BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06400.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919355 jgi|Araly1|919355|scaffold_100636.1 1072 0.0
Ahg478935 jgi|Araly1|478935|fgenesh2_kg.3__1636__AT3G15060.1 270 1e-71
Ahg933714 jgi|Araly1|933714|scaffold_401702.1 110 3e-23
Ahg484985 jgi|Araly1|484985|fgenesh2_kg.5__977__AT3G46060.1 54.7 1e-06
> Ahg919355 jgi|Araly1|919355|scaffold_100636.1
Length=700
Score = 1072 bits (580), Expect = 0.0
Identities = 661/701 (94%), Gaps = 2/701 (0%)
Strand=Plus/Plus
Query 80 AAAATTCGATCTCTCATCTGATGGCTGGTTACAGAGCCGATGAAGAGTACGATTACCTCT 139
|||||| |||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 2 AAAATTGGATCTCTC-TGTGATGGCTAGTTACAGAGCCGATGAAGAGTACGATTACCTCT 60
Query 140 TCAAGCTCGTGTTGATCGGCGACTCTGGTGTCGGCAAATCGAATCTGCTCTCTCGGTTCA 199
||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 61 TCAAGCTGGTGTTGATCGGCGACTCTGGTGTCGGCAAATCGAATCTGCTGTCTAGGTTCA 120
Query 200 CCAAGAACGAGTTCAATCTCGAATCCAAGTCTACTATTGGTGTTGAGTTCGCTACCAAAA 259
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 CCAAGAACGAGTTCAATCTCGAATCCAAGTCTACGATTGGTGTTGAGTTCGCTACCAAAA 180
Query 260 CCACTAAAGTCGAAGGCAAAGTCGTCAAAGCTCAGATTTGGGATACTGCTGGTCAAGAGA 319
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 CTACTAAAGTCGAAGGCAAAGTCGTCAAAGCCCAGATTTGGGATACTGCTGGTCAAGAGA 240
Query 320 GATACCGAGCAATCACAAGCGCTTATTACAGAGGAGCTGTTGGTGCTTTGCTTATTTACG 379
||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
Sbjct 241 GATACCGAGCAATCACAAGCGCTTACTACAGAGGAGCCGTAGGTGCTTTGCTTATTTATG 300
Query 380 ACGTGACAAGGCACGCAACATTTGAGAATGCAGCAAGATGGCTAAGGGAACTAAGAGGAC 439
|||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 301 ACGTAACAAGGCACGCGACATTTGAGAATGCCGCAAGATGGTTAAGGGAACTAAGAGGAC 360
Query 440 ACACAGACCCAAACATAGTGGTGATGCTTATAGGGAACAAGTGCGATCTGCGTCACTTGG 499
||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||| |
Sbjct 361 ACACAGACCCAAACATAGTGGTGATGCTTATAGGGAACAAGAGCGATTTGCGCCACTTAG 420
Query 500 TGGCAGTCAAAACAGAAGAGGCTAAAGCCTTTGCTGAGAGAGAATCCCTCTATTTCATGG 559
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 421 TGGCAGTCAAAACAGAAGAGGCTAAAGCCTTTGCTGAGAGAGAATCTCTTTATTTCATGG 480
Query 560 AGACTTCAGCTCTAGACGCAACCAATGTTGAAAACGCATTCACGGAAGTGCTCACTCAGA 619
|||| |||||||| ||||||||||||||||||| ||||||||| ||||| ||| ||||||
Sbjct 481 AGACATCAGCTCTTGACGCAACCAATGTTGAAAGCGCATTCACAGAAGTACTCTCTCAGA 540
Query 620 TCCACAAGATAGTGAGCAAAAGAAGTGTTGATGGAGGAGGAGAGTCGGCTGATTTACCGG 679
|||||||| ||||||||||||||||||| |||||||| ||||| ||| | || ||||| |
Sbjct 541 TCCACAAGGTAGTGAGCAAAAGAAGTGTGGATGGAGGTGGAGATTCGACAGAATTACCAG 600
Query 680 GAAAAGGAGAGACGATAAACGTTAAAGAAGACGGATCGGTTCTTAAGAGAATGGGTTGCT 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAAAGGAGAGACGATAAACGTTAAAGAAGACGGATCGGTTCTTAAGAGAATGGGTTGCT 660
Query 740 GCTCTAACTAGAGTGGGGGGATTGTAGATTTGGCTTGATTT 780
||||||||||||||||||| ||||||||||||| |||||||
Sbjct 661 GCTCTAACTAGAGTGGGGG-ATTGTAGATTTGGTTTGATTT 700
> Ahg478935 jgi|Araly1|478935|fgenesh2_kg.3__1636__AT3G15060.1
Length=862
Score = 270 bits (146), Expect = 1e-71
Identities = 392/510 (77%), Gaps = 20/510 (4%)
Strand=Plus/Plus
Query 112 AGAGCCGATGAAGAGTACGATTACCTCTTCAAGCTCGTGTTGATCGGCGACTCTGGTGTC 171
||||| || || || ||||||| ||||| |||| | || || ||||| || || || |||
Sbjct 93 AGAGCTGACGATGATTACGATTTCCTCTACAAGGTGGTATTAATCGGTGATTCCGGCGTC 152
Query 172 GGCAAATCGAATCTGCTCTCTCGGTTCACCAAG-AACGAGTTCAATCTCGAATCCAAGTC 230
|| ||||| |||||||| ||||| |||| | | |||||||||| ||||| || || ||
Sbjct 153 GGTAAATCCAATCTGCTTTCTCGATTCA-CGCGCAACGAGTTCAGCCTCGAGTCTAAATC 211
Query 231 TACTATTGGTGTTGAGTTCGCTACCAAAACCACTAAAGTCGAAGGCAAAGTCGTCAAAGC 290
|| || || || || ||||| ||| || || | | ||||| | ||| ||||||| ||
Sbjct 212 CACCATCGGCGTCGAATTCGCCACCCGAAGCATTCATGTCGATGAAAAAATCGTCAAGGC 271
Query 291 TCAGATTTGGGATACTGCTGGTCAAGAGAGATACCGAGCAATCACAAGCGCTTATTA-CA 349
|||||||||||| || || ||||||||||||||||||||||||||||||||||| || |
Sbjct 272 TCAGATTTGGGACACCGCCGGTCAAGAGAGATACCGAGCAATCACAAGCGCTTACTATC- 330
Query 350 GAGGAGCTGTTGGTGCTTTGCTTATTTACGACGTGACAAGGCACGCAACATTTGAGAATG 409
|||||||||| || ||||||||| |||| || || || |||| | ||||||||||| |
Sbjct 331 GAGGAGCTGTAGGAGCTTTGCTTGTTTATGATGTTACTCGGCATGTGACATTTGAGAACG 390
Query 410 CAGCA-AGATGGCT-AAGGGAACTAAGAGGA-CACACAGAC-CCAAACATAGTGGTGATG 465
| | |||||| | |||| | || |||| | |||||||| |||| ||| ||| | |||
Sbjct 391 TTG-AGAGATGGTTGAAGG-AGCTCAGAG-ATCACACAGAGGCCAA-CATTGTGATCATG 446
Query 466 CTTATAGGGAACAAGTGCG-ATCTGCGTCACTTG-GTGGCAGTCAAAACAGAAGAGGCTA 523
||| | ||||| ||| ||| |||| |||||| | | | | || ||| ||||| ||||
Sbjct 447 CTTGTTGGGAATAAG-GCGGATCTACGTCACCTAAGAG-CTGTTTCAACCGAAGATGCTA 504
Query 524 AAGCCTTTGCTGAGAGAGA-ATCCC-TCTATTTCATGGAGACTTCAGCTCTAGACGCAAC 581
|||||||||| |||||||| | | | | | || ||||||||| || || || || |||
Sbjct 505 AAGCCTTTGCAGAGAGAGAGAACACAT-TCTT-CATGGAGACATCTGCACTCGAAGCATT 562
Query 582 CAATGTTGAAAACGCATTCACGGAAGTGCT 611
|| ||||| || || ||||| ||||||||
Sbjct 563 GAACGTTGAGAATGCTTTCACTGAAGTGCT 592
> Ahg933714 jgi|Araly1|933714|scaffold_401702.1
Length=705
Score = 110 bits (59), Expect = 3e-23
Identities = 146/186 (78%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 136 CTCTTCAAGCTCGTGTTGATCGGCGACTCTGGTGTCGGCAAATCGAATCTGCTCTCTCGG 195
||||||||| | ||| | ||||||||||||| ||||| |||||||| || ||||||| |
Sbjct 59 CTCTTCAAGATAGTGATCATCGGCGACTCTGCCGTCGGGAAATCGAACCTTCTCTCTC-G 117
Query 196 TTCAC-CAAG-AACGAGTTCAA-TCTCGAATCC-AAGTCTACTATTGGTGTTGAGTTCGC 251
| || | | ||||||||||| ||| | ||| ||| | || || || || |||||| |
Sbjct 118 CT-ACGCTCGTAACGAGTTCAACGCTC-ATTCCAAAG-CCACGATCGGCGTCGAGTTC-C 173
Query 252 -TAC-CAAAACCACTAAAG-TCGAAGGCAAAGTCGTCAAAGCTCAGATTTGGGATACTGC 308
|| ||||| || | || ||||||| |||| || |||||||||||||||||||||||
Sbjct 174 AAACGCAAAA-CA-TGGAGATCGAAGGAAAAGAGGTTAAAGCTCAGATTTGGGATACTGC 231
Query 309 TGGTCA 314
||||||
Sbjct 232 TGGTCA 237
> Ahg484985 jgi|Araly1|484985|fgenesh2_kg.5__977__AT3G46060.1
Length=1102
Score = 54.7 bits (29), Expect = 1e-06
Identities = 32/33 (97%), Gaps = 1/33 (3%)
Strand=Plus/Plus
Query 287 AAGC-TCAGATTTGGGATACTGCTGGTCAAGAG 318
|||| ||||||||||||||||||||||||||||
Sbjct 400 AAGCTTCAGATTTGGGATACTGCTGGTCAAGAG 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5