BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06390.1
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470656 jgi|Araly1|470656|fgenesh2_kg.1__610__AT1G06390.1 2545 0.0
Ahg933625 jgi|Araly1|933625|scaffold_401613.1 1408 0.0
Ahg489503 jgi|Araly1|489503|fgenesh2_kg.6__2637__AT5G26751.1 353 2e-96
> Ahg470656 jgi|Araly1|470656|fgenesh2_kg.1__610__AT1G06390.1
Length=1604
Score = 2545 bits (1378), Expect = 0.0
Identities = 1535/1608 (95%), Gaps = 21/1608 (1%)
Strand=Plus/Plus
Query 34 ATTGTTCAGTGGTTGAGAGAGAAAAGAGTAAAAAAGCACATGGCCTCATTACCATTGGGG 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTGTTCAGTGGTTGAGAGAGAAAAGAGTAAAAAAGCACATGGCCTCATTACCATTGGGG 60
Query 94 CCTCAGCCTCATGCTCTTG------CTCCG-C-C-GCTGCAGCTTCACGACGGCGACGCT 144
|||| |||||||||||||| ||||| | | || ||||||||||||||||||||||
Sbjct 61 CCTCCGCCTCATGCTCTTGCTCCACCTCCGCCGCAGCCGCAGCTTCACGACGGCGACGCT 120
Query 145 TTGAAACGCCGTCCTGAATTGGATTCTGATAAGGAAATGTCTGCAGCTGTTATTGAGGGA 204
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TTGAAACGCCGTCCTGAAATGGATTCTGATAAGGAAATGTCTGCTGCTGTTATTGAGGGA 180
Query 205 AATGACGCTGTTACTGGTCATATCATTTCCACTACTATTGGAGGCAAAAACGGCGAACCA 264
||||| |||||||| |||||||||||||||||||| ||||| |||||||| || |||||
Sbjct 181 AATGATGCTGTTACCGGTCATATCATTTCCACTACCATTGGGGGCAAAAATGGTGAACCG 240
Query 265 AAGCAGACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGGATTGTT 324
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 AAGCAGACCATTAGTTACATGGCTGAGCGGGTTGTTGGAACAGGTTCATTCGGAATTGTT 300
Query 325 TTTCAGGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAAGAT 384
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCCAGGCGAAATGCTTGGAAACTGGAGAATCAGTAGCCATTAAAAAGGTCTTGCAAGAT 360
Query 385 CGACGCTATAAAAACCGTGAGTTGCAACTAATGCGACCAATGGATCACCCAAATGTCATC 444
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGACGCTACAAAAACCGTGAGTTGCAACTAATGCGACCAATGGATCACCCAAATGTCATC 420
Query 445 TCCTTGAAGCACTGTTTCTTCTCTACAACGAGTAGAGATGAGCTCTTCCTCAACCTTGTT 504
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 TCCTTGAAGCATTGTTTCTTCTCTACAACAAGTAGAGATGAGCTCTTCCTCAACCTTGTT 480
Query 505 ATGGAGTATGTACCTGAGACTTTATACCGGGTTTTGAGGCACTATACTAGTTCTAATCAG 564
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 481 ATGGAGTATGTACCTGAGACTTTGTACCGGGTTTTGAGGCACTATACTAGTTCAAATCAG 540
Query 565 AGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAATCTTTAGAGGTTTGGCTTAC 624
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGATGCCAATTTTCTATGTCAAACTTTACACATATCAAATCTTTAGAGGTTTGGCTTAC 600
Query 625 ATCCATACTGTTCCCGGTGTTTGCCACAGAGATGTGAAACCACAAAATCTCTTGGTTGAT 684
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 ATCCATACTGTTCCCGGTGTTTGCCACAGAGATGTGAAACCACAAAATCTGTTGGTTGAT 660
Query 685 CCCTTGACCCATCAGGTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTATTGGTCAAAGGT 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCCTTGACCCATCAGGTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTATTGGTCAAAGGT 720
Query 745 GAACCAAACATATCATATATCTGCTCCCGTTATTATCGTGCTCCAGAACTGATCTTTGGC 804
||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 721 GAAGCAAACATATCATATATCTGCTCCCGTTATTATCGAGCTCCAGAACTCATCTTTGGC 780
Query 805 GCCACAGAGTATACAGCATCCATAGATATATGGTCTGCTGGTTGTGTACTGGCAGAGCTT 864
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 781 GCCACAGAGTATACAGCATCCATAGATATATGGTCCGCTGGTTGTGTTCTGGCAGAGCTT 840
Query 865 CTTCTGGGCCAGCCGTTATTTCCAGGAGAAAATTCAGTTGATCAGCTTGTGGAGATCATA 924
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTCTTGGCCAGCCGTTATTTCCAGGAGAAAATTCAGTTGATCAGCTTGTGGAGATCATA 900
Query 925 AAGGTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCGAACTACACAGAT 984
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 901 AAGGTTCTTGGTACTCCAACTCGTGAAGAAATTCGATGTATGAACCCAAACTACACAGAC 960
Query 985 TTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAGGTTTTTCATAAACGGATGCCT 1044
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 961 TTTAGGTTCCCACAAATCAAAGCTCACCCTTGGTACAAGGTTTTTCATAAGCGGATGCCT 1020
Query 1045 CCAGAAGCAATAGACCTTGCATCTCGGCTTCTTCAATATTCACCAAGTCTACGCTGCACT 1104
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 CCAGAAGCCATTGACCTTGCATCTCGGCTTCTTCAATATTCACCAAGCCTACGCTGCACT 1080
Query 1105 GCGCTCGAAGCATGTGCTCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTT 1164
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCGCTCGAAGCATGTGCCCATCCGTTTTTCAATGAACTCCGAGAGCCAAACGCCCGTCTT 1140
Query 1165 CCAAATGGTCGTCCATTACCGCCATTGTTCAATTTCAAACAAGAGTTAGGTGGAGCTTCA 1224
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1141 CCAAATGGTCGTCCATTACCGCCACTGTTCAATTTCAAACAAGAGTTAGGTGGAGCTTCA 1200
Query 1225 ATGGAGCTAATCAACAGGCTAATACCTGAGCATGTGAGACGACAAATGAGCACAGGATTA 1284
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1201 GTGGAGCTAATAAACAGGCTAATACCTGAGCATGTGAGACGACAGATGAGCACAGGATTA 1260
Query 1285 CAAAACAGTTAAAAACTGTGCATGTCTGAAGAGAAAGAGGAGAAAAGCAGGTTTACTACT 1344
|||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 1261 CAAAACAGTTAAAAACTGTGCATGTCTGAAGAAAAAGAGGAGAAA-GCAGATTTACTACT 1319
Query 1345 TTTATTTGATAGTTGACAGGTTCAACAGTATATTAACCACGACTATTATCAGCTTCTATA 1404
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1320 TCTATTTGATAGTTGACAGGTTCAACAATATATTAACCACGACTATTATCAGCTTCTATA 1379
Query 1405 CCCGTAGTAAAGTCATATTCAGCTTTTTGAGAAATCAGATGCTGATAATTGCGtttt-tt 1463
|||||||||||||||| |||||||||| |||||||||||||||||||||||| || | ||
Sbjct 1380 CCCGTAGTAAAGTCATTTTCAGCTTTT-GAGAAATCAGATGCTGATAATTGC-TTCTATT 1437
Query 1464 ttttttttATTCCGTAGCCTGGAGAGTGGAGAGAGA--CACTGTTCCTCGTGTATTTT-T 1520
||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1438 TTTTTTTTATTCCTTAGCTTGGAGAGTGGAGAGAGAGACACTGTTCCTCGTGTATTTTCT 1497
Query 1521 GTATATGTTTTTGTCTGTAAAACAATTCTGACAGATACGTAGAGACAA-AAGAAAAA--C 1577
||||||||||||||| |||||||||||||||||||| |||||||| || || ||||| |
Sbjct 1498 GTATATGTTTTTGTCCGTAAAACAATTCTGACAGATCCGTAGAGAAAAGAAAAAAAAAAC 1557
Query 1578 GAGGTGATAATATTAAACCATGTCATGTCCAAAAGATTAG-CTACAGA 1624
|||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 1558 GAGGTGATAATATTGAACCATGTCATGTCCAAAAG-TTAATCTACAGA 1604
> Ahg933625 jgi|Araly1|933625|scaffold_401613.1
Length=1279
Score = 1408 bits (762), Expect = 0.0
Identities = 1072/1222 (88%), Gaps = 20/1222 (2%)
Strand=Plus/Plus
Query 65 AAAAGCACATGGCCTCATTACCATTGGGG---CCTCAGCC-TCATGCTCTT-GCT-C-C- 116
||||||||||| | ||| ||||||||||| |||||||| | | || || ||| | |
Sbjct 13 AAAAGCACATGACTTCAATACCATTGGGGCATCCTCAGCCGCCGT-CT-TTAGCTCCTCA 70
Query 117 GCCGCTGCAGCTTCACGACGGCGACGCTTTGAAACGCCGTCCTGAAT-TGGATTCTGATA 175
||||| ||| ||||||| ||| || ||||||||||| ||||| | || ||||||| || |
Sbjct 71 GCCGCCGCATCTTCACGGCGGAGATGCTTTGAAACGTCGTCCCG-ATATGGATTCAGACA 129
Query 176 AGGAAATGTCTGCAGCTGTTATTGAGGGAAATGACGCTGTTACTGGTCATATCATTTCCA 235
||||||||||| | |||||||| || |||||||| |||||||| |||||||||||||| |
Sbjct 130 AGGAAATGTCTTCTGCTGTTATAGAAGGAAATGATGCTGTTACCGGTCATATCATTTCTA 189
Query 236 CTACTATTGGAGGCAAAAACGGCGAACC-AAAGCAGACCATTAGTTACATGGCTGAGCGG 294
|||| ||||| |||||||| || ||||| ||| ||||| |||||||||||||| || |||
Sbjct 190 CTACAATTGGTGGCAAAAATGGTGAACCTAAA-CAGACTATTAGTTACATGGCCGAACGG 248
Query 295 GTTGTTGGAACAGGTTCATTCGGGATTGTTTTTCAGGCGAAATGCTTGGAAACTGGAGAA 354
|||||||||||||| |||||||| ||||| || ||||| |||||||||||||||||||||
Sbjct 249 GTTGTTGGAACAGGATCATTCGGAATTGTATTCCAGGCAAAATGCTTGGAAACTGGAGAA 308
Query 355 TCAGTAGCCATTAAAAAGGTCTTGCAAGATCGACGCTATAAAAACCGTGAGTTGCAACTA 414
|||||||||||||| ||||| ||||||||||| |||||||||||||| ||||| ||| ||
Sbjct 309 TCAGTAGCCATTAAGAAGGTTTTGCAAGATCGCCGCTATAAAAACCGAGAGTTACAATTA 368
Query 415 ATGCGACCAATGGATCACCCAAATGTCATCTCCTTGAAGCACTGTTTCTTCTCTACAACG 474
||||||| |||||| ||||||||||| | ||||||||||| |||||||||||||||||
Sbjct 369 ATGCGACTAATGGACCACCCAAATGTGGTTTCCTTGAAGCATTGTTTCTTCTCTACAACC 428
Query 475 AGTAGAGATGAGCTCTTCCTCAACCTTGTTATGGAGTATGTACCTGAGACTTTATACCGG 534
| ||||||||||||||||||||| || ||||||||||||||||| ||||| | ||||||
Sbjct 429 ACTAGAGATGAGCTCTTCCTCAATCTGGTTATGGAGTATGTACCAGAGACGCTGTACCGG 488
Query 535 GTTTTGAGGCACTATACTAGTTCTAATCAGAGGATGCCAATTTTCTATGTCAAGCTTTAC 594
||||||| |||||||||| |||| || ||| ||||||| |||||||||||||| ||||||
Sbjct 489 GTTTTGAAGCACTATACTGGTTCAAACCAGCGGATGCCTATTTTCTATGTCAAACTTTAC 548
Query 595 ACATATCAAATCTTTAGAGGTTTGGCTTACATCCATACTGTTCCCGGTGTTTGCCACAGA 654
||||| |||||||| ||||| |||||||| |||||||||| ||| ||||| |||||||||
Sbjct 549 ACATACCAAATCTTCAGAGGCTTGGCTTATATCCATACTGCTCCTGGTGTCTGCCACAGA 608
Query 655 GATGTGAAACCACAAAATCTCTTGGTTGATCCCTTGACCCATCAG-GTTAAGCTGTGTGA 713
||||||||||| |||||||| |||||||||||| | ||||||||| || ||||| |||||
Sbjct 609 GATGTGAAACCTCAAAATCTTTTGGTTGATCCCCTCACCCATCAGTGT-AAGCTCTGTGA 667
Query 714 TTTTGGAAGTGCAAAAGTATTGGTCAAAGGTGAACCAAACATATCATATATCTGCTCCCG 773
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||
Sbjct 668 TTTTGGAAGTGCAAAAGTATTGGTGAAAGGTGAAGCAAACATATCATATATCTGTTCTCG 727
Query 774 TTATTATCGTGCTCCAGAACTGATCTTTGGCGCCACAGAGTATACAGCATCCATAGATAT 833
||||| || ||||||||||| |||||||| || |||||||||||| ||||||| |||||
Sbjct 728 GTATTACCGAGCTCCAGAACTCATCTTTGGGGCTACAGAGTATACATCATCCATTGATAT 787
Query 834 ATGGTCTGCTGGTTGTGTACTGGCAGAGCTTCTTCTGGGCCAGCCGTTATTTCCAGGAGA 893
|||||||||||||||||| ||||||||||| || || |||||||||||||| || |||||
Sbjct 788 ATGGTCTGCTGGTTGTGTTCTGGCAGAGCTCCTACTTGGCCAGCCGTTATTCCCCGGAGA 847
Query 894 AAATTCAGTTGATCAGCTTGTGGAGATCATAAAGGTTCTTGGTACTCCAACTCGTGAAGA 953
|| || || |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 848 GAACTCTGTGGATCAGCTAGTGGAGATCATAAAGGTTCTTGGTACTCCAACTCGAGAAGA 907
Query 954 AATTCGATGTATGAACCCGAACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCC 1013
||||||||| |||||||| |||||||| || || || |||||||||||||||||||||||
Sbjct 908 AATTCGATGCATGAACCCAAACTACACCGACTTCAGATTCCCACAAATCAAAGCTCACCC 967
Query 1014 TTGGCACAAGGTTTTTCATAAACGGATGCCTCCAGAAGCAATAGACCTTGCATCTCGGCT 1073
|||||| |||||||| || || ||||||||||||||||| || ||||| |||||||| ||
Sbjct 968 TTGGCATAAGGTTTTCCACAAGCGGATGCCTCCAGAAGCCATTGACCTCGCATCTCGACT 1027
Query 1074 TCTTCAATATTCACCAAGTCTACGCTGCACTGCGCTCGAAGCATGTGCTCATCCGTTTTT 1133
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1028 TCTTCAATACTCACCAAGTCTACGTTGCACTGCGCTCGAAGCATGTGCACATCCGTTTTT 1087
Query 1134 CAATGAACTCCGAGAGCCAAACGCCCGTCTTCCAAATGGTCGTCCAT-TACCGCCATTGT 1192
|||||||||||| |||||||| || |||||||||||||| || || | |||| || ||||
Sbjct 1088 CAATGAACTCCGTGAGCCAAATGCTCGTCTTCCAAATGGCCGACC-TCTACCACCGTTGT 1146
Query 1193 TCAATTTCAAACAAGAGTTAGG-TGGAGCTTCAATGGAGCTAATCAACAGGCTAATACCT 1251
|||| |||||||||||||| | ||| || ||| |||||| |||||||||||||||||
Sbjct 1147 TCAACTTCAAACAAGAGTT-GTCTGGGGCGTCACCGGAGCTTATCAACAGGCTAATACCA 1205
Query 1252 GAGCATGTGAGACGACAAATGA 1273
||||||||||| ||||| ||||
Sbjct 1206 GAGCATGTGAGGCGACAGATGA 1227
> Ahg489503 jgi|Araly1|489503|fgenesh2_kg.6__2637__AT5G26751.1
Length=1523
Score = 353 bits (191), Expect = 2e-96
Identities = 755/1020 (74%), Gaps = 68/1020 (7%)
Strand=Plus/Plus
Query 217 ACTGGTCATATCAT-TTCCACTACTATTGGAGGCAA-AAACGGCGAACCAAAGCAGACCA 274
||||| |||||||| | ||||||||||| || || ||| ||| ||||||| ||||| |
Sbjct 273 ACTGGACATATCATAGT-GACTACTATTGGTGG-AAGAAATGGCCAACCAAAACAGACAA 330
Query 275 TTAGTTACATGGCTGAGCGGGTTGTTGGAACA-GGTTCATTCGG-GATTGTTTTTCAGGC 332
|||| ||||||||||| || |||||||| ||| || || || || | |||| || || ||
Sbjct 331 TTAGCTACATGGCTGAACGTGTTGTTGG-ACATGGATCTTTTGGTG-TTGTGTTCCAAGC 388
Query 333 GAAATG-CTTGGAAACTGGAGAATCAGTAGCCATTAAA-AAGGTCTTGCAAGAT-CGACG 389
|| ||| ||| || || |||||| | || || | |||| || || || |||||| || |
Sbjct 389 GAGATGTCTT-GAGACGGGAGAAACTGTTGCGA-TAAAGAAAGTTTTACAAGATAGGA-G 445
Query 390 CTATAAAAACCGTGAG-TTGC-AACTAATGCGACCAATGGATCACCCAAATGTCATCTCC 447
|| || || |||||| || | ||| ||| | | | | || || || ||||| | ||
Sbjct 446 GTACAAGAATCGTGAGCTT-CAAAC-CATGAGGCTACTTGACCATCCTAATGTTGTGTCT 503
Query 448 TTGAAGCACTGTTTCTTCTCTACAAC-GAGTAGAGATGAGCTCTT-CCTCAACCTTGTTA 505
||||| ||||| ||||| || || || || | ||||||||| || |||||| ||||||
Sbjct 504 TTGAAACACTGCTTCTTTTCAACCACTGA-AAAAGATGAGCT-TTACCTCAATCTTGTTC 561
Query 506 TGGAGTATGTACCTGAGACTTTATACCGGGTTTTGAGGCACTAT-ACTAGTTCT-AATCA 563
| || || || || || ||| | | || ||| | | |||||| || | || || ||
Sbjct 562 TTGAATACGTCCCAGAAACTGTGCATCGTGTTATCAAACACTATAAC-A-AACTGAACCA 619
Query 564 GAGGATGCCAATTTTCTATGTCAAGCTTTACACATATCAAATCTTTAGAGG-TTTGGCTT 622
||| ||||| | | || |||||||| ||||| ||||| || ||||| || || |||
Sbjct 620 GAGAATGCCTCTCATATACGTCAAGCTATACACTTATCAGATTTTTAG-GGCCTTATCTT 678
Query 623 ACA-TC-CATACTGTTCCCGGTGTTTGCCACAGAGATGTGAAA-CCACAAAATC-TCTTG 678
||| || | | || | ||||| || ||| | || | ||| || ||||| | | |||
Sbjct 679 ACATTCACCGA-TG-TATTGGTGTGTGTCACCGTGACAT-AAAGCCTCAAAA-CTTGTTG 734
Query 679 GTTGATCC-CTTGACCCATCAGGTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTATTGGT 737
|| |||| | || ||||| || || || |||||||||||||||||||||||||||||
Sbjct 735 GTAAATCCGC-ACACTCATCAAGTAAAACTATGTGATTTTGGAAGTGCAAAAGTATTGGT 793
Query 738 CAAAGGTGAACCAAACATATCATATATCTGCTCCCGTTATTATC-GTGCTCCAGAACTGA 796
||||| ||||||||||| || || |||||||| | ||||| | | || || ||||| |
Sbjct 794 AAAAGGAGAACCAAACATCTCCTACATCTGCTCGAGGTATTA-CAGAGCACCTGAACTTA 852
Query 797 TCTTTGGCGCCACAGAGTATACAGCATCCATAGATATATGGTCTGCTGGTTGTGTACTGG 856
| ||||| || || ||||||||| || |||| ||| | |||||||| || ||||| || |
Sbjct 853 TTTTTGGAGCAACTGAGTATACAACAGCCATTGATGTCTGGTCTGCGGGATGTGTTCTAG 912
Query 857 CAGAGCTTCTT-CTGGGCCAGCCGTTATTTCCAGGAGAAAATTCAGTTGATCAGCTTGTG 915
| || || || || || ||||| || || || || || | |||||||| |||||
Sbjct 913 CTGAACTA-TTACTTGGACAGCCTTTGTTCCCTGGTGAGAGCGGTGTTGATCAACTTGTA 971
Query 916 GAGATCATAAAGGTTCTTGGTA-CTCCAACTCGTGAAGAAATTCGA-TGTATGAACCCGA 973
||||| || ||||| ||||| | | || ||| | |||||||| | | ||||||||||| |
Sbjct 972 GAGATTATCAAGGT-CTTGGGAACGCCTACTAGGGAAGAAAT-CAAGTGTATGAACCCTA 1029
Query 974 ACTACACAGATTTTAGGTTCCCACAAATCAAAGCTCACCCTTGGCACAAGGTTTTTCATA 1033
|||||||||| || | ||||| || || |||||||| || ||||||||| |||| || |
Sbjct 1030 ACTACACAGAATTCAAATTCCCTCAGATTAAAGCTCATCCATGGCACAAGATTTTCCACA 1089
Query 1034 AACGGATGCCTCCAGAAGCAATAGACCTTGCATCTCG-G-CTTCTTCAATATTCACC-AA 1090
|||| |||||||||||||| | || ||| |||| | ||||||||||| || || ||
Sbjct 1090 AACGCATGCCTCCAGAAGCTGTTGAT-TTGG-TCTCAAGACTTCTTCAATACTCTCCTAA 1147
Query 1091 GTCTACGC--TGCACTGCGCTCGA-AGCATGTGCTC-ATCCGTT-TTTCAATGAACTCCG 1145
|||||| ||| | || ||||| | ||| || || | || || ||| | ||| || |
Sbjct 1148 -TCTACGAAGTGC-C-GCTCTCGACA-CAT-TGGTCCACCCATTCTTTGA-TGAGCTAAG 1201
Query 1146 AGAGCCAAACGCCCGTCTTCCAAATGGTCGT--CCATTACCGCCA-TTGTTCAATTTCAA 1202
||| |||||||| ||||| || ||||| ||| || || || ||| || ||||| |||||
Sbjct 1202 AGACCCAAACGCACGTCTACCTAATGGACGTTTCC-TT-CCACCACTT-TTCAACTTCAA 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61249113960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5