BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G06440.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg919360 jgi|Araly1|919360|scaffold_100641.1 1916 0.0
> Ahg919360 jgi|Araly1|919360|scaffold_100641.1
Length=1217
Score = 1916 bits (1037), Expect = 0.0
Identities = 1149/1203 (96%), Gaps = 7/1203 (1%)
Strand=Plus/Plus
Query 124 CTCCATATACTCTTTGAGATACTATGAGGTTCCTCCTCATGAGATCACTTCTGGTTCACC 183
||||||| ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 CTCCATAGACTCTTTGAGATAGTATGAGGTTCCTCCTCATGAGATCAATTCTGATTCACC 60
Query 184 CATGTGGTGGCTCCATCATCAATGTCCGATCAACGACTACGTCTGCTCAATATGTAGCTT 243
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 CTTGTGGTGGCTCCATCATCAATGTCCGATCAACGACTACCTCTGCTCAATATGTAGCTT 120
Query 244 CCAGATCAAGAGACCCTGTTTTCGAGAAGCTCATGGACAAATACAAGAACCTTCTCAAGG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAGATCAAGAGACCCTGTTTTCGAGAAGCTCATGGACAAATACAAGAACCTTCTCAAGG 180
Query 304 TCATTGCCATACAAGACCTTACCCTCGCCAATCCAACAGCTGATCCTCCCTCTCTATCCA 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCATTGCCATACAAGACCTTATCCTCGCCAATCCAACAGCTGATCCTCCCTCTCTATCCA 240
Query 364 TTGAGTTTCTCTCCAGGCTCTCCCAGAAGCTCCACCTTAATCGTGGCGCTGCTTCTTTCC 423
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 241 TTGACTTTCTCTCCAGGCTCTCCCAGAAGCTCCACCTTAACCGTGGCGCCGCTTCTTTTT 300
Query 424 TGCGAAAGTATCCTCACATCTTTCATGTCTTGTATGATCCTGTGAAAGCTGAGCCCTTTT 483
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAAGAAAATATCCTCACATCTTTCATGTCTTGTATGATCCTGTGAAAGCTGAGCCCTTTT 360
Query 484 GCAGGTTAACTGATGTAGCCATGGAGATTTCTCGCCAAGAGGCTTTGGCTATCACTGCTA 543
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCAGGTTAACTGATGTAGCCTTGGAGATTTCTCGCCAAGAGGCTTTGGCTATCACTGCTA 420
Query 544 CTTTGTCTCTTGTTGTTGACCGGTTGGTTAGGCTCTTGTCTATGTCCATATCAAAGTCCA 603
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCTGTCTCTTGTTGTTGACCGGTTGGTTAGGCTCTTGTCTATGTCCATATCAAAGTCCA 480
Query 604 TTCCGCTTCGTGCGGTTTTTAAGGTTTGGAGAGAACTTGGGCTCCCAGATGATTTTGAGG 663
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTCCGCTTCGTGCGGTTTTCAAGGTTTGGAGAGAACTTGGGCTCCCAGATGATTTTGAGG 540
Query 664 ACTCTGTGATCTCAAAGAACCCTCATCTTTTTAAGCTTAGTGATGGTCATGAATCCAACA 723
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 541 ACTCTGTGATATCAAAGAACCCTCATCTTTTTAAGCTTAGTGATGGTCATGAACCCAATA 600
Query 724 CCCATATCTTAGAGCTGGTTCAGGAAGAAGAGAAAAGACTGGAATTTGAGGCCGCGGTTG 783
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 CCCATATCTTAGAGCTCGTTCAAGAAGAAGAGAAAAGACTGGAATTTGAGGCCGCGGTTG 660
Query 784 AGAAATGGAGGGTGGTTGAGTGTTCTAAGGAGGATTGCAGTGTCGATAGAACCGAGATTC 843
|||||||||||||||||||||||||||||||||| ||| ||||||||||||| || | ||
Sbjct 661 AGAAATGGAGGGTGGTTGAGTGTTCTAAGGAGGACTGCTGTGTCGATAGAACTGA-ACTC 719
Query 844 -AGTTTAGTTTCAAACATAGTTACCCACCAGGAATGAGACTGAGCAAGACATTTAAGGCT 902
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 720 CAGTTTAGCTTCAAACATAGTTACCCACCAGGAATGAGACTGAGCAAGACCTTTAAGGCT 779
Query 903 AAAGTTAAGGAATGGCAGAGGCTGCCTTACGTAGGGCCATACGAGGACATGGTTGGTAAG 962
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 780 AAAGTTAAGGAATGGCAGAGGCTGCCTTATGTAGGGCCATACGAGGACATGGTTGGGAAG 839
Query 963 AAGAAGAGTA--GATCCGGTGTGATGGGAATAGAGAAAAGAGCGGTTGCGATTGCTCACG 1020
|| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AA-AA-AGTACAGATCCGGAGTGATGGGAATAGAGAAAAGAGCGGTTGCGATTGCTCACG 897
Query 1021 AGTTCCTGAATCTGACTGTAGAGAAGATGGTGGAGGTAGAAAAGATCAGCCATTTCAGAA 1080
|||| || | |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 898 AGTTTCTCAGTCTGACTGTAGAGAAGATGGTGGAGGTAGAGAAGATCAGCCATTTCAGAA 957
Query 1081 AATGTTTTGGGATTGATTTGAACATAAGAGATTTGTTCTTGGATCACCCGGGCATGTTTT 1140
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 958 AATGTTTTGGGATTGATTTGAACATAAGAGATTTGTTCTTAGATCACCCGGGCATGTTTT 1017
Query 1141 ATGTGTCAACTAAAGGGAAAAGACACACTGTCTTTCTCAGAGAGGCTTATGAAAGAGGAC 1200
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1018 ATATGTCAACTAAAGGGAAAAGACACACTGTGTTTCTCAGAGAGGCTTATGAAAGAGGGC 1077
Query 1201 GTTTGATTGATCCAAATCCTGTTTACGATGCGAGGAGGAAGCTTCTTGACCTTGTTCTCT 1260
||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 1078 GTTTGATAGATCCGAATCCAGTTTACGACGCGAGGAGGAAGCTTCTTGACCTTGTTCTTT 1137
Query 1261 TGGGACGCCATGCTGCTTTATCAGAATCTGGGAACACTAGTATGTCTGAACAAGAATGAC 1320
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1138 TGGGACGCCATGCTGCTTTATCAGAATCTGGGAGCACTAGTATGTGTGAACAAGAATGA- 1196
Query 1321 ATT 1323
|||
Sbjct 1197 ATT 1199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5