGGCACCATTTAACTACAAATGGGAAGCATTACGGTTCG 223
|||||| | | |||||||| |||||||| ||||||| |||||||||||| || ||||| |
Sbjct 162 TGTGCA-TCTATTGTGTCTATTGGCACCGTTTAACTTCAAATGGGAAGCTTTTCGGTTTG 220
Query 224 GTTTCGTG-CTCTACGC-AT--TGACTTCACTCAGCATCACATTCTCATACCATAGGAAC 279
| | ||| ||| ||| || ||||| |||||||| ||||| |||||||||||||||
Sbjct 221 G--T-GTGATTCT-CGCTATAGTGACTAGTCTCAGCATTACATTTTCATACCATAGGAAC 276
Query 280 TTGGCTCACCGGAGCTTTAAGCTTCCGAAATGGCTTGAATATCCT-TTAGCTTATTTTGC 338
||| ||||||||||||||||||| || ||||||||||||||| || || ||||| |||
Sbjct 277 TTGACTCACCGGAGCTTTAAGCTCCCTAAATGGCTTGAATAT-CTATTCGCTTACACTGC 335
Query 339 TGTTTTTGCTCTTCAGGGTGATCCGTTGGATTGGGTGAGCATACATAGGTTCCATCACCA 398
|||| || ||||||||| ||||| | ||||||||||||| |||||||||||||||||
Sbjct 336 CCTTTTCGCGCTTCAGGGTCATCCGATAGATTGGGTGAGCACGCATAGGTTCCATCACCA 395
Query 399 GTTCACAGATTCTGACCGTGACCCACATAGCCCTATCGAAGGATTTTGGTTCAGTCATGT 458
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 396 GTTCACAGATTCAGACCGTGACCCACATAGTCCTATAGAAGGATTTTGGTTCAGTCACGT 455
Query 459 GTGGTGGATATGT-GACACTC-GTTATATCAAATATAAGTGTGGAGGACGTAACAACGTG 516
| |||||||| | ||||| | ||||||||| | | ||||||||||||||| ||||||||
Sbjct 456 CTTGTGGATAT-TCGACAC-CAGTTATATCAGAGAAAAGTGTGGAGGACGTGACAACGTG 513
Query 517 ATGGACTTGAAGCAGCAATGGTTCTATTGGTTTCTACGAATGACAATTGGTTTCCACGTC 576
|||||||||||| | |||||||||||| ||||||| |||| |||||||| ||||| ||
Sbjct 514 ATGGACTTGAAGAAACAATGGTTCTATAGGTTTCTTCGAAACACAATTGGCCTCCACATC 573
Query 577 TTAATG-TTTTGGACTGTCCTCTATCTCTATGG--TGGTTTACCTTACCTTACATGCGGC 633
||| | ||||||||| || ||||| | ||||| |||| |||||||||| || ||||||
Sbjct 574 TTA-TCATTTTGGACTCTCGTCTAT-T-TATGGGGTGGTCTACCTTACCTAACTTGCGGC 630
Query 634 GGGGGCGTTGGAGGTGTGATTGGGTACCACGTGACATGGCTCGTGAACTCGGCATGCCAT 693
| ||| || ||||| | || || ||| ||| ||| |||||| | ||||| |||||||||
Sbjct 631 GTGGGTGTGGGAGGAGCAATCGGTTACAACGGGACTTGGCTCATAAACTCAGCATGCCAT 690
Query 694 ATTTGGGGTTCG-AGATCATGGAAGACTAAAGACACATCTCGTAACGTTTGGTGGCTAAG 752
|||||||| || | | ||||||| || || ||||| ||||||||||||||||||||| |
Sbjct 691 ATTTGGGGCACGCA-AGCATGGAATACCAAGGACACTTCTCGTAACGTTTGGTGGCTAGG 749
Query 753 -CTTATTTACAATGGGAGAGAGTTGGCACAATAATCACCACGCCTTTGAGTCATCGGCGA 811
| ||| || ||||||||||| |||||||| || ||||| ||||||||| | ||||| |
Sbjct 750 GCC-ATTCACGATGGGAGAGAGCTGGCACAACAACCACCATGCCTTTGAGGCGTCGGCTA 808
Query 812 GGCAAGGATTGGAGTGGTGGCAGATAGACATAACTTGGTATCTTATTCGACTATTTGAGG 871
| || ||| |||| |||| ||| ||||| |||||||||| || ||| | | || |||
Sbjct 809 GACACGGACTGGAATGGTATCAGGTAGACTTAACTTGGTACCTCATTTGGTTCTTCCAGG 868
Query 872 TTCTCGGGTTAGCCACTGACGTGAAATTGCC 902
|||||| |||||||| || || ||||||||
Sbjct 869 CTCTCGGTTTAGCCACCGATGTCAAATTGCC 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5