BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06380.1
Length=953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919353 jgi|Araly1|919353|scaffold_100634.1 1090 0.0
> Ahg919353 jgi|Araly1|919353|scaffold_100634.1
Length=784
Score = 1090 bits (590), Expect = 0.0
Identities = 718/776 (93%), Gaps = 23/776 (3%)
Strand=Plus/Plus
Query 12 TACTACTACGGCTGCACTTCCGCAGCGACACCAGTCGAAGGTTGACCCGCAGAACGTTAA 71
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 26 TACAACTACGGCTGCTCTTCCGCAGCGACACCAGTCGAAGGTTGACCCGAAGAACGTTAA 85
Query 72 CAGAGCCGTGAAGTCTCTGCTAAAATGGTGGGACTCCAAATCCAAGACCGAGAACTCTGA 131
||||||||||||||||||||| ||||||||||||||||||| || || |
Sbjct 86 CAGAGCCGTGAAGTCTCTGCTTAAATGGTGGGACTCCAAAT------CC---AA----G- 131
Query 132 ATCACTCGAGAACGACGGTTTCGTCTATCTAATCGTGACACTGAAGAGAATCCCTCAGTT 191
|| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 132 ---AC-CGAGAACGACGGTTTCGTCTATCTAACCGTGACACTGAAGAGAATCCCCCAGTT 187
Query 192 GGATCGTACTAACCCCTTGATGATCCCTCTTCCTCATCCTCTCATCGATCTGGTCGCCGA 251
|||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 188 GGATCGGACTAACCCTTTGATGATTCCTCTTCCTCATCCTCTCATCGATCTGGCCGCCGA 247
Query 252 AGATCCGCCGGAGCTCTGTTTGATCATCGACGACAAACACAAGAACAAAATCACAAAGGA 311
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 248 AGATTCACCGGAGCTCTGTTTGATTATCGACGACAAACACAAGAACAAAATCACAAAGGA 307
Query 312 AGCGGCTTTGAAGAAGATCGAAGCAGAGAAGATTCCAATCACCACAGTTATTAAAGTCTC 371
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 308 AGCGGCTTTGAAGAAGATCGAAGCAGAGAACATTCCAATCACCACAGTGATTAAGGTCTC 367
Query 372 CAAATTGAAATCCGATTTACGCAAATTAGAGGAGGAG-A-A-GCGATTCGAGTTGTATTT 428
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 368 CAAATTGAAATCCGATTTACGCAAATTAGAGGAGGAGGAGAAGCGATTCGAGTTGTATTT 427
Query 429 CGCGGAGAGGAGGCTAATGCCGATGTTGCCGAAGCTGTTGGGGAAAGAGTTTGTTAAGAA 488
||||||||||||| | |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 428 CGCGGAGAGGAGGTTGATGCCGATTTTGCCGAAGCTATTGGGGAAAGATTTTGTTAAGAA 487
Query 489 GAATAAGACTCCGATTGCGATTAACTTAAGGCATGGT-AGTTGGAAAGAGCAGATCGAAA 547
||| |||| |||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 488 GAAGAAGAATCCGATTGCGATTAACTTAAGGCACGGTGA-TTGGAAAGAGCAGATCGAAA 546
Query 548 AAGCTTGTGAATCAGCTTTGTTCTTCGTTGGTACAGGTACTTGCAGTGTTGTTAAAGTAG 607
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AAGCTTGTGAATCGGCTTTGTTCTTCGTTGGTACAGGTACTTGCAGTGTTGTTAAAGTAG 606
Query 608 CGAAGTTGTCAATGGGAAGGAACGAGATTGCAGAGAATGTTGTAGCGGCCATGAATGGGA 667
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 607 CGAAATTGTCAATGGGAAGGAAGGAGATTGCAGAGAATGTTGTAGCGGCCATGAATGGGA 666
Query 668 TTGGTGATTTAGTTCCTGGTAGATGGAAGAATGTTAAATTGTTTCATCTCAAGTTACTTG 727
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 667 TTGGTGAATCAGTTCCTGGTAAATGGAAGAATGTTAAATTGTTTCATCTCAAGTTGCTTG 726
Query 728 AGAGCTTGGCATTGCCTGTTTATCAATCAGTTGCTTGATGAATTTGTTTAAAGAAG 783
||||| ||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 727 AGAGCATGGCATTGCCTGTTTATCAATCAGTTGCTTGATCAAAATGTTTAAAGAAG 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35378066976
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5