BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06420.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470661 jgi|Araly1|470661|fgenesh2_kg.1__615__AT1G06420.1 403 1e-111
> Ahg470661 jgi|Araly1|470661|fgenesh2_kg.1__615__AT1G06420.1
Length=578
Score = 403 bits (218), Expect = 1e-111
Identities = 296/333 (89%), Gaps = 7/333 (2%)
Strand=Plus/Plus
Query 372 GCGTTAAGAAAGAGGAAATTAAGGTTTCTGGAA---TTGTGAGCAACAAGGACGAAGATG 428
|||||||||||||||||||| |||| |||| || |||||||||||||||| || | ||
Sbjct 248 GCGTTAAGAAAGAGGAAATTGAGGTCTCTGCAATTGTTGTGAGCAACAAGGATGACGTTG 307
Query 429 GTGTAGATTCGAGGGAGAAAAAGAAGAAGAATCCGGTGAAAGAGAACACTAGGAGGGTTT 488
| | |||| |||||||||||||||||||| || | |||||||||||| ||||||| | ||
Sbjct 308 GAGGAGATACGAGGGAGAAAAAGAAGAAGTATACTGTGAAAGAGAACGCTAGGAGAGCTT 367
Query 489 TCAAGTCCAAAGGAGAGAATGCTGCTAAGGAAGTAACTCAATGCTGGATCAAGAAGAAAG 548
|||||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 368 TCAAGTACAAGGGAGAGAATGCTGCTAAGGAAGGAACTCATTGCTGGATCAAGAAGAAAG 427
Query 549 TAGAAGAGGAAAGAGAGACAAGTGAGGTCAAGGGAAC-TGCCAGATTGATTAGCAAACAA 607
||||||||||| ||||||||||||||||||||| ||| ||| ||||| | || ||| |||
Sbjct 428 TAGAAGAGGAAGGAGAGACAAGTGAGGTCAAGG-AACCTGCGAGATTAAATACCAAGCAA 486
Query 608 GGTTATTACCAAAAC-AAGAGACATGATTGGTCGTCTACACGTGTTATTAGGGCAACAAC 666
| |||| |||||||| || |||||||||| |||||||||||||||||| |||||||||||
Sbjct 487 GATTATCACCAAAACCAA-AGACATGATTTGTCGTCTACACGTGTTATGAGGGCAACAAC 545
Query 667 AAGTACTATGGTTTGGGTGAAGAAGGGTAAGAA 699
|||||||||||| ||||||||||||||||||||
Sbjct 546 AAGTACTATGGTGTGGGTGAAGAAGGGTAAGAA 578
Score = 370 bits (200), Expect = 1e-101
Identities = 233/248 (94%), Gaps = 6/248 (2%)
Strand=Plus/Plus
Query 65 ATGGAGGATCATGAGAAGATTGATGGg-a-a-gaagaagaagaagaagaGTGTGGCTTTG 121
||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |
Sbjct 1 ATGGAGGATCATGAGAAGATTGATGGGAAGATGAAGAAGAAGAAGAAGAGTGTGGCTTCG 60
Query 122 ATTCCGGCTAACTACGTCTCCATTCTTCAGCTTCAGGAACGTTGGCTGAAGGAGAAAGAG 181
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 ATTCCGGCTAACTACGTCTCCATTCTTCAGCTTCAGCAACGTTGGCTGAAGGAGAAAGAG 120
Query 182 AAGAAACAAAAGGAAAAAGACTTTGTAGAGAGAGGAGTGAAACAGCAGGTTGATCA-GAG 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 121 CAGAAACAAAAGGAAAAAGACTTTGTAGAGAGAGGAGTGAAGCAGCAGGTTGATCATG-G 179
Query 241 ACAACGAAGGAGAGAAGAAGAAGAA-AATGTAGTGAAGGCCATGGAAACAAAAGTGAAGC 299
|||||||||||||||||| |||||| || ||||| ||| |||||||||||||||||||||
Sbjct 180 ACAACGAAGGAGAGAAGATGAAGAAGAAGGTAGTAAAGTCCATGGAAACAAAAGTGAAGC 239
Query 300 TCGAGGAA 307
||| ||||
Sbjct 240 TCGGGGAA 247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5