BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06370.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893389 jgi|Araly1|893389|Al_scaffold_0006_1385 468 5e-131
Ahg919352 jgi|Araly1|919352|scaffold_100633.1 296 3e-79
> Ahg893389 jgi|Araly1|893389|Al_scaffold_0006_1385
Length=1629
Score = 468 bits (253), Expect = 5e-131
Identities = 485/591 (82%), Gaps = 40/591 (7%)
Strand=Plus/Plus
Query 729 TCTTAGCAGATATATACAGCATACTCTGCCATAAGTAATTCAGGTTTGTGCTGCCTGTGT 788
||||||| | ||||||||| ||||| |||| ||| ||||||||||||| |||||||||
Sbjct 974 TCTTAGC--A-ATATACAGCGTACTCGGCCACAAGGAATTCAGGTTTGTCCTGCCTGTGC 1030
Query 789 TACCCATAGCTTTGATATTCTCTGGGTATACATTTGCTCAAATGGAAGCATCTGATTTAT 848
| ||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||
Sbjct 1031 TGCCCATAGCTTTGATATTCTCTGGGTATGCATTTGCTCAAATGGAAGTATCTGGTTCAT 1090
Query 849 CATC-A-ATCA-T---TAAAGAGAAGCAAGTCCCTGGAAATAACCATATCATCAAGTGGT 902
|||| | |||| | |||| |||||||||||||| || | ||||||| | ||||||||
Sbjct 1091 CATCAACATCAGTCACTAAAAAGAAGCAAGTCCCTCGACAGAACCATA-C--CAAGTGGT 1147
Query 903 CTCCTAAACTAAGACTTCCAGTCTTCATTTTGCCTGCTACCAATATCCCGA-GGCACTAC 961
|||||||| |||||||| ||||||| |||||| ||||||||||||||| | |||||||
Sbjct 1148 CTCCTAAATTAAGACTTTCAGTCTTTTTTTTGCTTGCTACCAATATCCCAATGGCACTAT 1207
Query 962 ACATGAGTTTATTCTATCA-AGATG---CGATG-TAC-A-G----ACTTATCGGAAAAAA 1010
|||||||||||||| |||| ||| | ||| | | | | | ||||||||| | ||
Sbjct 1208 ACATGAGTTTATTCCATCAGAGAGGAACCGAGGATGCGATGAACTACTTATCGG-ATGAA 1266
Query 1011 GGATACAAAGGGAGAGTAAAGAGCATTCTCTCTCTCATGCCAAGCCATTCGACTCCTTAT 1070
| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| ||
Sbjct 1267 GCATACAAAGGGAGAGTAAAGAGCATTCTCTTTCTCATGCCCTGCCATTCTACTCCCTAC 1326
Query 1071 TATTATTATTCCACTCTCCATAGTAACATTCCAATGCGATTTCTCGACTACACACCAAGC 1130
|||| ||||||||||| ||||||||||||||| ||||||||||| ||| |||||
Sbjct 1327 TATT------CCACTCTCCATCGTAACATTCCAATGCAATTTCTCGACTGCACGCCAAGT 1380
Query 1131 GAAGACATTAGG-AGATTTTGATGAGTCAGACCAATTCTTAATGGACCTTTTAGGATTGG 1189
||||| | ||| | | |||||||||||||||| |||||| | ||| |||||| || |
Sbjct 1381 GAAGAGA--AGGGACAACTTGATGAGTCAGACCAGTTCTTAGTAAACCCTTTAGGTTTTG 1438
Query 1190 CATCAAAGTTAGCTAGAAATTGGCCAGCAC-GACCGCGTCACATAT-TATTGTTTGCATC 1247
||||| |||||||||| || ||| ||| | | || |||| || | |||||||||||||
Sbjct 1439 CATCAGAGTTAGCTAGCAACTGGTCAGTGCCG-CCTAGTCATAT-TGTATTGTTTGCATC 1496
Query 1248 GGAAGCAACAAAACTCAGAGGTTTTATGATCCA-CTATTCCTTCCAAGAGG 1297
|||| |||||||||||||| ||| |||||||| | ||||||| ||||||
Sbjct 1497 AGAAGAAACAAAACTCAGAGATTTCATGATCCAAC-ATTCCTTTAAAGAGG 1546
Score = 148 bits (80), Expect = 8e-35
Identities = 117/134 (87%), Gaps = 5/134 (4%)
Strand=Plus/Plus
Query 599 TCTTTGGTCCTCGGTTTCACCTGTCTGTTGGACCGTATGATATGCTGCTCATGGGTCATT 658
|||||||||||||||||||| ||| ||||||||||| |||| | | |||| |||||||||
Sbjct 733 TCTTTGGTCCTCGGTTTCACTTGTTTGTTGGACCGTCTGATGTACGGCTCGTGGGTCATT 792
Query 659 GTGCCTCTCAATTTTCTGAAGCTT-----CCTCTCATCCGGTGGAGACTATTACGGAACT 713
||||||||||||||||||||| || ||| ||||| |||||||||||||||||||||
Sbjct 793 GTGCCTCTCAATTTTCTGAAGTTTAATTTCCTTTCATCTGGTGGAGACTATTACGGAACT 852
Query 714 CGCTCATGGCACTG 727
| | ||||||||||
Sbjct 853 CACCCATGGCACTG 866
> Ahg919352 jgi|Araly1|919352|scaffold_100633.1
Length=287
Score = 296 bits (160), Expect = 3e-79
Identities = 234/268 (87%), Gaps = 11/268 (4%)
Strand=Plus/Plus
Query 1022 GAGAGTAAAGAGCATTCTCTCTCTCATGCCAAGCCATTCGACTCCTTATTATTATTATTC 1081
||||||| | ||||||||| |||||||||||||||||| ||||| |||||||||
Sbjct 29 GAGAGTAGTGCGCATTCTCTTTCTCATGCCAAGCCATTCTACTCC------TTATTATTC 82
Query 1082 CACTCTCCATAGTAACATTCCAATGCGATTTCTCGACTACACACCAAGCGAAGACATTAG 1141
|||||||||||||||||| ||||||| |||||||||||||| ||||| ||||| | ||
Sbjct 83 CACTCTCCATAGTAACATCCCAATGCAATTTCTCGACTACATGCCAAGTGAAGATA-AAG 141
Query 1142 GAGATTTTGATGAGTCAGACCAATTCTTAATGGACCTTTTAGGATTGGCATCAAAGTTAG 1201
|||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 142 GAGAATTTGATGAGTCAGACCAATTCTTAATGGACCTTATAGGATTTGCATCAAAGTTAG 201
Query 1202 CTAGAAATTGGCCAGCAC-GACCGCGTCACATAT-TATTGTTTGCATCGGAAGCAACAAA 1259
||||||| ||| |||||| | || ||||||| | ||||||||||||| |||||||||||
Sbjct 202 CTAGAAACTGGTCAGCACTG-CCTAGTCACAT-TGTATTGTTTGCATCAGAAGCAACAAA 259
Query 1260 ACTCAGAGGTTTTATGATCCACTATTCC 1287
|||| ||| |||||||||||| ||||||
Sbjct 260 ACTCTGAGATTTTATGATCCAATATTCC 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5